Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

44801776 .. 44802588

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGCTCCGGCAAATGACCAAATTTTTTGGTCCCGTTATTGGGGTGAATGTGACGAGGCGAGGCTCAAGATTGCTGGCTTGAACAAAGAAGTCACAACCTTGAAGAAGAAACTGGAGAAACAAACCAAGGATAACAAGGCTTTGGAAGCCCATGATCGGAAGCGGGAGATAGAGCAGTTGACCAAGGAGCTGGAGGATAGGGATGTGAACCTTAACTTGGCTAAGCCAAGCTTGCCAGATGTGGATGAGGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

85

Amino Acids

9.91

Weight (kDa)

5.21

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	21
AfiI	CCNNNNNNNGG	4 cut(s)	39, 40, 156, 217
AgsI	TTSAA	2 cut(s)	82, 103
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AluBI	AGCT	2 cut(s)	190, 231
AluI	AGCT	2 cut(s)	190, 231
ApoI	RAATTY	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	30
BlpI	GCTNAGC	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	6, 32
BpmI	CTGGAG	2 cut(s)	134, 212
Bpu1102I	GCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	126, 183
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 40, 156, 217
Bse1I	ACTGG	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	126, 183
BseGI	GGATG	2 cut(s)	208, 250
BseLI	CCNNNNNNNGG	4 cut(s)	39, 40, 156, 217
BseNI	ACTGG	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	4 cut(s)	39, 40, 156, 217
BsmFI	GGGAC	1 cut(s)	16
Bsp143I	GATC	1 cut(s)	154
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	6, 32
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	126, 183
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	2 cut(s)	126, 183
BstC8I	GCNNGC	2 cut(s)	76, 233
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	2 cut(s)	208, 250
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 232
BstXI	CCANNNNNNTGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	208, 250
Cac8I	GCNNGC	2 cut(s)	76, 233
Cfr13I	GGNCC	1 cut(s)	30
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	9 cut(s)	5, 64, 78, 140, 149, 190, 221, 226, 231
CviKI_1	RGCY	9 cut(s)	5, 64, 78, 140, 149, 190, 221, 226, 231
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	126, 183
Eco47I	GGWCC	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	126, 183
ErhI	CCWWGG	2 cut(s)	126, 183
FaeI	CATG	1 cut(s)	155
FaiI	YATR	1 cut(s)	153
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	1 cut(s)	151
FauI	CCCGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	215
GsuI	CTGGAG	2 cut(s)	134, 212
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HindIII	AAGCTT	1 cut(s)	229
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	180, 208
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	1 cut(s)	67
Hpy8I	GTNNAC	2 cut(s)	180, 208
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 232
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	10, 187
LpnPI	CCDG	5 cut(s)	21, 60, 98, 176, 249
MaeIII	GTNAC	2 cut(s)	50, 91
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	115, 118
MluCI	AATT	1 cut(s)	21
MnlI	CCTC	5 cut(s)	49, 54, 187, 241, 244
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	146, 232
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	6, 32
NmuCI	GTSAC	2 cut(s)	50, 91
PspN4I	GGNNCC	2 cut(s)	6, 32
PspPI	GGNCC	1 cut(s)	30
SaqAI	TTAA	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	30
SetI	ASST	5 cut(s)	101, 192, 213, 233, 255
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	163
StyI	CCWWGG	2 cut(s)	126, 183
TasI	AATT	1 cut(s)	21
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	50, 91
Tsp45I	GTSAC	2 cut(s)	50, 91
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.