Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000974

Physical Location & Seq

Genomic Coordinates Reverse (-)

2753429 .. 2753968

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG035600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCAGTAGTATTGTTACATGGAGCAGAAGCTGTACTATACACAGTTGGAGACGACTTGGGTTGGGCTATTCCTCCTGGTGGCGCTGCTACTTATGCTGCATGGGCTGCCGAGCATAGCTTTGTAGTCAACGATGAGCTAGAGTTCGACTTTGCAGTAGGTGAACAAGACTTGGCCTTAGTAACCAAGGATGATTTCGACAGTTGTAACACGGCGGATCCCTTGTTGCTATTCCAGGAGGCAGTTACACTTCAGTTTATCGCAAGCGACACATTTTATTTCACCTCCACCTTGGCCGGGCACTGCACCAAAGGCCAAAAGATTGCCATTTACATCGGCGCTGCCCTGCCTCCTAGTCCCAGTCCAACTCCATGTCCTTCTTCATCAAGTGCTGATGACGCCCTAACGGTAACGGCCAAATTTGTGTCTCACAAGATCATGGCCAAAGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cu_bind_like

Protein Analysis

151

Amino Acids

15.87

Weight (kDa)

4.29

Isoelectric Point (pI)

34.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	30 - 106	7.8e-12	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02910 FvH4_1g02970 FvH4_6g40671
malus_domestica	MD02G1028900.v1.1 MD02G1029100.v1.1 MD15G1170500.v1.1
prunus_persica	Prupe.7G245800_v2.0.a1 Prupe.7G245900_v2.0.a1 Prupe.7G246100_v2.0.a1
pyrus_communis	pycom02g02370 pycom02g02380 pycom02g02390 pycom02g02400 pycom15g15200
rosa_chinensis	RchiOBHm_Chr2g0088061 RchiOBHm_Chr2g0088081 RchiOBHm_Chr2g0156091 RchiOBHm_Chr2g0156121 RchiOBHm_Chr2g0156131 RchiOBHm_Chr5g0060121 RchiOBHm_Chr5g0060181
rosa_multiflora	Rmu_co8398493.1_g000001 Rmu_sc0000260.1_g000020 Rmu_sc0000493.1_g000045 Rmu_sc0003275.1_g000013 Rmu_sc0003275.1_g000020 Rmu_sc0003275.1_g000042 Rmu_sc0011922.1_g000011
rosa_roxburghii	Rroxscaffold_1G00020520 Rroxscaffold_1G00020540 Rroxscaffold_2G00152970 Rroxscaffold_2G00152990 Rroxscaffold_2G00153000 Rroxscaffold_2G00153020
rosa_rugosa	Rorug01G0480500 Rorug01G0480600 Rorug01G0480800 Rorug02G0451600 Rorug02G0451600 Rorug05G0328200
rosa_samantha	Rh2AG035400 Rh2AG035700 Rh2BG034400 Rh2BG034600 Rh2BG034900 Rh2BG529600 Rh2CG035600 Rh2CG036000 Rh2CG503200 Rh2DG035100 Rh2DG035500 Rh5AG392000 Rh5AG392100 Rh5BG404500 Rh5BG404600 Rh5CG428200 Rh5CG428600 Rh5DG420300
rosa_wichuraiana	Rw2G002780 Rw2G002790 Rw2G002810 Rw5G036960 Rw5G036970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	2 cut(s)	212, 225
AcoI	YGGCCR	3 cut(s)	294, 414, 441
AcsI	RAATTY	1 cut(s)	419
AcuI	CTGAAG	1 cut(s)	236
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	80, 297
AjnI	CCWGG	2 cut(s)	76, 234
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	3 cut(s)	32, 120, 139
AluI	AGCT	3 cut(s)	32, 120, 139
Alw26I	GTCTC	2 cut(s)	45, 432
AlwI	GGATC	2 cut(s)	212, 225
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	5 cut(s)	174, 294, 313, 414, 441
ApeKI	GCWGC	4 cut(s)	86, 98, 107, 341
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	86, 341
AsuC2I	CCSGG	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	173, 274
BaeGI	GKGCMC	1 cut(s)	303
BalI	TGGCCA	1 cut(s)	443
BamHI	GGATCC	1 cut(s)	217
BbvI	GCAGC	4 cut(s)	73, 85, 94, 328
BceAI	ACGGC	2 cut(s)	228, 429
BciT130I	CCWGG	2 cut(s)	78, 236
BcnI	CCSGG	1 cut(s)	298
BcoDI	GTCTC	2 cut(s)	45, 432
BfaI	CTAG	3 cut(s)	140, 354, 454
BfoI	RGCGCY	2 cut(s)	87, 342
BisI	GCNGC	4 cut(s)	87, 99, 108, 342
BlsI	GCNGC	4 cut(s)	88, 100, 109, 343
Bme1390I	CCNGG	3 cut(s)	78, 236, 298
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	3 cut(s)	78, 236, 298
BmrI	ACTGGG	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	298
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	186, 291
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 297
Bse1I	ACTGG	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	78, 236
BseDI	CCNNGG	2 cut(s)	186, 291
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	80, 297
BseNI	ACTGG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	4 cut(s)	73, 85, 94, 328
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	5 cut(s)	176, 296, 315, 416, 443
BsiSI	CCGG	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	80, 297
BsmAI	GTCTC	2 cut(s)	45, 432
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	5 cut(s)	176, 296, 315, 416, 443
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	217, 435
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	5 cut(s)	176, 296, 315, 416, 443
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	2 cut(s)	212, 225
BsrI	ACTGG	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	186, 291
BssMI	GATC	2 cut(s)	217, 435
BssNI	GRCGYC	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	186, 291
Bst2UI	CCWGG	2 cut(s)	78, 236
Bst4CI	ACNGT	3 cut(s)	46, 203, 409
BstACI	GRCGYC	1 cut(s)	399
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	196
BstH2I	RGCGCY	2 cut(s)	87, 342
BstHHI	GCGC	2 cut(s)	86, 341
BstKTI	GATC	2 cut(s)	220, 438
BstMAI	GTCTC	2 cut(s)	45, 432
BstMBI	GATC	2 cut(s)	217, 435
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 104, 107, 312, 398
BstNI	CCWGG	2 cut(s)	78, 236
BstSCI	CCNGG	3 cut(s)	76, 234, 296
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	4 cut(s)	73, 85, 94, 328
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	5 cut(s)	176, 296, 315, 416, 443
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	2 cut(s)	86, 341
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	4 cut(s)	20, 102, 372, 439
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	178
DpnI	GATC	2 cut(s)	219, 437
DpnII	GATC	2 cut(s)	217, 435
EaeI	YGGCCR	3 cut(s)	294, 414, 441
EciI	GGCGGA	1 cut(s)	230
Eco130I	CCWWGG	2 cut(s)	186, 291
Eco57I	CTGAAG	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	76, 234
EcoT14I	CCWWGG	2 cut(s)	186, 291
ErhI	CCWWGG	2 cut(s)	186, 291
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	4 cut(s)	23, 105, 375, 442
FaiI	YATR	7 cut(s)	21, 40, 96, 103, 117, 373, 440
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	4 cut(s)	19, 101, 371, 438
Fnu4HI	GCNGC	4 cut(s)	87, 99, 108, 342
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	87, 99, 108, 342
FspBI	CTAG	3 cut(s)	140, 354, 454
GlaI	GCGC	2 cut(s)	85, 340
GluI	GCNGC	4 cut(s)	87, 99, 108, 342
HaeII	RGCGCY	2 cut(s)	87, 342
HaeIII	GGCC	5 cut(s)	176, 296, 315, 416, 443
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	2 cut(s)	86, 341
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	4 cut(s)	23, 105, 375, 442
Hin6I	GCGC	2 cut(s)	84, 339
HinP1I	GCGC	2 cut(s)	84, 339
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	2 cut(s)	173, 274
Hpy166II	GTNNAC	2 cut(s)	130, 164
Hpy8I	GTNNAC	2 cut(s)	130, 164
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	3 cut(s)	46, 203, 409
HpyCH4V	TGCA	3 cut(s)	101, 155, 306
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 104, 107, 312, 398
HpyF3I	CTNAG	1 cut(s)	178
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	4 cut(s)	23, 105, 375, 442
HspAI	GCGC	2 cut(s)	84, 339
Kzo9I	GATC	2 cut(s)	217, 435
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	7 cut(s)	63, 90, 221, 248, 310, 359, 373
Lsp1109I	GCAGC	4 cut(s)	73, 85, 94, 328
MaeI	CTAG	3 cut(s)	140, 354, 454
MaeIII	GTNAC	5 cut(s)	15, 181, 206, 244, 409
MalI	GATC	2 cut(s)	219, 437
MboI	GATC	2 cut(s)	217, 435
MboII	GAAGA	1 cut(s)	372
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	1 cut(s)	419
MluNI	TGGCCA	1 cut(s)	443
MmeI	TCCRAC	2 cut(s)	28, 389
MnlI	CCTC	4 cut(s)	84, 232, 295, 360
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	78, 236, 298
MvaI	CCWGG	2 cut(s)	78, 236
MwoI	GCNNNNNNNGC	5 cut(s)	95, 104, 107, 312, 398
NciI	CCSGG	1 cut(s)	298
NdeII	GATC	2 cut(s)	217, 435
NlaIII	CATG	4 cut(s)	23, 105, 375, 442
NlaIV	GGNNCC	1 cut(s)	219
NmeAIII	GCCGAG	1 cut(s)	136
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	4 cut(s)	88, 100, 109, 343
Psp6I	CCWGG	2 cut(s)	76, 234
PspGI	CCWGG	2 cut(s)	76, 234
PspN4I	GGNNCC	1 cut(s)	219
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	217
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SatI	GCNGC	4 cut(s)	87, 99, 108, 342
Sau3AI	GATC	2 cut(s)	217, 435
ScrFI	CCNGG	3 cut(s)	78, 236, 298
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	6 cut(s)	34, 122, 141, 163, 287, 293
Sse9I	AATT	1 cut(s)	419
SsiI	CCGC	1 cut(s)	215
SspMI	CTAG	3 cut(s)	140, 354, 454
StyD4I	CCNGG	3 cut(s)	76, 234, 296
StyI	CCWWGG	2 cut(s)	186, 291
TaaI	ACNGT	3 cut(s)	46, 203, 409
TaqI	TCGA	2 cut(s)	147, 198
TasI	AATT	1 cut(s)	419
TatI	WGTACW	1 cut(s)	34
TscAI	CASTG	1 cut(s)	308
TseI	GCWGC	4 cut(s)	86, 98, 107, 341
TspDTI	ATGAA	1 cut(s)	372
TspRI	CASTG	1 cut(s)	308
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	3 cut(s)	140, 354, 454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.