Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Reverse (-)

21320114 .. 21329184

Gene Structure 9071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCCAGCGAATCAATTCGGGAGCTTGTTCATCAGTTTTATCTTCCTGAAAAGCTATCGTGTCGTCCTTTGAAGGATAAGGATTCAATTGTTTGTCCGGCCAATGGTACCTTAATTTTTCTGTCTCAACTCCGTGCGGGCTTAGAACTTCCTCTGTCTCCTGAGGTTCACTATGCCATAGCAGAGCTAGGGATAGCCATTGGTCAAATATGCCCTATCACGTTGAAGATAATTCATTTGGTTTTCTTGATTTGGAAGGTAGTGGGTTTAGTTGTCCCTTCTCGTGTGGAAATTCTCTACTTCTTTGCTCTCAAATATTCTCAGAGGGACCATTGTCATGGGACTGTTTATTTGACCCCGCGGAGCGTTGGCCATTATAGGTTGTTCGACATTCCTGACTTTGGTTCATCATTGTGCTCGGGTGCCTTTGTCGCAGTGTCTGTTTGGGAAAAGGATGCGGGCTGTGTTTCCCAATATCACCTAGGTCTTGAGGTGTCACGTACTTTTTGTGCTGCAAGAGAATATGATGGATTTATGACTCGCATCGATACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

5_nucleotid

Protein Analysis

186

Amino Acids

20.75

Weight (kDa)

6.64

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	107
AccB1I	GGYRCC	2 cut(s)	107, 422
AccII	CGCG	1 cut(s)	361
AciI	CCGC	4 cut(s)	137, 359, 361, 458
AcoI	YGGCCR	2 cut(s)	99, 370
AcsI	RAATTY	1 cut(s)	291
AfaI	GTAC	2 cut(s)	109, 502
AfiI	CCNNNNNNNGG	2 cut(s)	104, 401
AgsI	TTSAA	3 cut(s)	73, 87, 226
AluBI	AGCT	3 cut(s)	25, 55, 187
AluI	AGCT	3 cut(s)	25, 55, 187
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	2 cut(s)	129, 162
AlwNI	CAGNNNCTG	1 cut(s)	440
Ama87I	CYCGRG	1 cut(s)	418
AoxI	GGCC	2 cut(s)	99, 370
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	1 cut(s)	291
ArsI	GACNNNNNNTTYG	2 cut(s)	334, 366
Asp700I	GAANNNNTTC	1 cut(s)	15
Asp718I	GGTACC	1 cut(s)	107
AspA2I	CCTAGG	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	328
AsuHPI	GGTGA	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	418
AvaII	GGWCC	1 cut(s)	328
AvrII	CCTAGG	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	162
BalI	TGGCCA	1 cut(s)	372
BanI	GGYRCC	2 cut(s)	107, 422
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	1 cut(s)	521
BcoDI	GTCTC	2 cut(s)	129, 162
BfaI	CTAG	2 cut(s)	188, 482
BisI	GCNGC	1 cut(s)	513
BlnI	CCTAGG	1 cut(s)	481
BlsI	GCNGC	1 cut(s)	514
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	418
BmgT120I	GGNCC	1 cut(s)	328
BmiI	GGNNCC	3 cut(s)	109, 329, 424
BmsI	GCATC	2 cut(s)	445, 552
BoxI	GACNNNNGTC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	509
Bsa29I	ATCGAT	1 cut(s)	546
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	359, 481
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 401
Bse21I	CCTNAGG	1 cut(s)	162
BseCI	ATCGAT	1 cut(s)	546
BseDI	CCNNGG	2 cut(s)	359, 481
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	2 cut(s)	104, 401
BseMII	CTCAG	2 cut(s)	153, 335
BseXI	GCAGC	1 cut(s)	499
BseYI	CCCAGC	1 cut(s)	5
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	101, 372
BshNI	GGYRCC	2 cut(s)	107, 422
BshVI	ATCGAT	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	419
BsiHKCI	CYCGRG	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	3 cut(s)	260, 341, 355
BslI	CCNNNNNNNGG	2 cut(s)	104, 401
BsmAI	GTCTC	2 cut(s)	129, 162
BsmFI	GGGAC	3 cut(s)	260, 341, 355
BsnI	GGCC	2 cut(s)	101, 372
BsoBI	CYCGRG	1 cut(s)	418
Bsp1286I	GDGCHC	1 cut(s)	419
BspACI	CCGC	4 cut(s)	137, 359, 361, 458
BspANI	GGCC	2 cut(s)	101, 372
BspCNI	CTCAG	2 cut(s)	154, 334
BspDI	ATCGAT	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	361
BspLI	GGNNCC	3 cut(s)	109, 329, 424
BspT107I	GGYRCC	2 cut(s)	107, 422
BssECI	CCNNGG	2 cut(s)	359, 481
BssSI	CACGAG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	481
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	346
BstBAI	YACGTR	1 cut(s)	500
BstC8I	GCNNGC	2 cut(s)	139, 460
BstDEI	CTNAG	3 cut(s)	142, 162, 321
BstDSI	CCRYGG	1 cut(s)	359
BstF5I	GGATG	1 cut(s)	460
BstFNI	CGCG	1 cut(s)	361
BstMAI	GTCTC	2 cut(s)	129, 162
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstPAI	GACNNNNGTC	1 cut(s)	333
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	499
BstXI	CCANNNNNNTGG	1 cut(s)	338
Bsu15I	ATCGAT	1 cut(s)	546
Bsu36I	CCTNAGG	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	101, 372
BsuTUI	ATCGAT	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	139, 460
CaiI	CAGNNNCTG	1 cut(s)	440
Cfr13I	GGNCC	1 cut(s)	328
Cfr42I	CCGCGG	1 cut(s)	362
ClaI	ATCGAT	1 cut(s)	546
Csp6I	GTAC	2 cut(s)	108, 501
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	8 cut(s)	25, 55, 101, 141, 187, 197, 372, 462
CviKI_1	RGCY	8 cut(s)	25, 55, 101, 141, 187, 197, 372, 462
CviQI	GTAC	2 cut(s)	108, 501
DdeI	CTNAG	3 cut(s)	142, 162, 321
EaeI	YGGCCR	2 cut(s)	99, 370
Eco130I	CCWWGG	1 cut(s)	481
Eco47I	GGWCC	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	1 cut(s)	341
FaiI	YATR	8 cut(s)	174, 179, 211, 339, 378, 525, 536, 556
FaqI	GGGAC	3 cut(s)	260, 341, 355
FatI	CATG	1 cut(s)	337
FauI	CCCGC	3 cut(s)	130, 366, 451
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	2 cut(s)	188, 482
GluI	GCNGC	1 cut(s)	513
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	101, 372
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	1 cut(s)	341
HinfI	GANTC	3 cut(s)	11, 83, 538
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	6 cut(s)	20, 47, 161, 247, 395, 488
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	3 cut(s)	67, 250, 288
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	221, 499
HpyCH4V	TGCA	1 cut(s)	515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	3 cut(s)	142, 162, 321
HpySE526I	ACGT	2 cut(s)	221, 499
Hsp92II	CATG	1 cut(s)	341
KpnI	GGTACC	1 cut(s)	111
KspI	CCGCGG	1 cut(s)	362
LmnI	GCTCC	2 cut(s)	22, 363
LpnPI	CCDG	5 cut(s)	19, 60, 111, 174, 408
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	445, 552
MaeI	CTAG	2 cut(s)	188, 482
MaeII	ACGT	2 cut(s)	221, 499
MaeIII	GTNAC	1 cut(s)	495
MboII	GAAGA	2 cut(s)	35, 238
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	419
MlsI	TGGCCA	1 cut(s)	372
MluCI	AATT	5 cut(s)	15, 87, 114, 231, 291
MluNI	TGGCCA	1 cut(s)	372
MlyI	GAGTC	1 cut(s)	532
MnlI	CCTC	4 cut(s)	157, 162, 318, 484
Mox20I	TGGCCA	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	372
MseI	TTAA	1 cut(s)	113
MslI	CAYNNNNRTG	2 cut(s)	336, 412
Msp20I	TGGCCA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	1 cut(s)	431
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	3 cut(s)	109, 329, 424
NmuCI	GTSAC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	11, 83
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
Ppu21I	YACGTR	1 cut(s)	500
PshAI	GACNNNNGTC	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	109, 329, 424
PspPI	GGNCC	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	440
RsaI	GTAC	2 cut(s)	109, 502
RsaNI	GTAC	2 cut(s)	108, 501
RseI	CAYNNNNRTG	2 cut(s)	336, 412
SacII	CCGCGG	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	1 cut(s)	513
Sau96I	GGNCC	1 cut(s)	328
SchI	GAGTC	1 cut(s)	532
SduI	GDGCHC	1 cut(s)	419
SfaNI	GCATC	2 cut(s)	445, 552
Sfr303I	CCGCGG	1 cut(s)	362
SgrBI	CCGCGG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	328
SmiMI	CAYNNNNRTG	2 cut(s)	336, 412
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	5 cut(s)	15, 87, 114, 231, 291
SsiI	CCGC	4 cut(s)	137, 359, 361, 458
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	188, 482
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	224, 502
TaqI	TCGA	2 cut(s)	387, 546
TasI	AATT	5 cut(s)	15, 87, 114, 231, 291
TfiI	GAWTC	2 cut(s)	11, 83
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	495
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	1 cut(s)	495
TspDTI	ATGAA	3 cut(s)	20, 224, 396
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	291
XmaJI	CCTAGG	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	15
XspI	CTAG	2 cut(s)	188, 482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.