Rroxscaffold_2G00152990

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000974
Physical Location & Seq
Forward (+)
89807903 .. 89808490
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152990.1

Sequence Viewer

Length: 525 bp
ATGAATATGAAGTATGTGTTCGTGCTTGTCATAGCAATCGCAGCCATCGCAGAAGGCGCAGAATACACCGTAGGAGACGACATGGGTTGGATGGTTCCTCCCACTCCGGACTATTATGCTTCATGGGTTTCCAAGTATTACTTTGTGGAGAATGATACTCTAGGTGAATTTCTTGATGATGATATCTATCGTGCTGCTTGTTTGTTTCTGCTTGCAGTGTTTAACTTTGAACAAGGAGTACATGACATCACTGTACTAACCAAGGAAGACTTCGATGCCTGCAACATGAAGAATCCCTTATTTCAATCCCCAGAACCAGGTGAAGTTATGGTTATGGCGAGCGACACATTTTACTTCACGTGCAGCTTTGGTCAGCACTGCGCTAATGGGCAAAAGTTTGCCATTTATTTTGCCTCTGCACCTTTGCCTCCCAGTCCAAGTCCGTGTCCAAGTGAATCTGCTACTGCTGATCAATCTACGGAGTCCCGGCCGTTCAAGTTTGTATCGGCAAAGATGGGTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

174

Amino Acids

19.31

Weight (kDa)

4.24

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 73 - 131 5.4e-08 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 1 cut(s) 167
AcvI CACGTG 1 cut(s) 360
AfaI GTAC 2 cut(s) 240, 255
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 3 cut(s) 230, 305, 496
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AluBI AGCT 1 cut(s) 366
AluI AGCT 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 69
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 3 cut(s) 41, 194, 363
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 2 cut(s) 59, 383
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 2 cut(s) 176, 332
BbrPI CACGTG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 53, 181, 375
BccI CCATC 3 cut(s) 53, 85, 508
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 1 cut(s) 469
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 2 cut(s) 161, 523
BisI GCNGC 3 cut(s) 42, 195, 364
BlsI GCNGC 3 cut(s) 43, 196, 365
Bme1390I CCNGG 2 cut(s) 318, 487
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 318, 487
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 273
BpuMI CCSGG 1 cut(s) 487
BsaAI YACGTR 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 432
Bse8I GATNNNNATC 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 106
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 432
BseX3I CGGCCG 1 cut(s) 488
BseXI GCAGC 3 cut(s) 53, 181, 375
BsgI GTGCAG 2 cut(s) 382, 402
Bsh1285I CGRYCG 1 cut(s) 491
BshFI GGCC 1 cut(s) 490
BsiEI CGRYCG 1 cut(s) 491
BsiSI CCGG 2 cut(s) 107, 487
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 1 cut(s) 490
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 469
BspANI GGCC 1 cut(s) 490
BspEI TCCGGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 70, 253
BstBAI YACGTR 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 213, 280, 340
BstF5I GGATG 1 cut(s) 96
BstHHI GCGC 2 cut(s) 59, 383
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 469
BstMCI CGRYCG 1 cut(s) 491
BstMWI GCNNNNNNNGC 3 cut(s) 41, 47, 56
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 316, 485
BstV1I GCAGC 3 cut(s) 53, 181, 375
BstV2I GAAGAC 1 cut(s) 273
BstZI CGGCCG 1 cut(s) 488
BsuRI GGCC 1 cut(s) 490
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 96
BtsI GCAGTG 2 cut(s) 222, 376
BtsIMutI CAGTG 3 cut(s) 222, 249, 376
Cac8I GCNNGC 3 cut(s) 213, 280, 340
CfoI GCGC 2 cut(s) 59, 383
CsiI ACCWGGT 1 cut(s) 316
Csp6I GTAC 2 cut(s) 239, 254
CviAII CATG 4 cut(s) 82, 123, 242, 286
CviJI RGCY 3 cut(s) 44, 366, 490
CviKI_1 RGCY 3 cut(s) 44, 366, 490
CviQI GTAC 2 cut(s) 239, 254
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 488
EagI CGGCCG 1 cut(s) 488
EclXI CGGCCG 1 cut(s) 488
Eco130I CCWWGG 1 cut(s) 261
Eco32I GATATC 1 cut(s) 184
Eco52I CGGCCG 1 cut(s) 488
Eco72I CACGTG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 316
EcoRV GATATC 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 85, 126, 245, 289
FalI AAGNNNNNCTT 6 cut(s) 125, 157, 254, 286, 281, 313
FaqI GGGAC 1 cut(s) 469
FatI CATG 4 cut(s) 81, 122, 241, 285
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 3 cut(s) 42, 195, 364
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 42, 195, 364
FspBI CTAG 2 cut(s) 161, 523
GlaI GCGC 2 cut(s) 58, 382
GluI GCNGC 3 cut(s) 42, 195, 364
HaeIII GGCC 1 cut(s) 490
HapII CCGG 2 cut(s) 107, 487
HhaI GCGC 2 cut(s) 59, 383
Hin1II CATG 4 cut(s) 85, 126, 245, 289
Hin6I GCGC 2 cut(s) 57, 381
HinP1I GCGC 2 cut(s) 57, 381
HinfI GANTC 3 cut(s) 292, 455, 482
HpaII CCGG 2 cut(s) 107, 487
HphI GGTGA 2 cut(s) 176, 332
Hpy188III TCNNGA 2 cut(s) 107, 173
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 2 cut(s) 70, 253
HpyCH4IV ACGT 1 cut(s) 359
HpyCH4V TGCA 4 cut(s) 215, 282, 363, 419
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 47, 56
HpySE526I ACGT 1 cut(s) 359
Hsp92II CATG 4 cut(s) 85, 126, 245, 289
HspAI GCGC 2 cut(s) 57, 381
Kpn2I TCCGGA 1 cut(s) 106
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 1 cut(s) 469
LpnPI CCDG 7 cut(s) 120, 292, 303, 324, 330, 445, 500
Lsp1109I GCAGC 3 cut(s) 53, 181, 375
LweI GCATC 1 cut(s) 265
MabI ACCWGGT 1 cut(s) 316
MaeI CTAG 2 cut(s) 161, 523
MaeII ACGT 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 518
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 2 cut(s) 278, 301
MluCI AATT 1 cut(s) 167
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 3 cut(s) 108, 424, 438
MroI TCCGGA 1 cut(s) 106
MseI TTAA 1 cut(s) 222
MspI CCGG 2 cut(s) 107, 487
MspR9I CCNGG 2 cut(s) 318, 487
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 41, 47, 56
NciI CCSGG 1 cut(s) 487
NdeII GATC 1 cut(s) 469
NlaIII CATG 4 cut(s) 85, 126, 245, 289
NlaIV GGNNCC 1 cut(s) 96
PfeI GAWTC 2 cut(s) 292, 455
PkrI GCNGC 3 cut(s) 43, 196, 365
PleI GAGTC 1 cut(s) 490
PmaCI CACGTG 1 cut(s) 360
PmlI CACGTG 1 cut(s) 360
PpsI GAGTC 1 cut(s) 490
Ppu21I YACGTR 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 316
PspCI CACGTG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 96
PsrI GAACNNNNNNTAC 2 cut(s) 222, 254
RsaI GTAC 2 cut(s) 240, 255
RsaNI GTAC 2 cut(s) 239, 254
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 3 cut(s) 42, 195, 364
Sau3AI GATC 1 cut(s) 469
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 2 cut(s) 318, 487
SetI ASST 5 cut(s) 166, 322, 362, 368, 424
SexAI ACCWGGT 1 cut(s) 316
SfaNI GCATC 1 cut(s) 265
Sse9I AATT 1 cut(s) 167
SspMI CTAG 2 cut(s) 161, 523
StyD4I CCNGG 2 cut(s) 316, 485
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 70, 253
TaiI ACGT 1 cut(s) 362
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 167
TatI WGTACW 2 cut(s) 238, 253
TfiI GAWTC 2 cut(s) 292, 455
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 3 cut(s) 222, 256, 383
TseI GCWGC 3 cut(s) 41, 194, 363
TspDTI ATGAA 4 cut(s) 17, 23, 111, 302
TspGWI ACGGA 2 cut(s) 432, 494
TspRI CASTG 3 cut(s) 222, 256, 383
XapI RAATTY 1 cut(s) 167
XspI CTAG 2 cut(s) 161, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.