Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

16037340 .. 16038298

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG092000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACTGTGGATGAAATTGAAGAGATGAGGAAACAATACTGCATTCCGGATATCGTTGGACTTCATCTGCTGGAGAAGCGCGAACTTGCTCATGACCCGCCTGATGGTCATATAGACAAAGATAAAAATAACACGATTGAGAGATATGGTGAGGGGAGTGTTCCGCAGAAGTTTCAGTTTAAAGAGGACTTGCACTATTCGCTGTGTGGCCAGGAGCTGGCGCGTTTAAAGCGGATAGAGTATATAGTAAAGGAGAAGGGTCCTTATAATGTCACCAAATTGACCTGTTGGGAGTCGTTGATCCAGTGTGGCACAGCCTCTAGGCCAACACGTATTGATAACGACGCTGCCCAGCAAAAGATCAACAGGATGGCAGGGAATCCAATGGAGTGGTTGGTGACGTTGGATCTCGTTGCAACAGAAGCCAAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.63

Weight (kDa)

5.83

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccII	CGCG	2 cut(s)	81, 223
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	3 cut(s)	98, 164, 232
AclWI	GGATC	2 cut(s)	295, 414
AcoI	YGGCCR	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	104, 217
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	217
AluI	AGCT	1 cut(s)	217
AlwI	GGATC	2 cut(s)	295, 414
AlwNI	CAGNNNCTG	1 cut(s)	217
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	2 cut(s)	208, 323
ApeKI	GCWGC	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	81, 223
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	3 cut(s)	161, 265, 409
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	210
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	98, 364
BciT130I	CCWGG	1 cut(s)	212
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	349
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	92
BsaAI	YACGTR	1 cut(s)	332
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 217
Bse1I	ACTGG	1 cut(s)	304
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	2 cut(s)	16, 375
BseLI	CCNNNNNNNGG	2 cut(s)	104, 217
BseNI	ACTGG	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	334
BseYI	CCCAGC	1 cut(s)	351
Bsh1236I	CGCG	2 cut(s)	81, 223
BshFI	GGCC	2 cut(s)	210, 325
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	104, 217
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	2 cut(s)	210, 325
Bsp13I	TCCGGA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	300, 360, 406
BspACI	CCGC	3 cut(s)	98, 164, 232
BspANI	GGCC	2 cut(s)	210, 325
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	2 cut(s)	81, 223
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	295, 414
BsrI	ACTGG	1 cut(s)	304
BssMI	GATC	3 cut(s)	300, 360, 406
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	16, 375
BstFNI	CGCG	2 cut(s)	81, 223
BstHHI	GCGC	2 cut(s)	81, 223
BstKTI	GATC	3 cut(s)	303, 363, 409
BstMBI	GATC	3 cut(s)	300, 360, 406
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 199, 229, 422
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	210
BstUI	CGCG	2 cut(s)	81, 223
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	210, 325
BtsCI	GGATG	2 cut(s)	16, 375
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	217
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	2 cut(s)	81, 223
Cfr13I	GGNCC	1 cut(s)	260
CseI	GACGC	1 cut(s)	353
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	5 cut(s)	210, 217, 317, 325, 425
CviKI_1	RGCY	5 cut(s)	210, 217, 317, 325, 425
DpnI	GATC	3 cut(s)	302, 362, 408
DpnII	GATC	3 cut(s)	300, 360, 406
DraI	TTTAAA	2 cut(s)	181, 228
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	52
FaeI	CATG	1 cut(s)	95
FaiI	YATR	7 cut(s)	93, 111, 113, 147, 243, 245, 267
FatI	CATG	1 cut(s)	91
FauI	CCCGC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	348
FokI	GGATG	2 cut(s)	23, 382
Fsp4HI	GCNGC	1 cut(s)	348
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	2 cut(s)	80, 222
GluI	GCNGC	1 cut(s)	348
GsaI	CCCAGC	1 cut(s)	355
GsuI	CTGGAG	1 cut(s)	92
HaeIII	GGCC	2 cut(s)	210, 325
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	2 cut(s)	81, 223
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	2 cut(s)	79, 221
HinP1I	GCGC	2 cut(s)	79, 221
HinfI	GANTC	2 cut(s)	293, 379
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	3 cut(s)	161, 265, 409
Hpy188III	TCNNGA	2 cut(s)	47, 92
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	250
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	2 cut(s)	331, 401
HpyCH4V	TGCA	3 cut(s)	42, 193, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 199, 229, 422
HpySE526I	ACGT	2 cut(s)	331, 401
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	2 cut(s)	79, 221
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	300, 360, 406
LmnI	GCTCC	1 cut(s)	214
Lsp1109I	GCAGC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	331, 401
MaeIII	GTNAC	2 cut(s)	271, 397
MalI	GATC	3 cut(s)	302, 362, 408
MboI	GATC	3 cut(s)	300, 360, 406
MboII	GAAGA	1 cut(s)	32
MflI	RGATCY	1 cut(s)	406
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	2 cut(s)	15, 278
MluNI	TGGCCA	1 cut(s)	210
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	37, 384
MnlI	CCTC	4 cut(s)	21, 145, 178, 328
Mox20I	TGGCCA	1 cut(s)	210
MroI	TCCGGA	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	2 cut(s)	180, 227
Msp20I	TGGCCA	1 cut(s)	210
MspI	CCGG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	212
Mva1269I	GAATGC	1 cut(s)	42
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	2 cut(s)	81, 223
MwoI	GCNNNNNNNGC	4 cut(s)	76, 199, 229, 422
NdeII	GATC	3 cut(s)	300, 360, 406
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	271, 397
PagI	TCATGA	1 cut(s)	91
PctI	GAATGC	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	349
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Ppu21I	YACGTR	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	260
PsiI	TTATAA	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	351
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	260
PspPPI	RGGWCCY	1 cut(s)	260
PstNI	CAGNNNCTG	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	180, 227
SatI	GCNGC	1 cut(s)	348
Sau3AI	GATC	3 cut(s)	300, 360, 406
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	212
SetI	ASST	5 cut(s)	219, 287, 334, 404, 434
SinI	GGWCC	1 cut(s)	260
Sse9I	AATT	2 cut(s)	15, 278
SsiI	CCGC	3 cut(s)	98, 164, 232
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	2 cut(s)	334, 404
TasI	AATT	2 cut(s)	15, 278
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	2 cut(s)	180, 227
Tru9I	TTAA	2 cut(s)	180, 227
TscAI	CASTG	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	271, 397
TseI	GCWGC	1 cut(s)	347
Tsp45I	GTSAC	2 cut(s)	271, 397
TspDTI	ATGAA	2 cut(s)	27, 53
TspRI	CASTG	1 cut(s)	311
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	260
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.