Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

45939338 .. 45943226

Gene Structure 3889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG408800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATAATGTCTCTATTTGGTAGGGGTGAATGTGATGCGACGAGGCTGAAGATCACCGGACTAGATCAGGAAGTCACGACCTTGAAGAGGAAGCCGACAAAGGAAAACAAGGCTCTTGAAGGAATTGGAGGAGAAAGTTCCGGTGTTGAATGCATCGAAGGTGAGTTTGGCGGAAGCAGATGGAGAGGTGCAGCGTCTGAAGGAGATAAAGATACCCTAGCGCTGCTGTTGCTTGACGGCACAAATACCATGCCAGTATCCGGCTCCATAACTGGCCTTCTCACGGATAACGTGCCAGTATCCGGCTTCATAACTGGCCTTCTCATGCAACAATTTCCTGATTCGCGAACACATTATTACTCTGCTGTGTTCTTTCTCGCGTTTCCAGATTCACGGATATCATTACTATTTAATTCAACAAAAAACTTACTTGCTTACCTTCAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.18

Weight (kDa)

5.14

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	346, 380
AciI	CCGC	1 cut(s)	171
AcuI	CTGAAG	2 cut(s)	68, 219
AfeI	AGCGCT	1 cut(s)	222
AfiI	CCNNNNNNNGG	4 cut(s)	87, 260, 283, 302
AgsI	TTSAA	5 cut(s)	85, 119, 149, 417, 443
AjuI	GAANNNNNNNTTGG	2 cut(s)	150, 182
Alw26I	GTCTC	1 cut(s)	15
AlwNI	CAGNNNCTG	1 cut(s)	197
Aor51HI	AGCGCT	1 cut(s)	222
AoxI	GGCC	2 cut(s)	274, 316
ApeKI	GCWGC	2 cut(s)	191, 223
AspLEI	GCGC	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	38, 46, 173
BbvI	GCAGC	2 cut(s)	203, 210
BccI	CCATC	1 cut(s)	174
BceAI	ACGGC	1 cut(s)	253
BciVI	GTATCC	2 cut(s)	268, 310
BcoDI	GTCTC	1 cut(s)	15
BfaI	CTAG	3 cut(s)	62, 218, 448
BfoI	RGCGCY	1 cut(s)	224
BfuI	GTATCC	2 cut(s)	268, 310
BisI	GCNGC	2 cut(s)	192, 224
BlsI	GCNGC	2 cut(s)	193, 225
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	2 cut(s)	25, 162
BsaWI	WCCGGW	2 cut(s)	56, 140
Bsc4I	CCNNNNNNNGG	4 cut(s)	87, 260, 283, 302
Bse1I	ACTGG	4 cut(s)	254, 277, 296, 319
BseLI	CCNNNNNNNGG	4 cut(s)	87, 260, 283, 302
BseNI	ACTGG	4 cut(s)	254, 277, 296, 319
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	203, 210
BsgI	GTGCAG	1 cut(s)	210
Bsh1236I	CGCG	2 cut(s)	346, 380
BshFI	GGCC	2 cut(s)	276, 318
BsiSI	CCGG	4 cut(s)	57, 141, 261, 303
BslI	CCNNNNNNNGG	4 cut(s)	87, 260, 283, 302
BsmAI	GTCTC	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	276, 318
Bsp143I	GATC	2 cut(s)	51, 64
Bsp68I	TCGCGA	1 cut(s)	346
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	276, 318
BspFNI	CGCG	2 cut(s)	346, 380
BspLI	GGNNCC	1 cut(s)	265
BsrI	ACTGG	4 cut(s)	254, 277, 296, 319
BssMI	GATC	2 cut(s)	51, 64
Bst6I	CTCTTC	1 cut(s)	80
BstENI	CCTNNNNNAGG	1 cut(s)	85
BstFNI	CGCG	2 cut(s)	346, 380
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	54, 67
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	2 cut(s)	51, 64
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstUI	CGCG	2 cut(s)	346, 380
BstV1I	GCAGC	2 cut(s)	203, 210
BsuI	GTATCC	2 cut(s)	268, 310
BsuRI	GGCC	2 cut(s)	276, 318
BtuMI	TCGCGA	1 cut(s)	346
CaiI	CAGNNNCTG	1 cut(s)	197
CfoI	GCGC	1 cut(s)	223
CseI	GACGC	1 cut(s)	183
CviAII	CATG	2 cut(s)	250, 325
CviJI	RGCY	7 cut(s)	46, 94, 113, 264, 276, 306, 318
CviKI_1	RGCY	7 cut(s)	46, 94, 113, 264, 276, 306, 318
DpnI	GATC	2 cut(s)	53, 66
DpnII	GATC	2 cut(s)	51, 64
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
EciI	GGCGGA	1 cut(s)	186
Eco32I	GATATC	1 cut(s)	399
Eco47III	AGCGCT	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	68, 219
EcoNI	CCTNNNNNAGG	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	155
FaeI	CATG	2 cut(s)	253, 328
FaiI	YATR	4 cut(s)	251, 269, 311, 326
FatI	CATG	2 cut(s)	249, 324
Fnu4HI	GCNGC	2 cut(s)	192, 224
Fsp4HI	GCNGC	2 cut(s)	192, 224
FspBI	CTAG	3 cut(s)	62, 218, 448
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	2 cut(s)	192, 224
HaeII	RGCGCY	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	276, 318
HapII	CCGG	4 cut(s)	57, 141, 261, 303
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	253, 328
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HinfI	GANTC	2 cut(s)	341, 389
HpaII	CCGG	4 cut(s)	57, 141, 261, 303
HphI	GGTGA	3 cut(s)	38, 46, 173
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	6 cut(s)	68, 76, 116, 338, 345, 386
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	6 cut(s)	113, 152, 194, 287, 329, 449
HpyCH4IV	ACGT	1 cut(s)	291
HpyCH4V	TGCA	3 cut(s)	153, 191, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	291
Hsp92II	CATG	2 cut(s)	253, 328
HspAI	GCGC	1 cut(s)	221
Kzo9I	GATC	2 cut(s)	51, 64
LmnI	GCTCC	1 cut(s)	269
Lsp1109I	GCAGC	2 cut(s)	203, 210
LweI	GCATC	2 cut(s)	25, 162
MaeI	CTAG	3 cut(s)	62, 218, 448
MaeII	ACGT	1 cut(s)	291
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	53, 66
MboI	GATC	2 cut(s)	51, 64
MboII	GAAGA	2 cut(s)	61, 97
MluCI	AATT	3 cut(s)	123, 332, 412
MnlI	CCTC	4 cut(s)	36, 81, 122, 179
Mph1103I	ATGCAT	1 cut(s)	155
MseI	TTAA	1 cut(s)	411
MspI	CCGG	4 cut(s)	57, 141, 261, 303
Mva1269I	GAATGC	1 cut(s)	155
MvnI	CGCG	2 cut(s)	346, 380
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	2 cut(s)	51, 64
NlaIII	CATG	2 cut(s)	253, 328
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	73
NruI	TCGCGA	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	155
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	341, 389
PkrI	GCNGC	2 cut(s)	193, 225
PspN4I	GGNNCC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	192, 224
Sau3AI	GATC	2 cut(s)	51, 64
SetI	ASST	5 cut(s)	83, 163, 190, 294, 441
SfaNI	GCATC	2 cut(s)	25, 162
Sse9I	AATT	3 cut(s)	123, 332, 412
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	3 cut(s)	62, 218, 448
TaiI	ACGT	1 cut(s)	294
TaqI	TCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	123, 332, 412
TfiI	GAWTC	2 cut(s)	341, 389
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	191, 223
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	298
TspGWI	ACGGA	2 cut(s)	299, 409
XagI	CCTNNNNNAGG	1 cut(s)	85
XspI	CTAG	3 cut(s)	62, 218, 448
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.