Rroxscaffold_1G00020540

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000974
Physical Location & Seq
Reverse (-)
24910486 .. 24911051
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020540.1

Sequence Viewer

Length: 468 bp
ATGATGAGTATCAAGTATGTAATCGTGCTTGTCATAGCAATTGCAGCAATTGCAGAAGGCGCCGAGTACACTGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTCTTTTGTGGAGAACGATACTCTAGTGTTTAACTTCGAAGAAGGAATGCATGACATCACTGTACTAACCAAGGAAGACTTCGACGCCTGTAACATGAAGAATCCCTTGTTTCAGTCCCCAAAACCAGGTAGAGTTACCGTTGAGGCGAGCGACACATTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCGAATGGGCAAAAGTTCGCCATTTATTTTGCCTCTGCACCTTTGCCTCCTAGTCCGAGTCCAAGTGCATCTGCTACTACTGATCAATCTCTGGACACCCAGCGGTTCAAGTTTGTGTCAAGAAAGATGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

155

Amino Acids

17.19

Weight (kDa)

4.74

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 32 - 114 1.3e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 332
AciI CCGC 1 cut(s) 433
AcvI CACGTG 1 cut(s) 309
AcyI GRCGYC 2 cut(s) 60, 225
AfaI GTAC 2 cut(s) 68, 204
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 1 cut(s) 439
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 44, 312
AspLEI GCGC 2 cut(s) 62, 332
AsuII TTCGAA 1 cut(s) 177
BaeI ACNNNNGTAYC 2 cut(s) 150, 183
BanI GGYRCC 1 cut(s) 59
BbrPI CACGTG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 56, 324
BccI CCATC 2 cut(s) 88, 451
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 267
BclI TGATCA 1 cut(s) 412
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 3 cut(s) 164, 381, 466
BfmI CTRYAG 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 2 cut(s) 45, 313
BlsI GCNGC 2 cut(s) 46, 314
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 2 cut(s) 61, 99
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 177
BsaAI YACGTR 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 60, 225
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 266
BseXI GCAGC 2 cut(s) 56, 324
BseYI CCCAGC 1 cut(s) 429
BsgI GTGCAG 2 cut(s) 331, 351
Bsh1236I CGCG 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 192
Bsp119I TTCGAA 1 cut(s) 177
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 1 cut(s) 433
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 61, 99
BspT104I TTCGAA 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 412
BssNI GRCGYC 2 cut(s) 60, 225
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 73, 202, 280
BstACI GRCGYC 2 cut(s) 60, 225
BstAPI GCANNNNNTGC 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 309
BstBI TTCGAA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 289
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 62, 332
BstKTI GATC 1 cut(s) 415
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 3 cut(s) 44, 50, 59
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 72
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 2 cut(s) 56, 324
BstV2I GAAGAC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 3 cut(s) 69, 198, 325
Cac8I GCNNGC 1 cut(s) 289
CfoI GCGC 2 cut(s) 62, 332
CseI GACGC 1 cut(s) 233
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 2 cut(s) 67, 203
CviAII CATG 4 cut(s) 85, 126, 191, 235
CviJI RGCY 1 cut(s) 315
CviKI_1 RGCY 1 cut(s) 315
CviQI GTAC 2 cut(s) 67, 203
DinI GGCGCC 1 cut(s) 61
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eco130I CCWWGG 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 4 cut(s) 88, 129, 194, 238
FaiI YATR 7 cut(s) 18, 35, 86, 120, 127, 192, 236
FalI AAGNNNNNCTT 4 cut(s) 203, 235, 230, 262
FaqI GGGAC 1 cut(s) 241
FatI CATG 4 cut(s) 84, 125, 190, 234
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 45, 313
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 45, 313
FspBI CTAG 3 cut(s) 164, 381, 466
GlaI GCGC 2 cut(s) 61, 331
GluI GCNGC 2 cut(s) 45, 313
GsaI CCCAGC 1 cut(s) 433
HaeII RGCGCY 1 cut(s) 63
HgaI GACGC 1 cut(s) 233
HhaI GCGC 2 cut(s) 62, 332
Hin1I GRCGYC 2 cut(s) 60, 225
Hin1II CATG 4 cut(s) 88, 129, 194, 238
Hin6I GCGC 2 cut(s) 60, 330
HinP1I GCGC 2 cut(s) 60, 330
HinfI GANTC 2 cut(s) 241, 388
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 3 cut(s) 110, 422, 450
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 50, 176
HpyCH4III ACNGT 3 cut(s) 73, 202, 280
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 6 cut(s) 44, 53, 190, 312, 368, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 50, 59
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 2 cut(s) 60, 225
Hsp92II CATG 4 cut(s) 88, 129, 194, 238
HspAI GCGC 2 cut(s) 60, 330
KasI GGCGCC 1 cut(s) 59
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 1 cut(s) 412
LpnPI CCDG 5 cut(s) 241, 252, 279, 407, 443
Lsp1109I GCAGC 2 cut(s) 56, 324
LweI GCATC 1 cut(s) 407
MabI ACCWGGT 1 cut(s) 265
MaeI CTAG 3 cut(s) 164, 381, 466
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 3 cut(s) 230, 274, 461
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 3 cut(s) 191, 227, 250
MfeI CAATTG 2 cut(s) 39, 48
MluCI AATT 2 cut(s) 39, 48
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 4 cut(s) 111, 277, 373, 387
Mph1103I ATGCAT 1 cut(s) 192
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 2 cut(s) 39, 48
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 3 cut(s) 44, 50, 59
NarI GGCGCC 1 cut(s) 60
NdeII GATC 1 cut(s) 412
NlaIII CATG 4 cut(s) 88, 129, 194, 238
NlaIV GGNNCC 2 cut(s) 61, 99
NmeAIII GCCGAG 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 192
NspV TTCGAA 1 cut(s) 177
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 46, 314
PleI GAGTC 1 cut(s) 396
PluTI GGCGCC 1 cut(s) 63
PmaCI CACGTG 1 cut(s) 309
PmlI CACGTG 1 cut(s) 309
PpsI GAGTC 1 cut(s) 396
Ppu21I YACGTR 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 265
PspCI CACGTG 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 61, 99
RsaI GTAC 2 cut(s) 68, 204
RsaNI GTAC 2 cut(s) 67, 203
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 45, 313
Sau3AI GATC 1 cut(s) 412
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 267
SetI ASST 4 cut(s) 271, 311, 317, 373
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 1 cut(s) 72
SfoI GGCGCC 1 cut(s) 61
SfuI TTCGAA 1 cut(s) 177
Sse9I AATT 2 cut(s) 39, 48
SsiI CCGC 1 cut(s) 433
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 3 cut(s) 164, 381, 466
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 73, 202, 280
TaiI ACGT 1 cut(s) 311
TaqI TCGA 2 cut(s) 177, 222
TasI AATT 2 cut(s) 39, 48
TatI WGTACW 2 cut(s) 66, 202
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 76, 205, 332
TseI GCWGC 2 cut(s) 44, 312
TspDTI ATGAA 2 cut(s) 114, 251
TspRI CASTG 3 cut(s) 76, 205, 332
XspI CTAG 3 cut(s) 164, 381, 466
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.