Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000146.1

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

47248 .. 47874

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000146.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggcggaagagtatgaggtgaaggatgaatcgtaccttgctgaggttgccaaaatcttaggcaagatgaatttctatgaccacataactctgggtgattgctcacctctggaggctaagcaaaagatcttgggggaagtgatcaagcttggccataaaatctttgtaagtaaagagttcgaagaagagagcaaattgaaaaggcaactgttggtggccaggggtgaatgtgacgaggcgaggctcaagattgctgggctgaacaaagaagtcacaaccttgaagaagaaactggagaaacaaactaaggagaacaaggctttggaatcccagggtcatgatcagaagcgggccgggagagagccattgaccaaagagctggaggatagggatgtgaaccttaacttggcggatgcggatgaggaggtgcagcggctgaaaaaggagattaaagatgtcactgtcctgagggacaaggaaagagcggaagccatggagaaggagcgtgagcaagcccactcaagtcttgccatgcataattctctctctggagccattaacatctttgagcggcatctgatggagccatggaggacaagaagcacaccgcgccgggctgttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

208

Amino Acids

23.98

Weight (kDa)

6.37

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	485, 571
AccII	CGCG	1 cut(s)	610
AciI	CCGC	8 cut(s)	5, 349, 410, 416, 433, 485, 571, 608
AcoI	YGGCCR	2 cut(s)	151, 216
AcsI	RAATTY	1 cut(s)	70
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	43, 406
AgsI	TTSAA	3 cut(s)	199, 283, 623
AjnI	CCWGG	2 cut(s)	218, 330
AjuI	GAANNNNNNNTTGG	4 cut(s)	305, 337, 389, 421
AluBI	AGCT	2 cut(s)	148, 379
AluI	AGCT	2 cut(s)	148, 379
AlwNI	CAGNNNCTG	1 cut(s)	436
AoxI	GGCC	3 cut(s)	151, 216, 351
ApeKI	GCWGC	1 cut(s)	430
ApoI	RAATTY	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	2 cut(s)	355, 614
AsuHPI	GGTGA	4 cut(s)	31, 96, 107, 236
AsuII	TTCGAA	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	467
BalI	TGGCCA	2 cut(s)	153, 218
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	574
BciT130I	CCWGG	2 cut(s)	220, 332
BclI	TGATCA	2 cut(s)	141, 340
BcnI	CCSGG	2 cut(s)	355, 614
BglII	AGATCT	1 cut(s)	126
BisI	GCNGC	3 cut(s)	431, 434, 572
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	3 cut(s)	432, 435, 573
Bme1390I	CCNGG	4 cut(s)	220, 332, 355, 614
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	553, 585
BmrFI	CCNGG	4 cut(s)	220, 332, 355, 614
BmsI	GCATC	2 cut(s)	403, 583
BpmI	CTGGAG	4 cut(s)	131, 314, 401, 570
Bpu10I	CCTNAGC	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	230, 505
BpuMI	CCSGG	2 cut(s)	355, 614
BsaJI	CCNNGG	5 cut(s)	219, 330, 331, 492, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 406
Bse1I	ACTGG	1 cut(s)	297
Bse21I	CCTNAGG	1 cut(s)	467
BseBI	CCWGG	2 cut(s)	220, 332
BseDI	CCNNGG	5 cut(s)	219, 330, 331, 492, 587
BseGI	GGATG	4 cut(s)	31, 397, 418, 424
BseLI	CCNNNNNNNGG	2 cut(s)	43, 406
BseMII	CTCAG	2 cut(s)	33, 458
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	442
BseYI	CCCAGC	1 cut(s)	254
BsgI	GTGCAG	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	610
BshFI	GGCC	3 cut(s)	153, 218, 353
BsiSI	CCGG	2 cut(s)	354, 613
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	43, 406
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	3 cut(s)	153, 218, 353
Bsp119I	TTCGAA	1 cut(s)	180
Bsp143I	GATC	3 cut(s)	126, 141, 340
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	2 cut(s)	492, 587
BspACI	CCGC	8 cut(s)	5, 349, 410, 416, 433, 485, 571, 608
BspANI	GGCC	3 cut(s)	153, 218, 353
BspCNI	CTCAG	2 cut(s)	34, 459
BspFNI	CGCG	1 cut(s)	610
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	553, 585
BspT104I	TTCGAA	1 cut(s)	180
BsrBI	CCGCTC	2 cut(s)	485, 571
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	5 cut(s)	219, 330, 331, 492, 587
BssMI	GATC	3 cut(s)	126, 141, 340
BssT1I	CCWWGG	2 cut(s)	492, 587
Bst2UI	CCWGG	2 cut(s)	220, 332
Bst4CI	ACNGT	2 cut(s)	210, 463
Bst6I	CTCTTC	2 cut(s)	3, 180
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	351, 513
BstDEI	CTNAG	5 cut(s)	42, 58, 117, 306, 467
BstDSI	CCRYGG	2 cut(s)	492, 587
BstENI	CCTNNNNNAGG	1 cut(s)	41
BstF5I	GGATG	4 cut(s)	31, 397, 418, 424
BstFNI	CGCG	1 cut(s)	610
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	3 cut(s)	129, 144, 343
BstMBI	GATC	3 cut(s)	126, 141, 340
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 609
BstNI	CCWGG	2 cut(s)	220, 332
BstSCI	CCNGG	4 cut(s)	218, 330, 353, 612
BstUI	CGCG	1 cut(s)	610
BstV1I	GCAGC	1 cut(s)	442
BstX2I	RGATCY	1 cut(s)	126
BstXI	CCANNNNNNTGG	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	126
Bsu36I	CCTNAGG	1 cut(s)	467
BsuRI	GGCC	3 cut(s)	153, 218, 353
BtgI	CCRYGG	2 cut(s)	492, 587
BtsCI	GGATG	4 cut(s)	31, 397, 418, 424
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	351, 513
CaiI	CAGNNNCTG	1 cut(s)	436
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	612
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	4 cut(s)	338, 493, 532, 588
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	5 cut(s)	42, 58, 117, 306, 467
DpnI	GATC	3 cut(s)	128, 143, 342
DpnII	GATC	3 cut(s)	126, 141, 340
EaeI	YGGCCR	2 cut(s)	151, 216
Eam1104I	CTCTTC	2 cut(s)	3, 180
EarI	CTCTTC	2 cut(s)	3, 180
EciI	GGCGGA	2 cut(s)	20, 425
Eco130I	CCWWGG	2 cut(s)	492, 587
Eco81I	CCTNAGG	1 cut(s)	467
EcoNI	CCTNNNNNAGG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	218, 330
EcoT14I	CCWWGG	2 cut(s)	492, 587
EcoT22I	ATGCAT	1 cut(s)	537
ErhI	CCWWGG	2 cut(s)	492, 587
FaeI	CATG	4 cut(s)	341, 496, 535, 591
FaiI	YATR	9 cut(s)	15, 78, 86, 156, 339, 494, 533, 537, 589
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	4 cut(s)	337, 492, 531, 587
FauI	CCCGC	1 cut(s)	342
FbaI	TGATCA	2 cut(s)	141, 340
Fnu4HI	GCNGC	3 cut(s)	431, 434, 572
FokI	GGATG	4 cut(s)	38, 404, 425, 431
Fsp4HI	GCNGC	3 cut(s)	431, 434, 572
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	3 cut(s)	431, 434, 572
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	4 cut(s)	131, 314, 401, 570
HaeIII	GGCC	3 cut(s)	153, 218, 353
HapII	CCGG	2 cut(s)	354, 613
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	4 cut(s)	341, 496, 535, 591
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	29, 326
HpaII	CCGG	2 cut(s)	354, 613
HphI	GGTGA	4 cut(s)	31, 96, 107, 236
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	2 cut(s)	345, 579
Hpy188III	TCNNGA	5 cut(s)	110, 247, 338, 466, 549
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	2 cut(s)	16, 493
HpyCH4III	ACNGT	2 cut(s)	210, 463
HpyCH4V	TGCA	2 cut(s)	430, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 609
HpyF3I	CTNAG	5 cut(s)	42, 58, 117, 306, 467
Hsp92II	CATG	4 cut(s)	341, 496, 535, 591
HspAI	GCGC	1 cut(s)	610
Ksp22I	TGATCA	2 cut(s)	141, 340
Kzo9I	GATC	3 cut(s)	126, 141, 340
LmnI	GCTCC	3 cut(s)	502, 551, 583
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	2 cut(s)	403, 583
MaeIII	GTNAC	3 cut(s)	230, 271, 457
MalI	GATC	3 cut(s)	128, 143, 342
MbiI	CCGCTC	2 cut(s)	485, 571
MboI	GATC	3 cut(s)	126, 141, 340
MboII	GAAGA	5 cut(s)	20, 194, 197, 295, 298
MflI	RGATCY	1 cut(s)	126
MlsI	TGGCCA	2 cut(s)	153, 218
MluCI	AATT	3 cut(s)	70, 194, 538
MluNI	TGGCCA	2 cut(s)	153, 218
Mox20I	TGGCCA	2 cut(s)	153, 218
Mph1103I	ATGCAT	1 cut(s)	537
MscI	TGGCCA	2 cut(s)	153, 218
MseI	TTAA	3 cut(s)	402, 450, 558
Msp20I	TGGCCA	2 cut(s)	153, 218
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	2 cut(s)	354, 613
MspR9I	CCNGG	4 cut(s)	220, 332, 355, 614
MvaI	CCWGG	2 cut(s)	220, 332
MvnI	CGCG	1 cut(s)	610
MwoI	GCNNNNNNNGC	2 cut(s)	47, 609
NciI	CCSGG	2 cut(s)	355, 614
NcoI	CCATGG	2 cut(s)	492, 587
NdeII	GATC	3 cut(s)	126, 141, 340
NlaIII	CATG	4 cut(s)	341, 496, 535, 591
NlaIV	GGNNCC	2 cut(s)	553, 585
NmuCI	GTSAC	3 cut(s)	230, 271, 457
NsiI	ATGCAT	1 cut(s)	537
NspV	TTCGAA	1 cut(s)	180
PagI	TCATGA	1 cut(s)	337
PasI	CCCWGGG	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	29, 326
PkrI	GCNGC	3 cut(s)	432, 435, 573
Psp6I	CCWGG	2 cut(s)	218, 330
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	218, 330
PspN4I	GGNNCC	2 cut(s)	553, 585
PspPI	GGNCC	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	126
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	3 cut(s)	402, 450, 558
SatI	GCNGC	3 cut(s)	431, 434, 572
Sau3AI	GATC	3 cut(s)	126, 141, 340
Sau96I	GGNCC	1 cut(s)	351
ScrFI	CCNGG	4 cut(s)	220, 332, 355, 614
SetI	ASST	9 cut(s)	21, 39, 48, 109, 150, 281, 381, 402, 429
SfaNI	GCATC	2 cut(s)	403, 583
SfuI	TTCGAA	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	245, 520
SmoI	CTYRAG	2 cut(s)	245, 520
Sse9I	AATT	3 cut(s)	70, 194, 538
SsiI	CCGC	8 cut(s)	5, 349, 410, 416, 433, 485, 571, 608
StyD4I	CCNGG	4 cut(s)	218, 330, 353, 612
StyI	CCWWGG	2 cut(s)	492, 587
TaaI	ACNGT	2 cut(s)	210, 463
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	70, 194, 538
TauI	GCSGC	2 cut(s)	436, 574
TfiI	GAWTC	2 cut(s)	29, 326
Tru1I	TTAA	3 cut(s)	402, 450, 558
Tru9I	TTAA	3 cut(s)	402, 450, 558
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	3 cut(s)	230, 271, 457
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	3 cut(s)	230, 271, 457
TspDTI	ATGAA	2 cut(s)	42, 83
TspRI	CASTG	1 cut(s)	466
XagI	CCTNNNNNAGG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.