FvH4_6g20922

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002036
Physical Location & Seq
Forward (+)
14425624 .. 14434017
8394 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20922.t1

Sequence Viewer

Length: 372 bp
ATGGTGCTAATGCAGAAGCTGAGAAGGGGTGCTAGTGCACAAGCCAAAGAGGATGCTACTGCACAAGCCGAAGAAGGTGCTACTGAGAAGGACATAGACAATAATGAAAGAAGTGCTGAACGTCAACGACCACAAGATGGGCCATTGGCTGAAGTGTTTGAGAAGCTTGAGCATTTCTCCAATTATCGCCAATATCAGAGCTTGAAGCAGCAAGGAATACTGAGCGTGAATGATCTGGAAGTGCAGCGAGTGTTGGATGAGAAGTATAATGTGTCAGCCTCTGAGGAATCAGAGAGTGGTTCTAGCGCAGTCTACTCTGATTCCTCAAGTAGCGACGACGAATCGAGTTTGGGAGACTCTCAAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.57

Weight (kDa)

4.41

Isoelectric Point (pI)

55.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AccI GTMKAC 1 cut(s) 312
AcuI CTGAAG 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 205
AluBI AGCT 5 cut(s) 19, 166, 201, 365, 369
AluI AGCT 5 cut(s) 19, 166, 201, 365, 369
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 348
Alw44I GTGCAC 1 cut(s) 36
AlwNI CAGNNNCTG 2 cut(s) 19, 281
AoxI GGCC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 208, 244
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 140
AsuNHI GCTAGC 1 cut(s) 365
BaeGI GKGCMC 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 220, 256
BccI CCATC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 4 cut(s) 33, 303, 366, 370
BisI GCNGC 2 cut(s) 209, 245
BlsI GCNGC 2 cut(s) 210, 246
BmgT120I GGNCC 1 cut(s) 140
BmsI GCATC 1 cut(s) 43
BmtI GCTAGC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpuEI CTTGAG 3 cut(s) 188, 310, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 137
BseGI GGATG 2 cut(s) 58, 262
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 4 cut(s) 11, 75, 212, 273
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 2 cut(s) 220, 256
BsgI GTGCAG 2 cut(s) 45, 263
BshFI GGCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 348
BsnI GGCC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 232
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 4 cut(s) 12, 76, 213, 274
BspOI GCTAGC 1 cut(s) 369
BssMI GATC 1 cut(s) 232
BstC8I GCNNGC 1 cut(s) 367
BstDEI CTNAG 4 cut(s) 20, 84, 221, 282
BstF5I GGATG 2 cut(s) 58, 262
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 1 cut(s) 232
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 220, 256
BsuRI GGCC 1 cut(s) 142
BtsCI GGATG 2 cut(s) 58, 262
Cac8I GCNNGC 1 cut(s) 367
CaiI CAGNNNCTG 2 cut(s) 19, 281
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 140
DdeI CTNAG 4 cut(s) 20, 84, 221, 282
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 171
FaiI YATR 2 cut(s) 95, 267
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 209, 245
FokI GGATG 2 cut(s) 65, 269
Fsp4HI GCNGC 2 cut(s) 209, 245
FspBI CTAG 4 cut(s) 33, 303, 366, 370
GlaI GCGC 1 cut(s) 307
GluI GCNGC 2 cut(s) 209, 245
HaeIII GGCC 1 cut(s) 142
HhaI GCGC 1 cut(s) 308
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 4 cut(s) 287, 320, 341, 356
Hpy166II GTNNAC 3 cut(s) 38, 125, 313
Hpy188I TCNGA 4 cut(s) 198, 283, 292, 319
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 3 cut(s) 38, 125, 313
Hpy99I CGWCG 2 cut(s) 338, 341
HpyAV CCTTC 3 cut(s) 18, 68, 82
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 13, 38, 62, 244
HpyF3I CTNAG 4 cut(s) 20, 84, 221, 282
HpySE526I ACGT 1 cut(s) 121
HspAI GCGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 232
LpnPI CCDG 1 cut(s) 221
Lsp1109I GCAGC 2 cut(s) 220, 256
LweI GCATC 1 cut(s) 43
MaeI CTAG 4 cut(s) 33, 303, 366, 370
MaeII ACGT 1 cut(s) 121
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 1 cut(s) 181
MlyI GAGTC 1 cut(s) 350
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 4 cut(s) 43, 277, 289, 334
NdeII GATC 1 cut(s) 232
NheI GCTAGC 1 cut(s) 365
PfeI GAWTC 3 cut(s) 287, 320, 341
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 2 cut(s) 210, 246
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 140
PstNI CAGNNNCTG 2 cut(s) 19, 281
SatI GCNGC 2 cut(s) 209, 245
Sau3AI GATC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 140
SchI GAGTC 1 cut(s) 350
SduI GDGCHC 1 cut(s) 40
SetI ASST 7 cut(s) 21, 79, 124, 168, 203, 367, 371
SfaNI GCATC 1 cut(s) 43
SmlI CTYRAG 3 cut(s) 167, 325, 360
SmoI CTYRAG 3 cut(s) 167, 325, 360
Sse9I AATT 1 cut(s) 181
SspMI CTAG 4 cut(s) 33, 303, 366, 370
TaiI ACGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 344
TasI AATT 1 cut(s) 181
TfiI GAWTC 3 cut(s) 287, 320, 341
TseI GCWGC 2 cut(s) 208, 244
TspDTI ATGAA 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 137
VneI GTGCAC 1 cut(s) 36
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 4 cut(s) 33, 303, 366, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.