Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007681.1

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

21278 .. 22292

Gene Structure 1015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007681.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atgctccaaagtgtcttgtgtgttttttggccaaagaaaggtgttcttttggtggagctttgggttcctccaatttgtgcagattggagtgagccacacaacttattgttgggctgttgtatacaggttccgccgaaacccaagcggaccttgaggaagatggcgaaagagcacgaggctaagcagaagattttgggagaggtgattaagttgaatcacaagttttttgtgaataaagaatttgaagaggagagcaaactcaagaggcaacttttggtagccaagtgtgaatgcgatgaggaaaagcacaaggttgccaattcaaccaaagacgcctcaaacttgaataagaagctagagaagcagaccaaggagtgcaaagcactagaagctcaaggacttgaccagaagcgggagataaagcatttgaccaaggagttggaggatagggacgtagcgagacagatggggcctttgcatgagggactcagtaggatgtacaagctagcctccgacactcagttcaaatatctccgggatcaaaagatcattgatccgaaagccttggctgaagcacaagaggtcgaaaggaagagaaagttggatcagatcaaggctgctgcgaaggagcgtgctgatggccaagcacccgagactgaggttgatgggcaagaggggagtgtgtcagagcaggaagatgattcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.97

Weight (kDa)

8.07

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	121
AciI	CCGC	3 cut(s)	131, 145, 412
AclWI	GGATC	3 cut(s)	546, 548, 612
AcoI	YGGCCR	2 cut(s)	29, 640
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	591
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	38, 412
AgsI	TTSAA	5 cut(s)	214, 245, 324, 346, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AluBI	AGCT	4 cut(s)	58, 355, 392, 505
AluI	AGCT	4 cut(s)	58, 355, 392, 505
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	2 cut(s)	454, 647
AlwI	GGATC	3 cut(s)	546, 548, 612
Ama87I	CYCGRG	1 cut(s)	650
AoxI	GGCC	3 cut(s)	29, 470, 640
ApeKI	GCWGC	2 cut(s)	617, 620
ApoI	RAATTY	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	147, 470
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	214
AsuNHI	GCTAGC	1 cut(s)	505
AvaI	CYCGRG	1 cut(s)	650
AvaII	GGWCC	1 cut(s)	147
BalI	TGGCCA	2 cut(s)	31, 642
BauI	CACGAG	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	604, 607
BccI	CCATC	4 cut(s)	154, 460, 632, 659
BcnI	CCSGG	1 cut(s)	536
BcoDI	GTCTC	2 cut(s)	454, 647
BfaI	CTAG	3 cut(s)	356, 386, 506
BisI	GCNGC	2 cut(s)	618, 621
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	2 cut(s)	619, 622
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	650
BmgT120I	GGNCC	2 cut(s)	147, 470
BmiI	GGNNCC	3 cut(s)	66, 129, 471
BmrFI	CCNGG	1 cut(s)	536
BmtI	GCTAGC	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	3 cut(s)	172, 245, 378
BpuMI	CCSGG	1 cut(s)	536
BsaHI	GRCGYC	1 cut(s)	333
BsaJI	CCNNGG	3 cut(s)	369, 432, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 412
BseDI	CCNNGG	3 cut(s)	369, 432, 564
BseGI	GGATG	1 cut(s)	501
BseLI	CCNNNNNNNGG	2 cut(s)	38, 412
BseMII	CTCAG	3 cut(s)	502, 533, 648
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	604, 607
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	31, 472, 642
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	650
BsiSI	CCGG	1 cut(s)	535
BslFI	GGGAC	2 cut(s)	464, 498
BslI	CCNNNNNNNGG	2 cut(s)	38, 412
BsmAI	GTCTC	2 cut(s)	454, 647
BsmFI	GGGAC	2 cut(s)	464, 498
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	31, 472, 642
BsoBI	CYCGRG	1 cut(s)	650
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	5 cut(s)	538, 546, 553, 604, 609
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	3 cut(s)	131, 145, 412
BspANI	GGCC	3 cut(s)	31, 472, 642
BspCNI	CTCAG	3 cut(s)	501, 532, 649
BspLI	GGNNCC	3 cut(s)	66, 129, 471
BspOI	GCTAGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	546, 548, 612
BsrGI	TGTACA	1 cut(s)	498
BssECI	CCNNGG	3 cut(s)	369, 432, 564
BssMI	GATC	5 cut(s)	538, 546, 553, 604, 609
BssNAI	GTATAC	1 cut(s)	122
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	1 cut(s)	173
BssT1I	CCWWGG	3 cut(s)	369, 432, 564
Bst1107I	GTATAC	1 cut(s)	122
Bst2BI	CACGAG	1 cut(s)	173
Bst6I	CTCTTC	2 cut(s)	240, 587
BstACI	GRCGYC	1 cut(s)	333
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	507, 633
BstDEI	CTNAG	4 cut(s)	180, 488, 519, 657
BstF5I	GGATG	1 cut(s)	501
BstKTI	GATC	5 cut(s)	541, 549, 556, 607, 612
BstMAI	GTCTC	2 cut(s)	454, 647
BstMBI	GATC	5 cut(s)	538, 546, 553, 604, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	361, 389
BstSCI	CCNGG	1 cut(s)	534
BstV1I	GCAGC	2 cut(s)	604, 607
BstXI	CCANNNNNNTGG	1 cut(s)	439
BstZ17I	GTATAC	1 cut(s)	122
BsuRI	GGCC	3 cut(s)	31, 472, 642
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	501
Cac8I	GCNNGC	2 cut(s)	507, 633
Cfr13I	GGNCC	2 cut(s)	147, 470
CseI	GACGC	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	1 cut(s)	479
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	180, 488, 519, 657
DpnI	GATC	5 cut(s)	540, 548, 555, 606, 611
DpnII	GATC	5 cut(s)	538, 546, 553, 604, 609
EaeI	YGGCCR	2 cut(s)	29, 640
Eam1104I	CTCTTC	2 cut(s)	240, 587
EarI	CTCTTC	2 cut(s)	240, 587
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	3 cut(s)	369, 432, 564
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	650
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT14I	CCWWGG	3 cut(s)	369, 432, 564
ErhI	CCWWGG	3 cut(s)	369, 432, 564
FaeI	CATG	1 cut(s)	482
FaiI	YATR	2 cut(s)	122, 480
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 134, 166
FaqI	GGGAC	2 cut(s)	464, 498
FatI	CATG	1 cut(s)	478
FauI	CCCGC	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	2 cut(s)	618, 621
FokI	GGATG	1 cut(s)	508
Fsp4HI	GCNGC	2 cut(s)	618, 621
FspBI	CTAG	3 cut(s)	356, 386, 506
GluI	GCNGC	2 cut(s)	618, 621
HaeIII	GGCC	3 cut(s)	31, 472, 642
HapII	CCGG	1 cut(s)	535
HgaI	GACGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	1 cut(s)	482
HinfI	GANTC	3 cut(s)	214, 486, 701
HpaII	CCGG	1 cut(s)	535
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	4 cut(s)	514, 558, 609, 688
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	619
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	3 cut(s)	80, 378, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	361, 389
HpyF3I	CTNAG	4 cut(s)	180, 488, 519, 657
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	1 cut(s)	482
Kzo9I	GATC	5 cut(s)	538, 546, 553, 604, 609
LmnI	GCTCC	3 cut(s)	9, 55, 628
LpnPI	CCDG	4 cut(s)	110, 419, 548, 677
Lsp1109I	GCAGC	2 cut(s)	604, 607
MaeI	CTAG	3 cut(s)	356, 386, 506
MaeII	ACGT	1 cut(s)	453
MalI	GATC	5 cut(s)	540, 548, 555, 606, 611
MboI	GATC	5 cut(s)	538, 546, 553, 604, 609
MboII	GAAGA	5 cut(s)	169, 199, 257, 604, 707
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	2 cut(s)	31, 642
MluCI	AATT	3 cut(s)	72, 239, 319
MluNI	TGGCCA	2 cut(s)	31, 642
MlyI	GAGTC	1 cut(s)	480
MmeI	TCCRAC	3 cut(s)	420, 537, 582
Mox20I	TGGCCA	2 cut(s)	31, 642
MscI	TGGCCA	2 cut(s)	31, 642
MseI	TTAA	1 cut(s)	207
Msp20I	TGGCCA	2 cut(s)	31, 642
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	296
MwoI	GCNNNNNNNGC	2 cut(s)	361, 389
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	5 cut(s)	538, 546, 553, 604, 609
NheI	GCTAGC	1 cut(s)	505
NlaIII	CATG	1 cut(s)	482
NlaIV	GGNNCC	3 cut(s)	66, 129, 471
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	214, 701
PfoI	TCCNGGA	1 cut(s)	534
PkrI	GCNGC	2 cut(s)	619, 622
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	66, 129, 471
PspPI	GGNCC	2 cut(s)	147, 470
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	618, 621
Sau3AI	GATC	5 cut(s)	538, 546, 553, 604, 609
Sau96I	GGNCC	2 cut(s)	147, 470
SchI	GAGTC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	174
SinI	GGWCC	1 cut(s)	147
SmlI	CTYRAG	3 cut(s)	151, 260, 393
SmoI	CTYRAG	3 cut(s)	151, 260, 393
Sse9I	AATT	3 cut(s)	72, 239, 319
SsiI	CCGC	3 cut(s)	131, 145, 412
SspMI	CTAG	3 cut(s)	356, 386, 506
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	3 cut(s)	369, 432, 564
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	585
TasI	AATT	3 cut(s)	72, 239, 319
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	2 cut(s)	214, 701
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	2 cut(s)	617, 620
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	121
XspI	CTAG	3 cut(s)	356, 386, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.