FvH4_1g29422

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
22437230 .. 22439686
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29422.t1

Sequence Viewer

Length: 1407 bp
ATGGCATCTGATTCGCCCAACCTTGAAGGTTATTTGGATAGAGCCGATGCCCAAGATGCTATTAGGGATCGTCATCGCACGGAACTGAGGTTGTTCGATGTCCTCGGATTTGGCTCTTCCTGGCGCTCAGGTGCCTTTGTTGCAGTATCCGGTTGGGAAAAAGATGTGAATTTTTCTTCTAAATACCGCATAGGTCTTACAGTATCTCGTACCTTCCGCCCTGCAAAAAAATATGATGGATTTATGTTCCGCATCGATACACCAGGTCCATATGTTTCAGACTTCTGGAGAATGAGCTGTTTTGTTGTGACCGTGCGGATACCGTCGTATTATTCTGATCCGGAGTTGGATTGTGTCGCACACGACATGCCTCAGAGATCTTCCCGTTTTGATGAACGCAAGAAAGAAGTGAAGAAAGTCAAAATTGGGCAGAAAATAACTGAATCAATTCTGGGGAAAGAACAGCGTGATCGACGATTCGCTCGCGAAGGTTCCCAGTCGAAGTCTCGCTCTACGGATTCTGCCTCATCGTTATTAAGCAATCTTGGGTCCAAAGATTCTCCTATCATTGTGGACGAGTACGGGTCGAATCGTGGTCAGTCTTCCGCTTGTTACCGCTGCAACAAAGGATTCTCGAAGTCCTCTGGAAGAAGCAAATTTCCTGTTGCTATTCTGCTGCGGAATGAAGTTCGCTTGAAATCGGCTATAGAGAAGAAGAAGAAGAAGAAGAAGAAGCCTGTTACGAAGAAGCGAAAATATGCTAGTGATGTTCAACTCAGAAATTTATTAAAAGCCTTGGGTTGTTCTGTCCTAGTGGAAGCTCAAAAGGTTGTTAATGATGCGAATGATTGTTCGGCTTCCGCTCGTGAGAATGAGCATTCTCTTGAGGATCGGCTACAGCGAAGTTATACCCCGTCATTTGGTCTTCTTGCCCCTGCGGAAATGCCTCTTCCGGAGGGTCTTTCCGATGCAAATCTTGAATTACATAAAAGTTGTACCGTTGTGATTTCTGAAACCGTGCAACTTTTGAAAGGTCTGTATAACTGTGAAGCGTTCCAAGATCTCCCTATCTTAGCGCAATTGCGAGAGACTGAAAAGGAATTGGCTCGTGTGAAGAGGATTATCAAGACGGTGGAAAACGAGAAAAGTAAGATGGAATCCTTTGTCAATTCCTCCTTTCGCCGGGAGGTTGCGTTGGAGAAGAAATGCCGGGATCAACAAGAGTTGATTGATTCAAAAGTTGAGCGAATGGCCGAGCGAGCTCCATATCGCCTCTTTTTGGAGCAAGGATTACTGAGAGTAGATGACCTTAAGAGAAGGCAAACTTTAGACTCATGGTATGCAGTGTCAAGTACAAAAGAGTCTGATGTCGCCACGTCCTCTAGTGACGATGATAGTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

469

Amino Acids

53.08

Weight (kDa)

9.33

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 863
AccII CGCG 1 cut(s) 486
AccIII TCCGGA 2 cut(s) 340, 952
AciI CCGC 9 cut(s) 187, 217, 250, 316, 606, 616, 679, 861, 938
AclWI GGATC 4 cut(s) 75, 332, 897, 1221
AcoI YGGCCR 1 cut(s) 1251
AcsI RAATTY 3 cut(s) 169, 656, 781
AfaI GTAC 4 cut(s) 211, 581, 997, 1354
AfiI CCNNNNNNNGG 3 cut(s) 920, 1182, 1279
AflII CTTAAG 1 cut(s) 1310
AgsI TTSAA 7 cut(s) 26, 697, 773, 980, 1030, 1236, 1401
AjiI CACGTC 1 cut(s) 1377
AjnI CCWGG 2 cut(s) 119, 262
AluBI AGCT 3 cut(s) 297, 821, 1262
AluI AGCT 3 cut(s) 297, 821, 1262
Alw21I GWGCWC 1 cut(s) 1264
Alw26I GTCTC 2 cut(s) 510, 1082
AlwI GGATC 4 cut(s) 75, 332, 897, 1221
Aor13HI TCCGGA 2 cut(s) 340, 952
AoxI GGCC 1 cut(s) 1251
ApeKI GCWGC 2 cut(s) 618, 676
ApoI RAATTY 3 cut(s) 169, 656, 781
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 2 cut(s) 126, 1078
AspS9I GGNCC 2 cut(s) 266, 549
AsuC2I CCSGG 2 cut(s) 1184, 1211
AvaII GGWCC 2 cut(s) 266, 549
BaeI ACNNNNGTAYC 2 cut(s) 311, 344
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 1264
BauI CACGAG 2 cut(s) 864, 1107
BbsI GAAGAC 2 cut(s) 594, 917
Bbv12I GWGCWC 1 cut(s) 1264
BbvI GCAGC 2 cut(s) 605, 663
BccI CCATC 2 cut(s) 230, 1147
BcgI CGANNNNNNTGC 1 cut(s) 28
BciT130I CCWGG 2 cut(s) 121, 264
BciVI GTATCC 2 cut(s) 157, 312
BcnI CCSGG 2 cut(s) 1184, 1211
BcoDI GTCTC 2 cut(s) 510, 1082
BfaI CTAG 3 cut(s) 762, 812, 1383
BfmI CTRYAG 2 cut(s) 705, 896
BfoI RGCGCY 1 cut(s) 127
BfrI CTTAAG 1 cut(s) 1310
BfuI GTATCC 2 cut(s) 157, 312
BglII AGATCT 2 cut(s) 377, 1060
BisI GCNGC 2 cut(s) 619, 677
BlsI GCNGC 2 cut(s) 620, 678
Bme1390I CCNGG 4 cut(s) 121, 264, 1184, 1211
Bme18I GGWCC 2 cut(s) 266, 549
BmgBI CACGTC 1 cut(s) 1377
BmgT120I GGNCC 2 cut(s) 266, 549
BmiI GGNNCC 3 cut(s) 133, 493, 550
BmrFI CCNGG 4 cut(s) 121, 264, 1184, 1211
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 6 cut(s) 14, 37, 46, 261, 829, 958
BmuI ACTGGG 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 594, 917
BpmI CTGGAG 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 905
BpuMI CCSGG 2 cut(s) 1184, 1211
Bsa29I ATCGAT 1 cut(s) 255
BsaBI GATNNNNATC 2 cut(s) 72, 972
BsaJI CCNNGG 2 cut(s) 103, 795
BsaWI WCCGGW 3 cut(s) 149, 340, 952
BsaXI ACNNNNNCTCC 2 cut(s) 1178, 1208
Bsc4I CCNNNNNNNGG 3 cut(s) 920, 1182, 1279
Bse1I ACTGG 1 cut(s) 496
Bse8I GATNNNNATC 2 cut(s) 72, 972
BseAI TCCGGA 2 cut(s) 340, 952
BseBI CCWGG 2 cut(s) 121, 264
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 103, 795
BseJI GATNNNNATC 2 cut(s) 72, 972
BseLI CCNNNNNNNGG 3 cut(s) 920, 1182, 1279
BseMII CTCAG 5 cut(s) 77, 141, 386, 790, 1286
BseNI ACTGG 1 cut(s) 496
BseXI GCAGC 2 cut(s) 605, 663
Bsh1236I CGCG 1 cut(s) 486
BshFI GGCC 1 cut(s) 1253
BshNI GGYRCC 1 cut(s) 131
BshVI ATCGAT 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 1264
BsiSI CCGG 5 cut(s) 150, 341, 953, 1183, 1210
BslI CCNNNNNNNGG 3 cut(s) 920, 1182, 1279
BsmAI GTCTC 2 cut(s) 510, 1082
BsmI GAATGC 1 cut(s) 877
BsnI GGCC 1 cut(s) 1253
Bsp1286I GDGCHC 1 cut(s) 1264
Bsp13I TCCGGA 2 cut(s) 340, 952
Bsp143I GATC 7 cut(s) 67, 337, 377, 469, 889, 1060, 1213
Bsp68I TCGCGA 1 cut(s) 486
BspACI CCGC 9 cut(s) 187, 217, 250, 316, 606, 616, 679, 861, 938
BspANI GGCC 1 cut(s) 1253
BspCNI CTCAG 5 cut(s) 78, 140, 385, 789, 1287
BspDI ATCGAT 1 cut(s) 255
BspEI TCCGGA 2 cut(s) 340, 952
BspFNI CGCG 1 cut(s) 486
BspLI GGNNCC 3 cut(s) 133, 493, 550
BspPI GGATC 4 cut(s) 75, 332, 897, 1221
BspQI GCTCTTC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 131
BspTI CTTAAG 1 cut(s) 1310
BsrBI CCGCTC 1 cut(s) 863
BsrI ACTGG 1 cut(s) 496
BssECI CCNNGG 2 cut(s) 103, 795
BssMI GATC 7 cut(s) 67, 337, 377, 469, 889, 1060, 1213
BssSI CACGAG 2 cut(s) 864, 1107
BssT1I CCWWGG 1 cut(s) 795
Bst2BI CACGAG 2 cut(s) 864, 1107
Bst2UI CCWGG 2 cut(s) 121, 264
Bst4CI ACNGT 7 cut(s) 202, 313, 324, 1000, 1018, 1046, 1132
Bst6I CTCTTC 3 cut(s) 121, 954, 1109
BstAFI CTTAAG 1 cut(s) 1310
BstC8I GCNNGC 2 cut(s) 484, 1260
BstDEI CTNAG 6 cut(s) 86, 127, 372, 776, 1072, 1295
BstFNI CGCG 1 cut(s) 486
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 2 cut(s) 126, 1078
BstKTI GATC 7 cut(s) 70, 340, 380, 472, 892, 1063, 1216
BstMAI GTCTC 2 cut(s) 510, 1082
BstMBI GATC 7 cut(s) 67, 337, 377, 469, 889, 1060, 1213
BstMWI GCNNNNNNNGC 3 cut(s) 56, 140, 1259
BstNI CCWGG 2 cut(s) 121, 264
BstNSI RCATGY 1 cut(s) 370
BstSCI CCNGG 4 cut(s) 119, 262, 1182, 1209
BstSFI CTRYAG 2 cut(s) 705, 896
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 2 cut(s) 605, 663
BstV2I GAAGAC 2 cut(s) 594, 917
BstX2I RGATCY 2 cut(s) 377, 1060
BstYI RGATCY 2 cut(s) 377, 1060
Bsu15I ATCGAT 1 cut(s) 255
BsuI GTATCC 2 cut(s) 157, 312
BsuRI GGCC 1 cut(s) 1253
BsuTUI ATCGAT 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 59
BtrI CACGTC 1 cut(s) 1377
BtsI GCAGTG 1 cut(s) 1350
BtsIMutI CAGTG 1 cut(s) 1350
BtuMI TCGCGA 1 cut(s) 486
Cac8I GCNNGC 2 cut(s) 484, 1260
CfoI GCGC 2 cut(s) 126, 1078
Cfr13I GGNCC 2 cut(s) 266, 549
ClaI ATCGAT 1 cut(s) 255
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 4 cut(s) 210, 580, 996, 1353
CviAII CATG 2 cut(s) 367, 1335
CviQI GTAC 4 cut(s) 210, 580, 996, 1353
DdeI CTNAG 6 cut(s) 86, 127, 372, 776, 1072, 1295
DpnI GATC 7 cut(s) 69, 339, 379, 471, 891, 1062, 1215
DpnII GATC 7 cut(s) 67, 337, 377, 469, 889, 1060, 1213
EaeI YGGCCR 1 cut(s) 1251
Eam1104I CTCTTC 3 cut(s) 121, 954, 1109
EarI CTCTTC 3 cut(s) 121, 954, 1109
EciI GGCGGA 1 cut(s) 206
Ecl136II GAGCTC 1 cut(s) 1262
Eco130I CCWWGG 1 cut(s) 795
Eco24I GRGCYC 1 cut(s) 1264
Eco47I GGWCC 2 cut(s) 266, 549
Eco53kI GAGCTC 1 cut(s) 1262
EcoICRI GAGCTC 1 cut(s) 1262
EcoRII CCWGG 2 cut(s) 119, 262
EcoT14I CCWWGG 1 cut(s) 795
EcoT38I GRGCYC 1 cut(s) 1264
ErhI CCWWGG 1 cut(s) 795
FaeI CATG 2 cut(s) 370, 1338
FalI AAGNNNNNCTT 2 cut(s) 1309, 1341
FatI CATG 2 cut(s) 366, 1334
FauNDI CATATG 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 619, 677
FriOI GRGCYC 1 cut(s) 1264
Fsp4HI GCNGC 2 cut(s) 619, 677
FspBI CTAG 3 cut(s) 762, 812, 1383
GlaI GCGC 2 cut(s) 125, 1077
GluI GCNGC 2 cut(s) 619, 677
GsuI CTGGAG 1 cut(s) 307
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 1 cut(s) 1253
HapII CCGG 5 cut(s) 150, 341, 953, 1183, 1210
HhaI GCGC 2 cut(s) 126, 1078
Hin1II CATG 2 cut(s) 370, 1338
Hin6I GCGC 2 cut(s) 124, 1076
HinP1I GCGC 2 cut(s) 124, 1076
HpaII CCGG 5 cut(s) 150, 341, 953, 1183, 1210
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 9 cut(s) 10, 107, 280, 337, 375, 779, 967, 1012, 1366
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 2 cut(s) 328, 477
HpyAV CCTTC 4 cut(s) 20, 223, 482, 1311
HpyCH4III ACNGT 7 cut(s) 202, 313, 324, 1000, 1018, 1046, 1132
HpyCH4IV ACGT 1 cut(s) 1376
HpyCH4V TGCA 6 cut(s) 143, 224, 621, 971, 1021, 1343
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 140, 1259
HpyF3I CTNAG 6 cut(s) 86, 127, 372, 776, 1072, 1295
HpySE526I ACGT 1 cut(s) 1376
Hsp92II CATG 2 cut(s) 370, 1338
HspAI GCGC 2 cut(s) 124, 1076
Kpn2I TCCGGA 2 cut(s) 340, 952
Kzo9I GATC 7 cut(s) 67, 337, 377, 469, 889, 1060, 1213
LguI GCTCTTC 1 cut(s) 121
LmnI GCTCC 2 cut(s) 1267, 1282
Lsp1109I GCAGC 2 cut(s) 605, 663
LweI GCATC 6 cut(s) 14, 37, 46, 261, 829, 958
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 3 cut(s) 762, 812, 1383
MaeII ACGT 1 cut(s) 1376
MaeIII GTNAC 4 cut(s) 307, 611, 739, 1385
MalI GATC 7 cut(s) 69, 339, 379, 471, 891, 1062, 1215
MbiI CCGCTC 1 cut(s) 863
MboI GATC 7 cut(s) 67, 337, 377, 469, 889, 1060, 1213
MfeI CAATTG 1 cut(s) 1079
MflI RGATCY 2 cut(s) 377, 1060
MhlI GDGCHC 1 cut(s) 1264
MluCI AATT 9 cut(s) 169, 423, 447, 656, 781, 980, 1079, 1100, 1168
MlyI GAGTC 2 cut(s) 1325, 1370
MmeI TCCRAC 2 cut(s) 327, 1176
MroI TCCGGA 2 cut(s) 340, 952
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 4 cut(s) 536, 788, 834, 1311
MspA1I CMGCKG 1 cut(s) 618
MspCI CTTAAG 1 cut(s) 1310
MspI CCGG 5 cut(s) 150, 341, 953, 1183, 1210
MspR9I CCNGG 4 cut(s) 121, 264, 1184, 1211
MunI CAATTG 1 cut(s) 1079
Mva1269I GAATGC 1 cut(s) 877
MvaI CCWGG 2 cut(s) 121, 264
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 3 cut(s) 56, 140, 1259
NciI CCSGG 2 cut(s) 1184, 1211
NdeI CATATG 1 cut(s) 271
NdeII GATC 7 cut(s) 67, 337, 377, 469, 889, 1060, 1213
NlaIII CATG 2 cut(s) 370, 1338
NlaIV GGNNCC 3 cut(s) 133, 493, 550
NmeAIII GCCGAG 1 cut(s) 1279
NmuCI GTSAC 2 cut(s) 307, 1385
NruI TCGCGA 1 cut(s) 486
NspI RCATGY 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 121
PcsI WCGNNNNNNNCGW 1 cut(s) 898
PctI GAATGC 1 cut(s) 877
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 9 cut(s) 11, 443, 477, 518, 557, 589, 630, 1157, 1232
PkrI GCNGC 2 cut(s) 620, 678
PleI GAGTC 2 cut(s) 1325, 1369
PpsI GAGTC 2 cut(s) 1325, 1369
Psp124BI GAGCTC 1 cut(s) 1264
Psp6I CCWGG 2 cut(s) 119, 262
PspGI CCWGG 2 cut(s) 119, 262
PspN4I GGNNCC 3 cut(s) 133, 493, 550
PspPI GGNCC 2 cut(s) 266, 549
PsuI RGATCY 2 cut(s) 377, 1060
RruI TCGCGA 1 cut(s) 486
RsaI GTAC 4 cut(s) 211, 581, 997, 1354
RsaNI GTAC 4 cut(s) 210, 580, 996, 1353
SacI GAGCTC 1 cut(s) 1264
SapI GCTCTTC 1 cut(s) 121
SaqAI TTAA 4 cut(s) 536, 788, 834, 1311
SatI GCNGC 2 cut(s) 619, 677
Sau3AI GATC 7 cut(s) 67, 337, 377, 469, 889, 1060, 1213
Sau96I GGNCC 2 cut(s) 266, 549
SchI GAGTC 2 cut(s) 1325, 1370
ScrFI CCNGG 4 cut(s) 121, 264, 1184, 1211
SduI GDGCHC 1 cut(s) 1264
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 6 cut(s) 14, 37, 46, 261, 829, 958
SfcI CTRYAG 2 cut(s) 705, 896
SinI GGWCC 2 cut(s) 266, 549
SmlI CTYRAG 2 cut(s) 884, 1310
SmoI CTYRAG 2 cut(s) 884, 1310
Sse9I AATT 9 cut(s) 169, 423, 447, 656, 781, 980, 1079, 1100, 1168
SsiI CCGC 9 cut(s) 187, 217, 250, 316, 606, 616, 679, 861, 938
SspMI CTAG 3 cut(s) 762, 812, 1383
SstI GAGCTC 1 cut(s) 1264
StyD4I CCNGG 4 cut(s) 119, 262, 1182, 1209
StyI CCWWGG 1 cut(s) 795
TaaI ACNGT 7 cut(s) 202, 313, 324, 1000, 1018, 1046, 1132
TaiI ACGT 1 cut(s) 1379
TaqI TCGA 6 cut(s) 96, 255, 472, 500, 587, 635
TasI AATT 9 cut(s) 169, 423, 447, 656, 781, 980, 1079, 1100, 1168
TatI WGTACW 1 cut(s) 1352
TfiI GAWTC 9 cut(s) 11, 443, 477, 518, 557, 589, 630, 1157, 1232
Tru1I TTAA 4 cut(s) 536, 788, 834, 1311
Tru9I TTAA 4 cut(s) 536, 788, 834, 1311
TscAI CASTG 1 cut(s) 1350
TseFI GTSAC 2 cut(s) 307, 1385
TseI GCWGC 2 cut(s) 618, 676
Tsp45I GTSAC 2 cut(s) 307, 1385
TspDTI ATGAA 2 cut(s) 408, 699
TspGWI ACGGA 2 cut(s) 95, 530
TspRI CASTG 1 cut(s) 1350
Vha464I CTTAAG 1 cut(s) 1310
VpaK11BI GGWCC 2 cut(s) 266, 549
XapI RAATTY 3 cut(s) 169, 656, 781
XceI RCATGY 1 cut(s) 370
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 3 cut(s) 762, 812, 1383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.