Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

18849155 .. 18850078

Gene Structure 924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG089000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGGGTAAGAAACCTGAATTTAAATTACCCAAGAAGTGTGCAAGGAATGCTGACTCAGAAGGCCCTTTAAGCCATCAAGAGGAAAGGTCAGAAGCGGAAGGGATGGAAGAATGTGACATTTATACCGGGACTGAACAAATAGGTTTTCTTGATGATGGTATAGAGATTAATCTGCCTGAGAGATCGATGATTGTGGATGAAATTGAAGAGATGAGGAAACAATACTGCATTCTGGAAATCGTTGGACTTCGTCTGTTGGAGAAGGGCGAACTTGCGCATAACCTTCCTGATGGTCATATAGACGTTCATCATGCGCAAGTCGCAACTGAAGATGGAGGATTTGCACTATCTGCTGTGCGGCCGGGAGTTGGCGCTTTTAAAGCGGATAGAGTATATAGTAAAGGAGAAGGGTCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.44

Weight (kDa)

4.8

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	279, 318
AciI	CCGC	4 cut(s)	5, 98, 361, 386
AcoI	YGGCCR	1 cut(s)	362
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	351
AfiI	CCNNNNNNNGG	2 cut(s)	82, 371
AgsI	TTSAA	1 cut(s)	209
AoxI	GGCC	2 cut(s)	64, 362
ApoI	RAATTY	1 cut(s)	20
AseI	ATTAAT	1 cut(s)	171
AspLEI	GCGC	3 cut(s)	280, 319, 377
AspS9I	GGNCC	2 cut(s)	65, 414
AsuC2I	CCSGG	2 cut(s)	130, 366
AvaII	GGWCC	1 cut(s)	414
BccI	CCATC	5 cut(s)	84, 100, 152, 287, 329
BcnI	CCSGG	2 cut(s)	130, 366
BfoI	RGCGCY	1 cut(s)	378
BisI	GCNGC	1 cut(s)	362
BlsI	GCNGC	1 cut(s)	363
Bme1390I	CCNGG	2 cut(s)	130, 366
Bme18I	GGWCC	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	65, 414
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	130, 366
BpuMI	CCSGG	2 cut(s)	130, 366
Bsa29I	ATCGAT	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 371
BseCI	ATCGAT	1 cut(s)	188
BseGI	GGATG	2 cut(s)	111, 205
BseLI	CCNNNNNNNGG	2 cut(s)	82, 371
BseMII	CTCAG	2 cut(s)	72, 171
BseX3I	CGGCCG	1 cut(s)	362
Bsh1285I	CGRYCG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	66, 364
BshVI	ATCGAT	1 cut(s)	188
BsiEI	CGRYCG	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	129, 365
BslFI	GGGAC	1 cut(s)	145
BslI	CCNNNNNNNGG	2 cut(s)	82, 371
BsmFI	GGGAC	1 cut(s)	145
BsmI	GAATGC	2 cut(s)	55, 231
BsnI	GGCC	2 cut(s)	66, 364
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	4 cut(s)	5, 98, 361, 386
BspANI	GGCC	2 cut(s)	66, 364
BspCNI	CTCAG	2 cut(s)	71, 172
BspDI	ATCGAT	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	415
BssMI	GATC	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	2 cut(s)	50, 353
BstDEI	CTNAG	2 cut(s)	58, 180
BstF5I	GGATG	2 cut(s)	111, 205
BstH2I	RGCGCY	1 cut(s)	378
BstHHI	GCGC	3 cut(s)	280, 319, 377
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMCI	CGRYCG	1 cut(s)	365
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 72, 323, 353, 383
BstSCI	CCNGG	2 cut(s)	128, 364
BstZI	CGGCCG	1 cut(s)	362
Bsu15I	ATCGAT	1 cut(s)	188
BsuRI	GGCC	2 cut(s)	66, 364
BsuTUI	ATCGAT	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	111, 205
CfoI	GCGC	3 cut(s)	280, 319, 377
Cfr13I	GGNCC	2 cut(s)	65, 414
ClaI	ATCGAT	1 cut(s)	188
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	3 cut(s)	66, 75, 364
CviKI_1	RGCY	3 cut(s)	66, 75, 364
DdeI	CTNAG	2 cut(s)	58, 180
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
DraI	TTTAAA	2 cut(s)	25, 382
EaeI	YGGCCR	1 cut(s)	362
EagI	CGGCCG	1 cut(s)	362
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	414
Eco52I	CGGCCG	1 cut(s)	362
Eco57I	CTGAAG	1 cut(s)	351
EcoO109I	RGGNCCY	2 cut(s)	65, 414
FaeI	CATG	1 cut(s)	317
FaiI	YATR	8 cut(s)	126, 164, 282, 300, 302, 315, 397, 399
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	362
FokI	GGATG	2 cut(s)	118, 212
Fsp4HI	GCNGC	1 cut(s)	362
FspI	TGCGCA	2 cut(s)	279, 318
GlaI	GCGC	3 cut(s)	279, 318, 376
GluI	GCNGC	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	66, 364
HapII	CCGG	2 cut(s)	129, 365
HhaI	GCGC	3 cut(s)	280, 319, 377
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	3 cut(s)	278, 317, 375
HinP1I	GCGC	3 cut(s)	278, 317, 375
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	129, 365
Hpy188I	TCNGA	2 cut(s)	61, 94
Hpy188III	TCNNGA	4 cut(s)	80, 152, 236, 290
HpyAV	CCTTC	5 cut(s)	56, 95, 259, 296, 404
HpyCH4IV	ACGT	1 cut(s)	306
HpyCH4V	TGCA	3 cut(s)	44, 231, 347
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 72, 323, 353, 383
HpyF3I	CTNAG	2 cut(s)	58, 180
HpySE526I	ACGT	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	3 cut(s)	278, 317, 375
Kzo9I	GATC	1 cut(s)	185
LpnPI	CCDG	6 cut(s)	30, 142, 192, 221, 303, 378
MaeII	ACGT	1 cut(s)	306
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	3 cut(s)	122, 221, 344
MluCI	AATT	3 cut(s)	20, 26, 204
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	226, 240
MnlI	CCTC	3 cut(s)	76, 210, 332
MseI	TTAA	5 cut(s)	24, 71, 171, 381, 421
MspI	CCGG	2 cut(s)	129, 365
MspR9I	CCNGG	2 cut(s)	130, 366
Mva1269I	GAATGC	2 cut(s)	55, 231
MwoI	GCNNNNNNNGC	5 cut(s)	50, 72, 323, 353, 383
NciI	CCSGG	2 cut(s)	130, 366
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	116
NsbI	TGCGCA	2 cut(s)	279, 318
PctI	GAATGC	2 cut(s)	55, 231
PflFI	GACNNNGTC	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	363
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PpuMI	RGGWCCY	1 cut(s)	414
PshBI	ATTAAT	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	414
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	2 cut(s)	65, 414
PspPPI	RGGWCCY	1 cut(s)	414
PsyI	GACNNNGTC	1 cut(s)	252
SaqAI	TTAA	5 cut(s)	24, 71, 171, 381, 421
SatI	GCNGC	1 cut(s)	362
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	2 cut(s)	65, 414
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	130, 366
SetI	ASST	5 cut(s)	19, 92, 148, 288, 309
SinI	GGWCC	1 cut(s)	414
SmiI	ATTTAAAT	1 cut(s)	25
Sse9I	AATT	3 cut(s)	20, 26, 204
SsiI	CCGC	4 cut(s)	5, 98, 361, 386
StyD4I	CCNGG	2 cut(s)	128, 364
SwaI	ATTTAAAT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	188
TasI	AATT	3 cut(s)	20, 26, 204
TauI	GCSGC	1 cut(s)	364
Tru1I	TTAA	5 cut(s)	24, 71, 171, 381, 421
Tru9I	TTAA	5 cut(s)	24, 71, 171, 381, 421
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	216, 299
Tth111I	GACNNNGTC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	414
VspI	ATTAAT	1 cut(s)	171
XapI	RAATTY	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.