Rh5AG392000

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000974
Physical Location & Seq
Forward (+)
67987885 .. 67989072
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG392000.1

Sequence Viewer

Length: 468 bp
ATGATGAGTATGAAGTATGTGATCGTGCTTGTCATAGCAATTGTAGCAATCGCAGAAGGCGCCGAGTACACTGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCCGACTATTATGCTTCATGGGTTTCCAAGTATTCTTTTGTGGAGAACGACACTCTAGTGTTTAACTTTGAAGAAGGAATGCATGACATCACTGTACTAACCAAGGAAGACTTCGACGCCTGCAACATGAAGAATCCCTTGTTTCAGTTCCCAAATCCAGGGGGAGTTACAGTTGAGGTGAGTGGCACAATTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCGAATGGGCAAAAGTTCGCAATTTATTTTGCCTCTGCACCTTTGCCTCCTAGTCCGAGTCCAAGTGCATCTGCTGCTACAGATCAATCTCTGGACAACCAGCGGTTCAAGTTTGTGTCAAGAAAGATGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

155

Amino Acids

17.1

Weight (kDa)

4.58

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 32 - 114 1.6e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccII CGCG 1 cut(s) 332
AciI CCGC 1 cut(s) 433
AcvI CACGTG 1 cut(s) 309
AcyI GRCGYC 2 cut(s) 60, 225
AfaI GTAC 2 cut(s) 68, 204
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 2 cut(s) 179, 439
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AleI CACNNNNGTG 1 cut(s) 164
AluBI AGCT 1 cut(s) 315
AluI AGCT 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 312, 404
AspLEI GCGC 2 cut(s) 62, 332
AsuHPI GGTGA 1 cut(s) 298
BanI GGYRCC 1 cut(s) 59
BbrPI CACGTG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 324, 391
BccI CCATC 2 cut(s) 88, 451
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 3 cut(s) 164, 381, 466
BfmI CTRYAG 2 cut(s) 72, 408
BfoI RGCGCY 1 cut(s) 63
BisI GCNGC 2 cut(s) 313, 405
BlsI GCNGC 2 cut(s) 314, 406
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 2 cut(s) 61, 99
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 309
BsaHI GRCGYC 2 cut(s) 60, 225
BsaJI CCNNGG 2 cut(s) 210, 266
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 210, 266
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 266
BseXI GCAGC 2 cut(s) 324, 391
BsgI GTGCAG 2 cut(s) 331, 351
Bsh1236I CGCG 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 1 cut(s) 72
BsmBI CGTCTC 1 cut(s) 72
BsmI GAATGC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 21, 412
BspACI CCGC 1 cut(s) 433
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 61, 99
BspT107I GGYRCC 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 210, 266
BssMI GATC 2 cut(s) 21, 412
BssNI GRCGYC 2 cut(s) 60, 225
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 3 cut(s) 73, 202, 280
BstACI GRCGYC 2 cut(s) 60, 225
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 229
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 62, 332
BstKTI GATC 2 cut(s) 24, 415
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 21, 412
BstMWI GCNNNNNNNGC 3 cut(s) 44, 59, 404
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 2 cut(s) 72, 408
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 2 cut(s) 324, 391
BstV2I GAAGAC 1 cut(s) 222
BtsCI GGATG 1 cut(s) 99
BtsI GCAGTG 1 cut(s) 325
BtsIMutI CAGTG 3 cut(s) 69, 198, 325
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 2 cut(s) 62, 332
CseI GACGC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 67, 203
CviAII CATG 4 cut(s) 85, 126, 191, 235
CviJI RGCY 1 cut(s) 315
CviKI_1 RGCY 1 cut(s) 315
CviQI GTAC 2 cut(s) 67, 203
DinI GGCGCC 1 cut(s) 61
DpnI GATC 2 cut(s) 23, 414
DpnII GATC 2 cut(s) 21, 412
Eco130I CCWWGG 1 cut(s) 210
Eco72I CACGTG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 265
EcoT14I CCWWGG 1 cut(s) 210
EcoT22I ATGCAT 1 cut(s) 192
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 72
FaeI CATG 4 cut(s) 88, 129, 194, 238
FaiI YATR 8 cut(s) 11, 18, 35, 86, 120, 127, 192, 236
FalI AAGNNNNNCTT 4 cut(s) 203, 235, 230, 262
FatI CATG 4 cut(s) 84, 125, 190, 234
Fnu4HI GCNGC 2 cut(s) 313, 405
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 313, 405
FspBI CTAG 3 cut(s) 164, 381, 466
GlaI GCGC 2 cut(s) 61, 331
GluI GCNGC 2 cut(s) 313, 405
HaeII RGCGCY 1 cut(s) 63
HgaI GACGC 1 cut(s) 233
HhaI GCGC 2 cut(s) 62, 332
Hin1I GRCGYC 2 cut(s) 60, 225
Hin1II CATG 4 cut(s) 88, 129, 194, 238
Hin6I GCGC 2 cut(s) 60, 330
HinP1I GCGC 2 cut(s) 60, 330
HinfI GANTC 2 cut(s) 241, 388
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 387
Hpy188III TCNNGA 3 cut(s) 110, 422, 450
Hpy8I GTNNAC 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 2 cut(s) 50, 176
HpyCH4III ACNGT 3 cut(s) 73, 202, 280
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 5 cut(s) 190, 231, 312, 368, 398
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 59, 404
HpySE526I ACGT 1 cut(s) 308
Hsp92I GRCGYC 2 cut(s) 60, 225
Hsp92II CATG 4 cut(s) 88, 129, 194, 238
HspAI GCGC 2 cut(s) 60, 330
KasI GGCGCC 1 cut(s) 59
Kzo9I GATC 2 cut(s) 21, 412
LpnPI CCDG 5 cut(s) 241, 252, 279, 407, 443
Lsp1109I GCAGC 2 cut(s) 324, 391
LweI GCATC 1 cut(s) 407
MaeI CTAG 3 cut(s) 164, 381, 466
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 274, 461
MalI GATC 2 cut(s) 23, 414
MboI GATC 2 cut(s) 21, 412
MboII GAAGA 3 cut(s) 191, 227, 250
MfeI CAATTG 1 cut(s) 39
MluCI AATT 3 cut(s) 39, 297, 351
Mly113I GGCGCC 1 cut(s) 60
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 4 cut(s) 111, 277, 373, 387
Mph1103I ATGCAT 1 cut(s) 192
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 433
MspR9I CCNGG 1 cut(s) 267
MunI CAATTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 192
MvaI CCWGG 1 cut(s) 267
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 3 cut(s) 44, 59, 404
NarI GGCGCC 1 cut(s) 60
NdeII GATC 2 cut(s) 21, 412
NlaIII CATG 4 cut(s) 88, 129, 194, 238
NlaIV GGNNCC 2 cut(s) 61, 99
NmeAIII GCCGAG 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 164
PctI GAATGC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 2 cut(s) 314, 406
PleI GAGTC 1 cut(s) 396
PluTI GGCGCC 1 cut(s) 63
PmaCI CACGTG 1 cut(s) 309
PmlI CACGTG 1 cut(s) 309
PpsI GAGTC 1 cut(s) 396
Ppu21I YACGTR 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 265
PspCI CACGTG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 61, 99
RsaI GTAC 2 cut(s) 68, 204
RsaNI GTAC 2 cut(s) 67, 203
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 313, 405
Sau3AI GATC 2 cut(s) 21, 412
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 267
SetI ASST 4 cut(s) 288, 311, 317, 373
SfaNI GCATC 1 cut(s) 407
SfcI CTRYAG 2 cut(s) 72, 408
SfoI GGCGCC 1 cut(s) 61
SmiMI CAYNNNNRTG 1 cut(s) 164
Sse9I AATT 3 cut(s) 39, 297, 351
SsiI CCGC 1 cut(s) 433
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 3 cut(s) 164, 381, 466
StyD4I CCNGG 1 cut(s) 265
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 73, 202, 280
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 222
TasI AATT 3 cut(s) 39, 297, 351
TatI WGTACW 2 cut(s) 66, 202
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 76, 205, 332
TseI GCWGC 2 cut(s) 312, 404
TspDTI ATGAA 3 cut(s) 26, 114, 251
TspRI CASTG 3 cut(s) 76, 205, 332
XspI CTAG 3 cut(s) 164, 381, 466
Zsp2I ATGCAT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.