Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Reverse (-)

48410988 .. 48411709

Gene Structure 722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009185

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCAGAGGAGTATGAGGTGAAGGACAGGTCTTATCTAGCTGACATTGCCAAGATCTCGATTAAGATGAATTTTTACTACCATATAACTCTGAGCAACTGCTCACCACTGGACGCTAAGCAAAAGATCTTGGGGGAGATAATCAAGCTTGGTCACAAGATTTTTGTGAATAAAGAGTTTGAGGAGGAGAGCGAGCTAAAGAGATGTCATTGTCCGGAAGGACCAAGAAAAGGAGGAAGCTTTAGAAAGGAGCGCGAGCGTGCCTGCTCAAGCCAAGCTATGAAGAATTCTCTTTCTGGTGCCATCGATATTTTTGAGCGGGACCTAAAGGAGGACAAGAAGCCAACTGGTCCACAAAATGAGCGGCTCAACATGCTATTTAAGCTCGCATGCGATTCACATTTTGTATTCTTCGGTGACAATAAGTTAATTAATCTGCAGGCCATGGCAGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

153

Amino Acids

17.44

Weight (kDa)

8.23

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	299
AccBSI	CCGCTC	2 cut(s)	319, 364
AccII	CGCG	1 cut(s)	255
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	2 cut(s)	319, 364
AcsI	RAATTY	2 cut(s)	70, 286
AfiI	CCNNNNNNNGG	2 cut(s)	230, 331
AluBI	AGCT	6 cut(s)	41, 148, 196, 240, 278, 385
AluI	AGCT	6 cut(s)	41, 148, 196, 240, 278, 385
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	70, 286
AseI	ATTAAT	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	255
AspS9I	GGNCC	3 cut(s)	221, 322, 350
AsuHPI	GGTGA	3 cut(s)	31, 96, 428
AvaII	GGWCC	3 cut(s)	221, 322, 350
BanI	GGYRCC	1 cut(s)	299
BccI	CCATC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	437
BglII	AGATCT	2 cut(s)	54, 126
BisI	GCNGC	2 cut(s)	365, 450
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	2 cut(s)	366, 451
Bme18I	GGWCC	3 cut(s)	221, 322, 350
BmgT120I	GGNCC	3 cut(s)	221, 322, 350
BmiI	GGNNCC	2 cut(s)	301, 323
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	444
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 331
Bse1I	ACTGG	2 cut(s)	114, 352
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	214
BseCI	ATCGAT	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	230, 331
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	114, 352
BseRI	GAGGAG	3 cut(s)	23, 197, 200
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	299
BshVI	ATCGAT	1 cut(s)	306
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	230, 331
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	443
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	54, 126
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	2 cut(s)	319, 364
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	84
BspDI	ATCGAT	1 cut(s)	306
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	301, 323
BspMAI	CTGCAG	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	299
BsrBI	CCGCTC	2 cut(s)	319, 364
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	114, 352
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	2 cut(s)	54, 126
BssT1I	CCWWGG	1 cut(s)	444
BstC8I	GCNNGC	7 cut(s)	194, 257, 261, 265, 387, 391, 441
BstDEI	CTNAG	2 cut(s)	92, 117
BstDSI	CCRYGG	1 cut(s)	444
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	57, 129
BstMBI	GATC	2 cut(s)	54, 126
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 373, 382, 449
BstNSI	RCATGY	2 cut(s)	376, 393
BstSFI	CTRYAG	1 cut(s)	437
BstUI	CGCG	1 cut(s)	255
BstX2I	RGATCY	2 cut(s)	54, 126
BstYI	RGATCY	2 cut(s)	54, 126
Bsu15I	ATCGAT	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	443
BsuTUI	ATCGAT	1 cut(s)	306
BtgI	CCRYGG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	7 cut(s)	194, 257, 261, 265, 387, 391, 441
CfoI	GCGC	1 cut(s)	255
Cfr13I	GGNCC	3 cut(s)	221, 322, 350
ClaI	ATCGAT	1 cut(s)	306
CseI	GACGC	1 cut(s)	122
CviAII	CATG	3 cut(s)	373, 390, 445
DdeI	CTNAG	2 cut(s)	92, 117
DpnI	GATC	2 cut(s)	56, 128
DpnII	GATC	2 cut(s)	54, 126
Eco130I	CCWWGG	1 cut(s)	444
Eco47I	GGWCC	3 cut(s)	221, 322, 350
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	376, 393, 448
FaiI	YATR	7 cut(s)	15, 84, 86, 281, 374, 391, 446
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	3 cut(s)	372, 389, 444
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	2 cut(s)	365, 450
Fsp4HI	GCNGC	2 cut(s)	365, 450
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	2 cut(s)	365, 450
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	215
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	376, 393, 448
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HindIII	AAGCTT	2 cut(s)	146, 238
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	3 cut(s)	31, 96, 428
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	2 cut(s)	58, 215
Hpy8I	GTNNAC	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	16, 212
HpyCH4V	TGCA	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 373, 382, 449
HpyF3I	CTNAG	2 cut(s)	92, 117
Hsp92II	CATG	3 cut(s)	376, 393, 448
HspAI	GCGC	1 cut(s)	253
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	54, 126
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	7 cut(s)	13, 95, 228, 277, 282, 333, 425
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	2 cut(s)	152, 416
MalI	GATC	2 cut(s)	56, 128
MbiI	CCGCTC	2 cut(s)	319, 364
MboI	GATC	2 cut(s)	54, 126
MboII	GAAGA	2 cut(s)	295, 403
MflI	RGATCY	2 cut(s)	54, 126
MluCI	AATT	3 cut(s)	70, 286, 429
MnlI	CCTC	5 cut(s)	10, 175, 178, 227, 325
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	4 cut(s)	63, 381, 428, 432
MspI	CCGG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	47, 373, 382, 449
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	2 cut(s)	54, 126
NlaIII	CATG	3 cut(s)	376, 393, 448
NlaIV	GGNNCC	2 cut(s)	301, 323
NmuCI	GTSAC	2 cut(s)	152, 416
NspI	RCATGY	2 cut(s)	376, 393
PacI	TTAATTAA	1 cut(s)	432
PaeI	GCATGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	2 cut(s)	366, 451
PpuMI	RGGWCCY	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	301, 323
PspPI	GGNCC	3 cut(s)	221, 322, 350
PspPPI	RGGWCCY	1 cut(s)	322
PstI	CTGCAG	1 cut(s)	441
PsuI	RGATCY	2 cut(s)	54, 126
SaqAI	TTAA	4 cut(s)	63, 381, 428, 432
SatI	GCNGC	2 cut(s)	365, 450
Sau3AI	GATC	2 cut(s)	54, 126
Sau96I	GGNCC	3 cut(s)	221, 322, 350
SetI	ASST	9 cut(s)	21, 32, 43, 150, 198, 242, 280, 327, 387
SfcI	CTRYAG	1 cut(s)	437
SinI	GGWCC	3 cut(s)	221, 322, 350
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	3 cut(s)	70, 286, 429
SsiI	CCGC	2 cut(s)	319, 364
SspMI	CTAG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	444
TaqI	TCGA	2 cut(s)	59, 306
TasI	AATT	3 cut(s)	70, 286, 429
TauI	GCSGC	1 cut(s)	367
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	4 cut(s)	63, 381, 428, 432
Tru9I	TTAA	4 cut(s)	63, 381, 428, 432
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	2 cut(s)	152, 416
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	2 cut(s)	152, 416
TspDTI	ATGAA	2 cut(s)	83, 296
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	3 cut(s)	221, 322, 350
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	70, 286
XceI	RCATGY	2 cut(s)	376, 393
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.