Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

40583330 .. 40584358

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG377400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGCAGAGGATTGCAACAGAAATGTGGAGGGTTAATGTAGTAGATAGTGAAAAAAGGAAGGAGGCCACATCAAAGGAACATGTTATTGTTGACGATTGCAATGAAGACAAGAAGGATATTGTTGGAAGGAACCAAGTTAAGGATGCTTCTTACCTTGCTGAGGTTGCCAAAATCTCAGGCAAGATGAACTTCTATGACCACATCACCTTGGGTAATTGCTCACCGCTGGAGGCCAAACAGAAGATCTTGGGAGAGGTGATCAAGCTTGGCCACAAGATCTTTGTTAGCATGGAGTTCGAGGAGGAGAGCGAACTGGAAAGACAGCTGCAGATGGTCAGGGGCGAGTGTGATGATGCAAAACTCAAAATTTCCAGCCTCACGAAGGAAGTGTCAACTCTCAAGAAGAAGCTGGAAAAACAAACTAAGGAGTTGGAGGATAGGGATGCGAACTTGGTCTTGGCGCAAGCGAGTTTGGCGAGTGCGGAAGAGGAGGTGCAGCGCTTGAAGAAGGAGATCGAGGATGTCGCTGCCCGGAAAGATCAGGAGAGAGCGGAGGCTTTAGAGAAGGAGCGTGAGGAGGCTCGCTCAAATCAATCTATGCGGAACTCTCTGTCCGGAGCGATTGATATCTTTGAGCGGAACCTGGCTGAGGAGAAGAATCAAACAGGACCCTTGAATGAGGAGCTTAGCAGGCTTTACAAACTTGCCTGTGATACCCTGTTCCAGTATTTCATGGATAAGGGTGTGATTGACAAGAAGGTTCTGCTGGCGCTGCAGGGGGAGGAGAAGAAGAAGAAGTATGATCAACTCAAGGCGGCCGCCAAAGATCGTGCTAGCAGTCAAGCGCCCTCCGGAGCTGATAGTGGAGAGGCGGATGTGTCCGAGGAGGAGGATGATTCCGGAACACAAACGACCAATACCACTACTTCTGTCACGACATTCACTTTCGATATCACCCCCAGCACCCAGCTTCCGGTCACTCCTAGCGTGACTCCTCAAACTGGCTATTCCTTGGATATTGACAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

342

Amino Acids

38.35

Weight (kDa)

4.93

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	551, 637
AccIII	TCCGGA	3 cut(s)	614, 851, 899
AciI	CCGC	8 cut(s)	224, 482, 551, 601, 637, 815, 819, 872
AcoI	YGGCCR	2 cut(s)	268, 816
AcsI	RAATTY	1 cut(s)	366
AfeI	AGCGCT	1 cut(s)	500
AfiI	CCNNNNNNNGG	6 cut(s)	139, 160, 382, 649, 973, 1001
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	505, 676
AjnI	CCWGG	1 cut(s)	642
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AloI	GAACNNNNNNTCC	2 cut(s)	596, 628
AluBI	AGCT	6 cut(s)	265, 325, 409, 685, 857, 970
AluI	AGCT	6 cut(s)	265, 325, 409, 685, 857, 970
Aor13HI	TCCGGA	3 cut(s)	614, 851, 899
Aor51HI	AGCGCT	1 cut(s)	500
AoxI	GGCC	4 cut(s)	63, 231, 268, 816
ApeKI	GCWGC	4 cut(s)	325, 496, 527, 772
ApoI	RAATTY	1 cut(s)	366
ArsI	GACNNNNNNTTYG	2 cut(s)	374, 406
AspLEI	GCGC	4 cut(s)	463, 501, 772, 847
AspS9I	GGNCC	1 cut(s)	668
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	4 cut(s)	196, 213, 268, 946
AsuNHI	GCTAGC	1 cut(s)	833
AvaII	GGWCC	1 cut(s)	668
BalI	TGGCCA	1 cut(s)	270
BbsI	GAAGAC	1 cut(s)	111
BbvCI	CCTCAGC	2 cut(s)	159, 648
BbvI	GCAGC	4 cut(s)	312, 508, 514, 759
BccI	CCATC	1 cut(s)	325
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	644
BclI	TGATCA	2 cut(s)	258, 802
BcnI	CCSGG	1 cut(s)	532
BfaI	CTAG	2 cut(s)	834, 984
BfmI	CTRYAG	2 cut(s)	326, 773
BfoI	RGCGCY	3 cut(s)	502, 773, 848
BglII	AGATCT	2 cut(s)	243, 276
BisI	GCNGC	6 cut(s)	326, 497, 528, 773, 816, 819
BlpI	GCTNAGC	1 cut(s)	686
BlsI	GCNGC	6 cut(s)	327, 498, 529, 774, 817, 820
Bme1390I	CCNGG	2 cut(s)	532, 644
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	3 cut(s)	131, 641, 670
BmrFI	CCNGG	2 cut(s)	532, 644
BmsI	GCATC	3 cut(s)	133, 343, 433
BmtI	GCTAGC	1 cut(s)	837
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	569, 601
BpmI	CTGGAG	1 cut(s)	248
Bpu10I	CCTNAGC	2 cut(s)	159, 648
Bpu1102I	GCTNAGC	1 cut(s)	686
BpuEI	CTTGAG	2 cut(s)	383, 794
BpuMI	CCSGG	1 cut(s)	532
BsaBI	GATNNNNATC	1 cut(s)	626
BsaJI	CCNNGG	3 cut(s)	207, 882, 1011
BsaWI	WCCGGW	4 cut(s)	614, 851, 899, 973
Bsc4I	CCNNNNNNNGG	6 cut(s)	139, 160, 382, 649, 973, 1001
Bse1I	ACTGG	3 cut(s)	318, 724, 1006
Bse3DI	GCAATG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	626
BseAI	TCCGGA	3 cut(s)	614, 851, 899
BseBI	CCWGG	1 cut(s)	644
BseDI	CCNNGG	3 cut(s)	207, 882, 1011
BseGI	GGATG	5 cut(s)	148, 448, 526, 880, 898
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	6 cut(s)	139, 160, 382, 649, 973, 1001
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	3 cut(s)	150, 189, 639
BseNI	ACTGG	3 cut(s)	318, 724, 1006
BseX3I	CGGCCG	1 cut(s)	816
BseXI	GCAGC	4 cut(s)	312, 508, 514, 759
BseYI	CCCAGC	2 cut(s)	959, 966
BsgI	GTGCAG	1 cut(s)	515
Bsh1285I	CGRYCG	1 cut(s)	819
BshFI	GGCC	4 cut(s)	65, 233, 270, 818
BsiEI	CGRYCG	1 cut(s)	819
BsiSI	CCGG	5 cut(s)	532, 615, 852, 900, 974
BslI	CCNNNNNNNGG	6 cut(s)	139, 160, 382, 649, 973, 1001
BsnI	GGCC	4 cut(s)	65, 233, 270, 818
Bsp13I	TCCGGA	3 cut(s)	614, 851, 899
Bsp143I	GATC	7 cut(s)	243, 258, 276, 513, 538, 802, 826
Bsp1720I	GCTNAGC	1 cut(s)	686
BspACI	CCGC	8 cut(s)	224, 482, 551, 601, 637, 815, 819, 872
BspANI	GGCC	4 cut(s)	65, 233, 270, 818
BspCNI	CTCAG	3 cut(s)	151, 188, 640
BspEI	TCCGGA	3 cut(s)	614, 851, 899
BspLI	GGNNCC	3 cut(s)	131, 641, 670
BspMAI	CTGCAG	2 cut(s)	330, 777
BspOI	GCTAGC	1 cut(s)	837
BsrBI	CCGCTC	2 cut(s)	551, 637
BsrDI	GCAATG	1 cut(s)	106
BsrI	ACTGG	3 cut(s)	318, 724, 1006
BssECI	CCNNGG	3 cut(s)	207, 882, 1011
BssMI	GATC	7 cut(s)	243, 258, 276, 513, 538, 802, 826
BssT1I	CCWWGG	2 cut(s)	207, 1011
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	1025
Bst6I	CTCTTC	1 cut(s)	480
BstC8I	GCNNGC	5 cut(s)	465, 583, 692, 768, 835
BstDEI	CTNAG	5 cut(s)	159, 175, 423, 648, 686
BstENI	CCTNNNNNAGG	3 cut(s)	158, 380, 647
BstF5I	GGATG	5 cut(s)	148, 448, 526, 880, 898
BstH2I	RGCGCY	3 cut(s)	502, 773, 848
BstHHI	GCGC	4 cut(s)	463, 501, 772, 847
BstKTI	GATC	7 cut(s)	246, 261, 279, 516, 541, 805, 829
BstMBI	GATC	7 cut(s)	243, 258, 276, 513, 538, 802, 826
BstMCI	CGRYCG	1 cut(s)	819
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 473, 691, 772
BstNI	CCWGG	1 cut(s)	644
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	530, 642
BstSFI	CTRYAG	2 cut(s)	326, 773
BstV1I	GCAGC	4 cut(s)	312, 508, 514, 759
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	243, 276
BstYI	RGATCY	2 cut(s)	243, 276
BstZI	CGGCCG	1 cut(s)	816
BsuRI	GGCC	4 cut(s)	65, 233, 270, 818
BtsCI	GGATG	5 cut(s)	148, 448, 526, 880, 898
Cac8I	GCNNGC	5 cut(s)	465, 583, 692, 768, 835
CciNI	GCGGCCGC	1 cut(s)	816
CfoI	GCGC	4 cut(s)	463, 501, 772, 847
Cfr13I	GGNCC	1 cut(s)	668
CviAII	CATG	3 cut(s)	80, 289, 733
DdeI	CTNAG	5 cut(s)	159, 175, 423, 648, 686
DpnI	GATC	7 cut(s)	245, 260, 278, 515, 540, 804, 828
DpnII	GATC	7 cut(s)	243, 258, 276, 513, 538, 802, 826
EaeI	YGGCCR	2 cut(s)	268, 816
EagI	CGGCCG	1 cut(s)	816
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
EciI	GGCGGA	1 cut(s)	887
EclXI	CGGCCG	1 cut(s)	816
Eco130I	CCWWGG	2 cut(s)	207, 1011
Eco32I	GATATC	2 cut(s)	628, 952
Eco47I	GGWCC	1 cut(s)	668
Eco47III	AGCGCT	1 cut(s)	500
Eco52I	CGGCCG	1 cut(s)	816
EcoNI	CCTNNNNNAGG	3 cut(s)	158, 380, 647
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRII	CCWGG	1 cut(s)	642
EcoRV	GATATC	2 cut(s)	628, 952
EcoT14I	CCWWGG	2 cut(s)	207, 1011
ErhI	CCWWGG	2 cut(s)	207, 1011
FaeI	CATG	3 cut(s)	83, 292, 736
FaiI	YATR	6 cut(s)	81, 195, 290, 599, 734, 801
FalI	AAGNNNNNCTT	2 cut(s)	173, 205
FatI	CATG	3 cut(s)	79, 288, 732
FbaI	TGATCA	2 cut(s)	258, 802
Fnu4HI	GCNGC	6 cut(s)	326, 497, 528, 773, 816, 819
FokI	GGATG	5 cut(s)	155, 455, 533, 887, 905
Fsp4HI	GCNGC	6 cut(s)	326, 497, 528, 773, 816, 819
FspBI	CTAG	2 cut(s)	834, 984
GlaI	GCGC	4 cut(s)	462, 500, 771, 846
GluI	GCNGC	6 cut(s)	326, 497, 528, 773, 816, 819
GsaI	CCCAGC	2 cut(s)	963, 970
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	3 cut(s)	502, 773, 848
HaeIII	GGCC	4 cut(s)	65, 233, 270, 818
HapII	CCGG	5 cut(s)	532, 615, 852, 900, 974
HhaI	GCGC	4 cut(s)	463, 501, 772, 847
Hin1II	CATG	3 cut(s)	83, 292, 736
Hin6I	GCGC	4 cut(s)	461, 499, 770, 845
HinP1I	GCGC	4 cut(s)	461, 499, 770, 845
HincII	GTYRAC	2 cut(s)	91, 393
HindII	GTYRAC	2 cut(s)	91, 393
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	3 cut(s)	658, 896, 991
HpaII	CCGG	5 cut(s)	532, 615, 852, 900, 974
HphI	GGTGA	4 cut(s)	196, 213, 268, 946
Hpy166II	GTNNAC	2 cut(s)	91, 393
Hpy188I	TCNGA	1 cut(s)	883
Hpy188III	TCNNGA	7 cut(s)	379, 400, 542, 615, 852, 900, 934
Hpy8I	GTNNAC	2 cut(s)	91, 393
HpyAV	CCTTC	7 cut(s)	52, 106, 120, 376, 502, 559, 751
HpyCH4III	ACNGT	1 cut(s)	1025
HpyCH4V	TGCA	7 cut(s)	4, 14, 99, 328, 356, 496, 775
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 473, 691, 772
HpyF3I	CTNAG	5 cut(s)	159, 175, 423, 648, 686
Hsp92II	CATG	3 cut(s)	83, 292, 736
HspAI	GCGC	4 cut(s)	461, 499, 770, 845
Kpn2I	TCCGGA	3 cut(s)	614, 851, 899
Ksp22I	TGATCA	2 cut(s)	258, 802
Kzo9I	GATC	7 cut(s)	243, 258, 276, 513, 538, 802, 826
LmnI	GCTCC	4 cut(s)	568, 617, 682, 854
Lsp1109I	GCAGC	4 cut(s)	312, 508, 514, 759
LweI	GCATC	3 cut(s)	133, 343, 433
MaeI	CTAG	2 cut(s)	834, 984
MaeIII	GTNAC	3 cut(s)	931, 976, 988
MalI	GATC	7 cut(s)	245, 260, 278, 515, 540, 804, 828
MbiI	CCGCTC	2 cut(s)	551, 637
MboI	GATC	7 cut(s)	243, 258, 276, 513, 538, 802, 826
MboII	GAAGA	9 cut(s)	116, 253, 415, 497, 517, 667, 799, 802, 805
MflI	RGATCY	2 cut(s)	243, 276
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	2 cut(s)	214, 366
MluNI	TGGCCA	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	985
MmeI	TCCRAC	2 cut(s)	103, 411
Mox20I	TGGCCA	1 cut(s)	270
MroI	TCCGGA	3 cut(s)	614, 851, 899
MscI	TGGCCA	1 cut(s)	270
MseI	TTAA	2 cut(s)	33, 138
Msp20I	TGGCCA	1 cut(s)	270
MspA1I	CMGCKG	2 cut(s)	226, 325
MspI	CCGG	5 cut(s)	532, 615, 852, 900, 974
MspR9I	CCNGG	2 cut(s)	532, 644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	4 cut(s)	164, 473, 691, 772
NciI	CCSGG	1 cut(s)	532
NdeII	GATC	7 cut(s)	243, 258, 276, 513, 538, 802, 826
NheI	GCTAGC	1 cut(s)	833
NlaIII	CATG	3 cut(s)	83, 292, 736
NlaIV	GGNNCC	3 cut(s)	131, 641, 670
NmuCI	GTSAC	3 cut(s)	931, 976, 988
NotI	GCGGCCGC	1 cut(s)	816
NspI	RCATGY	1 cut(s)	83
PciI	ACATGT	1 cut(s)	79
PfeI	GAWTC	2 cut(s)	658, 896
PkrI	GCNGC	6 cut(s)	327, 498, 529, 774, 817, 820
PleI	GAGTC	1 cut(s)	985
PpsI	GAGTC	1 cut(s)	985
PpuMI	RGGWCCY	1 cut(s)	668
PscI	ACATGT	1 cut(s)	79
Psp5II	RGGWCCY	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	642
PspFI	CCCAGC	2 cut(s)	959, 966
PspGI	CCWGG	1 cut(s)	642
PspN4I	GGNNCC	3 cut(s)	131, 641, 670
PspPI	GGNCC	1 cut(s)	668
PspPPI	RGGWCCY	1 cut(s)	668
PstI	CTGCAG	2 cut(s)	330, 777
PsuI	RGATCY	2 cut(s)	243, 276
PvuII	CAGCTG	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	33, 138
SatI	GCNGC	6 cut(s)	326, 497, 528, 773, 816, 819
Sau3AI	GATC	7 cut(s)	243, 258, 276, 513, 538, 802, 826
Sau96I	GGNCC	1 cut(s)	668
SchI	GAGTC	1 cut(s)	985
ScrFI	CCNGG	2 cut(s)	532, 644
SfaNI	GCATC	3 cut(s)	133, 343, 433
SfcI	CTRYAG	2 cut(s)	326, 773
SinI	GGWCC	1 cut(s)	668
SmlI	CTYRAG	2 cut(s)	398, 809
SmoI	CTYRAG	2 cut(s)	398, 809
Sse9I	AATT	2 cut(s)	214, 366
SsiI	CCGC	8 cut(s)	224, 482, 551, 601, 637, 815, 819, 872
SspMI	CTAG	2 cut(s)	834, 984
StyD4I	CCNGG	2 cut(s)	530, 642
StyI	CCWWGG	2 cut(s)	207, 1011
TaaI	ACNGT	1 cut(s)	1025
TaqI	TCGA	3 cut(s)	297, 516, 948
TasI	AATT	2 cut(s)	214, 366
TauI	GCSGC	2 cut(s)	818, 821
TfiI	GAWTC	2 cut(s)	658, 896
Tru1I	TTAA	2 cut(s)	33, 138
Tru9I	TTAA	2 cut(s)	33, 138
TseFI	GTSAC	3 cut(s)	931, 976, 988
TseI	GCWGC	4 cut(s)	325, 496, 527, 772
Tsp45I	GTSAC	3 cut(s)	931, 976, 988
TspDTI	ATGAA	3 cut(s)	117, 200, 721
VpaK11BI	GGWCC	1 cut(s)	668
XagI	CCTNNNNNAGG	3 cut(s)	158, 380, 647
XapI	RAATTY	1 cut(s)	366
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	2 cut(s)	834, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.