Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Reverse (-)

26705561 .. 26706070

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG164600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCCCGTAAGTGATTTCGTGCAAAAAGGGTCCCCCATAAACGCTTACCTTAGGAGACCGGCTAGGGGAGAAAGTATTCTCCAGAAACAGAAGGCGGGTAAGAAACCTGAATTTAAAGCATCCCGGAAGCGTGCGAGAATTTCTGAGTCTGAAGGTCCTTCAAATCGTCCAGAGGAGGAAAGAAATATTGAAGATCTTGAGGAGGGTGATGTTTATATTGGCACCAAGGCCATAGATCACCTTGAAGACGGAATGGAGATAAATCCGCCGCAGAGGTCGATGACTGCAGAAGAGATTAAGGGAATGAAAGAGCAGTATTCTATTTCGTACACTGTCAGGCTACGGCCATTGAGGAAGGGTGAGTCCGTGCATAATCCTCCCGAGGGTCACATAGTCATTCATCGTGCGCAAGTGAAGATGGCCTTGTATCTTCCATTGGATCCCTTCATGCAATGCATTCTTTCTGGGTTGAAAATTACTGTTGGGCAGGTTTCGCCTATCATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transposase_28

Protein Analysis

169

Amino Acids

19.08

Weight (kDa)

8.97

Isoelectric Point (pI)

71.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	478
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	3 cut(s)	95, 266, 269
AclWI	GGATC	2 cut(s)	434, 447
AcoI	YGGCCR	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	110, 138
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	65, 383
AgsI	TTSAA	4 cut(s)	162, 191, 245, 472
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	434, 447
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	3 cut(s)	228, 344, 420
ApoI	RAATTY	2 cut(s)	110, 138
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	2 cut(s)	30, 155
AsuC2I	CCSGG	1 cut(s)	124
AsuHPI	GGTGA	3 cut(s)	218, 230, 371
AvaI	CYCGRG	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	30, 155
AxyI	CCTNAGG	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	252
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	359
BcnI	CCSGG	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	478
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	30, 155
BmeT110I	CYCGRG	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	30, 155
BmiI	GGNNCC	4 cut(s)	31, 32, 223, 441
BmrFI	CCNGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	225, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 383
Bse118I	RCCGGY	1 cut(s)	58
Bse21I	CCTNAGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	225, 381
BseGI	GGATG	1 cut(s)	119
BseLI	CCNNNNNNNGG	2 cut(s)	65, 383
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	188, 215
BshFI	GGCC	3 cut(s)	230, 346, 422
BshNI	GGYRCC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	2 cut(s)	59, 124
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	65, 383
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	3 cut(s)	230, 346, 422
Bso31I	GGTCTC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	380
Bsp143I	GATC	3 cut(s)	193, 235, 439
BspACI	CCGC	3 cut(s)	95, 266, 269
BspANI	GGCC	3 cut(s)	230, 346, 422
BspCNI	CTCAG	1 cut(s)	136
BspLI	GGNNCC	4 cut(s)	31, 32, 223, 441
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	2 cut(s)	434, 447
BspT107I	GGYRCC	1 cut(s)	221
BspTNI	GGTCTC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	458
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	2 cut(s)	225, 381
BssMI	GATC	3 cut(s)	193, 235, 439
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	334, 481
Bst6I	CTCTTC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	50, 144
BstF5I	GGATG	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	3 cut(s)	196, 238, 442
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	3 cut(s)	193, 235, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	493, 502
BstSCI	CCNGG	1 cut(s)	122
BstSFI	CTRYAG	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	252
BstX2I	RGATCY	2 cut(s)	193, 439
BstYI	RGATCY	2 cut(s)	193, 439
Bsu36I	CCTNAGG	1 cut(s)	50
BsuRI	GGCC	3 cut(s)	230, 346, 422
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	478
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	30, 155
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	2 cut(s)	448, 502
CviJI	RGCY	5 cut(s)	62, 230, 340, 346, 422
CviKI_1	RGCY	5 cut(s)	62, 230, 340, 346, 422
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	2 cut(s)	50, 144
DpnI	GATC	3 cut(s)	195, 237, 441
DpnII	GATC	3 cut(s)	193, 235, 439
DraI	TTTAAA	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	2 cut(s)	30, 155
Eco57I	CTGAAG	1 cut(s)	171
Eco81I	CCTNAGG	1 cut(s)	50
Eco88I	CYCGRG	1 cut(s)	380
EcoO109I	RGGNCCY	2 cut(s)	30, 155
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	451, 505
FaiI	YATR	8 cut(s)	38, 216, 233, 372, 392, 449, 503, 508
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	2 cut(s)	447, 501
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	63
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	1 cut(s)	269
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	3 cut(s)	230, 346, 422
HapII	CCGG	2 cut(s)	59, 124
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	2 cut(s)	451, 505
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HinfI	GANTC	2 cut(s)	146, 362
HpaII	CCGG	2 cut(s)	59, 124
HphI	GGTGA	3 cut(s)	218, 230, 371
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	2 cut(s)	145, 151
Hpy188III	TCNNGA	4 cut(s)	82, 170, 197, 380
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	5 cut(s)	85, 146, 168, 349, 454
HpyCH4III	ACNGT	2 cut(s)	334, 481
HpyCH4V	TGCA	5 cut(s)	22, 287, 370, 451, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	493, 502
HpyF3I	CTNAG	2 cut(s)	50, 144
Hsp92II	CATG	2 cut(s)	451, 505
HspAI	GCGC	1 cut(s)	407
KflI	GGGWCCC	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	193, 235, 439
LpnPI	CCDG	8 cut(s)	72, 95, 120, 137, 183, 322, 450, 473
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	3 cut(s)	195, 237, 441
MboI	GATC	3 cut(s)	193, 235, 439
MboII	GAAGA	5 cut(s)	203, 257, 302, 422, 427
MflI	RGATCY	2 cut(s)	193, 439
MluCI	AATT	3 cut(s)	110, 138, 474
MlyI	GAGTC	2 cut(s)	155, 371
MnlI	CCTC	8 cut(s)	166, 169, 193, 196, 267, 345, 376, 387
Mph1103I	ATGCAT	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	75
MseI	TTAA	2 cut(s)	114, 297
MspI	CCGG	2 cut(s)	59, 124
MspR9I	CCNGG	1 cut(s)	124
Mva1269I	GAATGC	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	493, 502
NciI	CCSGG	1 cut(s)	124
NdeII	GATC	3 cut(s)	193, 235, 439
NlaIII	CATG	2 cut(s)	451, 505
NlaIV	GGNNCC	4 cut(s)	31, 32, 223, 441
NmuCI	GTSAC	1 cut(s)	386
NsbI	TGCGCA	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	458
PctI	GAATGC	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	2 cut(s)	154, 370
PpsI	GAGTC	2 cut(s)	154, 370
PpuMI	RGGWCCY	2 cut(s)	30, 155
Psp5II	RGGWCCY	2 cut(s)	30, 155
PspN4I	GGNNCC	4 cut(s)	31, 32, 223, 441
PspPI	GGNCC	2 cut(s)	30, 155
PspPPI	RGGWCCY	2 cut(s)	30, 155
PstI	CTGCAG	1 cut(s)	289
PsuI	RGATCY	2 cut(s)	193, 439
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
SaqAI	TTAA	2 cut(s)	114, 297
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	193, 235, 439
Sau96I	GGNCC	2 cut(s)	30, 155
SchI	GAGTC	2 cut(s)	155, 371
ScrFI	CCNGG	1 cut(s)	124
SetI	ASST	6 cut(s)	51, 109, 157, 243, 278, 492
SfaNI	GCATC	1 cut(s)	128
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	30, 155
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	3 cut(s)	110, 138, 474
SsiI	CCGC	3 cut(s)	95, 266, 269
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	334, 481
TaqI	TCGA	1 cut(s)	278
TasI	AATT	3 cut(s)	110, 138, 474
TauI	GCSGC	1 cut(s)	271
Tru1I	TTAA	2 cut(s)	114, 297
Tru9I	TTAA	2 cut(s)	114, 297
TscAI	CASTG	1 cut(s)	337
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	3 cut(s)	320, 389, 436
TspGWI	ACGGA	2 cut(s)	264, 355
TspRI	CASTG	1 cut(s)	337
VpaK11BI	GGWCC	2 cut(s)	30, 155
XapI	RAATTY	2 cut(s)	110, 138
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	63
Zsp2I	ATGCAT	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.