RLG00000001633
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
18539299 .. 18540799
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001633

Sequence Viewer

Length: 1389 bp
ATGTCAGAAAAACAAGTTAATGTAGTAGATTGCAACAGAAAATCAGAGGCTGTTAATGTAGAAGGCAATAAAAAAAGGAAGAAGCCCAAGTCTGACAAACAGGACAAGAAGGAGCCAAGAAAAGGCGACTTGAGTACCTGGAAAAGCGCTAGGGCTCATGATGATTTTGAAAAACCGACAGCATCAAAAAGAGTAAATTCTGCTGATGATGTGGAGGTCTTCTCACTGTCTGATGACCCAAGTGATGAGCATGAAGACCTGGTAAGAGGCAATCGGTTTTCAGAAGAGGAAGACAAGATTGTGAGAGAGGCTGTTTTAAGATACATAGAGACACATGCTTTAGGGGACGATGGCCTCGACATGGTTTTGCGTTGTAAGTCCCACCCTGAAGTCAAAAACCACCCAGAATTGAAAAATTGTTGGAAGGATATTGTTGGAAGGAACCAGGTTAAGGATGCTTCTTACCTTGCTGAGGTTGCCAGAATCTCAGGAAAGATGAACTTCTATGACCACATCACCTTGGGTAATTGCTCACCGCTGGAGGCCAAACAGAAGATCTTGGGAGAGTTGATCAAGCTTGGCCACAAGATCTTTGTTAGCATGGAGTTCGAGGAGGAGAGTGAACTGGAAAGACAGCTGCAGATGGCCAGGGGCGAGTGTGATGATGCAAAACTCAAAATTTCCAGCCTCACGAAGGAAGTGTCAACTCTCAAGAAGAAGCTGGAAAAACAAACTGAGGAGAGTAAAGCACTAGAAGCCCAAGGTCATGAGCGGAAGCATGAGGTGGAGCGGTTGGCTAAGGAGTTGGAGGATAGGGATATGAACTTGGTCTTGGTGCAAGCGGGTTTGGCGAGTGCGGAAGCGGAGGTGCAGCGCTTGAAGAAGGAGATCGAGGATGTCGTTGCCCGGAAAGATCAGGAGAGAGCGGAGGCTGTAGAGAAGGAGCGTGATCAGGCTCGCTCAAATCAAGCTATGCGGAACTCTCTGTTCGGAGCGATTGATAACCTGGCTGAGGAGAAGAATCAAACAGGACCCTTGAATGAGGAGCTTAGCAGGCTTTACGAACTTGCCTGTGATACCCTGTTCCAGTATTTCATGGATAAGGGTGTGATTGACAAGAAGGTTCTGCTGGCGCTGCAGGGGGAGGAGAAGAAGAAGTATGATCAACTCAAGGCTGCCGCCAAAGATCGTGCTAGCAGTCAAGCGCCCTCCGGAGCTGATAGTGAAGAGGCAGATGTGTCCGAGGAGGAGGATGATTCCGGAACACAAACGACGAATACCACTACTTCTGTCACGACATTCACTTTCGATATCACCCCCAGCACCCAGCTTCCGGTCGCTCCTAGCGTGACTCCTCAAACTGGCTACTCCTTGGATATTGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

52.05

Weight (kDa)

5.11

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 772, 790, 926
AccIII TCCGGA 2 cut(s) 1211, 1259
AciI CCGC 9 cut(s) 536, 772, 790, 842, 857, 863, 926, 976, 1179
AcoI YGGCCR 2 cut(s) 580, 645
AcsI RAATTY 2 cut(s) 196, 678
AcuI CTGAAG 1 cut(s) 408
AfaI GTAC 1 cut(s) 136
AfeI AGCGCT 2 cut(s) 148, 875
AfiI CCNNNNNNNGG 8 cut(s) 122, 361, 451, 472, 694, 1012, 1333, 1361
AgsI TTSAA 4 cut(s) 170, 412, 880, 1039
AjnI CCWGG 5 cut(s) 137, 258, 444, 647, 1005
AjuI GAANNNNNNNTTGG 2 cut(s) 815, 847
AluBI AGCT 7 cut(s) 577, 637, 721, 971, 1048, 1217, 1330
AluI AGCT 7 cut(s) 577, 637, 721, 971, 1048, 1217, 1330
Alw26I GTCTC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 50
Aor13HI TCCGGA 2 cut(s) 1211, 1259
Aor51HI AGCGCT 2 cut(s) 148, 875
AoxI GGCC 4 cut(s) 352, 543, 580, 645
ApeKI GCWGC 4 cut(s) 637, 871, 1135, 1175
ApoI RAATTY 2 cut(s) 196, 678
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspLEI GCGC 4 cut(s) 149, 876, 1135, 1207
AspS9I GGNCC 1 cut(s) 1031
AsuC2I CCSGG 1 cut(s) 907
AsuHPI GGTGA 3 cut(s) 508, 525, 1306
AsuNHI GCTAGC 1 cut(s) 1193
AvaII GGWCC 1 cut(s) 1031
BaeI ACNNNNGTAYC 2 cut(s) 118, 151
BalI TGGCCA 2 cut(s) 582, 647
BanII GRGCYC 1 cut(s) 157
BbsI GAAGAC 3 cut(s) 211, 261, 297
BbvCI CCTCAGC 2 cut(s) 471, 1011
BbvI GCAGC 4 cut(s) 624, 883, 1122, 1162
BccI CCATC 2 cut(s) 344, 637
BcgI CGANNNNNNTGC 2 cut(s) 589, 623
BciT130I CCWGG 5 cut(s) 139, 260, 446, 649, 1007
BclI TGATCA 3 cut(s) 570, 949, 1162
BcnI CCSGG 1 cut(s) 907
BcoDI GTCTC 1 cut(s) 323
BfaI CTAG 4 cut(s) 150, 752, 1194, 1344
BfmI CTRYAG 3 cut(s) 638, 933, 1136
BfoI RGCGCY 4 cut(s) 150, 877, 1136, 1208
BglII AGATCT 2 cut(s) 555, 588
BisI GCNGC 5 cut(s) 638, 872, 1136, 1176, 1179
BlpI GCTNAGC 1 cut(s) 1049
BlsI GCNGC 5 cut(s) 639, 873, 1137, 1177, 1180
Bme1390I CCNGG 6 cut(s) 139, 260, 446, 649, 907, 1007
Bme18I GGWCC 1 cut(s) 1031
BmgT120I GGNCC 1 cut(s) 1031
BmiI GGNNCC 3 cut(s) 114, 443, 1033
BmrFI CCNGG 6 cut(s) 139, 260, 446, 649, 907, 1007
BmsI GCATC 3 cut(s) 191, 445, 655
BmtI GCTAGC 1 cut(s) 1197
BpiI GAAGAC 3 cut(s) 211, 261, 297
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 1 cut(s) 560
Bpu10I CCTNAGC 3 cut(s) 471, 798, 1011
Bpu1102I GCTNAGC 1 cut(s) 1049
BpuEI CTTGAG 3 cut(s) 151, 695, 1154
BpuMI CCSGG 1 cut(s) 907
BsaJI CCNNGG 5 cut(s) 519, 648, 760, 1242, 1371
BsaWI WCCGGW 3 cut(s) 1211, 1259, 1333
Bsc4I CCNNNNNNNGG 8 cut(s) 122, 361, 451, 472, 694, 1012, 1333, 1361
Bse1I ACTGG 3 cut(s) 630, 1087, 1366
BseAI TCCGGA 2 cut(s) 1211, 1259
BseBI CCWGG 5 cut(s) 139, 260, 446, 649, 1007
BseDI CCNNGG 5 cut(s) 519, 648, 760, 1242, 1371
BseGI GGATG 3 cut(s) 460, 901, 1258
BseLI CCNNNNNNNGG 8 cut(s) 122, 361, 451, 472, 694, 1012, 1333, 1361
BseMII CTCAG 4 cut(s) 462, 501, 726, 1002
BseNI ACTGG 3 cut(s) 630, 1087, 1366
BseRI GAGGAG 9 cut(s) 626, 629, 752, 1028, 1058, 1160, 1259, 1262, 1344
BseXI GCAGC 4 cut(s) 624, 883, 1122, 1162
BseYI CCCAGC 2 cut(s) 1319, 1326
BsgI GTGCAG 1 cut(s) 890
Bsh1285I CGRYCG 1 cut(s) 1338
BshFI GGCC 4 cut(s) 354, 545, 582, 647
BsiEI CGRYCG 1 cut(s) 1338
BsiSI CCGG 4 cut(s) 907, 1212, 1260, 1334
BslFI GGGAC 2 cut(s) 359, 364
BslI CCNNNNNNNGG 8 cut(s) 122, 361, 451, 472, 694, 1012, 1333, 1361
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 2 cut(s) 359, 364
BsnI GGCC 4 cut(s) 354, 545, 582, 647
Bsp1286I GDGCHC 1 cut(s) 157
Bsp13I TCCGGA 2 cut(s) 1211, 1259
Bsp143I GATC 8 cut(s) 555, 570, 588, 888, 913, 949, 1162, 1186
Bsp1720I GCTNAGC 1 cut(s) 1049
BspACI CCGC 9 cut(s) 536, 772, 790, 842, 857, 863, 926, 976, 1179
BspANI GGCC 4 cut(s) 354, 545, 582, 647
BspCNI CTCAG 4 cut(s) 463, 500, 727, 1003
BspEI TCCGGA 2 cut(s) 1211, 1259
BspHI TCATGA 2 cut(s) 157, 766
BspLI GGNNCC 3 cut(s) 114, 443, 1033
BspMAI CTGCAG 2 cut(s) 642, 1140
BspOI GCTAGC 1 cut(s) 1197
BsrBI CCGCTC 3 cut(s) 772, 790, 926
BsrI ACTGG 3 cut(s) 630, 1087, 1366
BssECI CCNNGG 5 cut(s) 519, 648, 760, 1242, 1371
BssMI GATC 8 cut(s) 555, 570, 588, 888, 913, 949, 1162, 1186
BssT1I CCWWGG 3 cut(s) 519, 760, 1371
Bst2UI CCWGG 5 cut(s) 139, 260, 446, 649, 1007
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 279, 1221
BstC8I GCNNGC 5 cut(s) 840, 958, 1055, 1131, 1195
BstDEI CTNAG 6 cut(s) 471, 487, 735, 798, 1011, 1049
BstENI CCTNNNNNAGG 3 cut(s) 470, 692, 1010
BstF5I GGATG 3 cut(s) 460, 901, 1258
BstH2I RGCGCY 4 cut(s) 150, 877, 1136, 1208
BstHHI GCGC 4 cut(s) 149, 876, 1135, 1207
BstKTI GATC 8 cut(s) 558, 573, 591, 891, 916, 952, 1165, 1189
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 8 cut(s) 555, 570, 588, 888, 913, 949, 1162, 1186
BstMCI CGRYCG 1 cut(s) 1338
BstMWI GCNNNNNNNGC 5 cut(s) 476, 755, 848, 1054, 1135
BstNI CCWGG 5 cut(s) 139, 260, 446, 649, 1007
BstNSI RCATGY 1 cut(s) 338
BstSCI CCNGG 6 cut(s) 137, 258, 444, 647, 905, 1005
BstSFI CTRYAG 3 cut(s) 638, 933, 1136
BstV1I GCAGC 4 cut(s) 624, 883, 1122, 1162
BstV2I GAAGAC 3 cut(s) 211, 261, 297
BstX2I RGATCY 2 cut(s) 555, 588
BstYI RGATCY 2 cut(s) 555, 588
BsuRI GGCC 4 cut(s) 354, 545, 582, 647
BtsCI GGATG 3 cut(s) 460, 901, 1258
BtsIMutI CAGTG 1 cut(s) 224
Cac8I GCNNGC 5 cut(s) 840, 958, 1055, 1131, 1195
CaiI CAGNNNCTG 1 cut(s) 50
CciI TCATGA 2 cut(s) 157, 766
CfoI GCGC 4 cut(s) 149, 876, 1135, 1207
Cfr13I GGNCC 1 cut(s) 1031
CsiI ACCWGGT 2 cut(s) 258, 444
Csp6I GTAC 1 cut(s) 135
CviAII CATG 8 cut(s) 158, 251, 335, 361, 601, 767, 779, 1096
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 6 cut(s) 471, 487, 735, 798, 1011, 1049
DpnI GATC 8 cut(s) 557, 572, 590, 890, 915, 951, 1164, 1188
DpnII GATC 8 cut(s) 555, 570, 588, 888, 913, 949, 1162, 1186
EaeI YGGCCR 2 cut(s) 580, 645
Eam1104I CTCTTC 2 cut(s) 279, 1221
EarI CTCTTC 2 cut(s) 279, 1221
Eco130I CCWWGG 3 cut(s) 519, 760, 1371
Eco24I GRGCYC 1 cut(s) 157
Eco32I GATATC 1 cut(s) 1312
Eco47I GGWCC 1 cut(s) 1031
Eco47III AGCGCT 2 cut(s) 148, 875
Eco57I CTGAAG 1 cut(s) 408
EcoNI CCTNNNNNAGG 3 cut(s) 470, 692, 1010
EcoO109I RGGNCCY 1 cut(s) 1031
EcoRII CCWGG 5 cut(s) 137, 258, 444, 647, 1005
EcoRV GATATC 1 cut(s) 1312
EcoT14I CCWWGG 3 cut(s) 519, 760, 1371
EcoT38I GRGCYC 1 cut(s) 157
ErhI CCWWGG 3 cut(s) 519, 760, 1371
FaeI CATG 8 cut(s) 161, 254, 338, 364, 604, 770, 782, 1099
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 2 cut(s) 359, 364
FatI CATG 8 cut(s) 157, 250, 334, 360, 600, 766, 778, 1095
FauI CCCGC 1 cut(s) 835
FbaI TGATCA 3 cut(s) 570, 949, 1162
Fnu4HI GCNGC 5 cut(s) 638, 872, 1136, 1176, 1179
FokI GGATG 3 cut(s) 467, 908, 1265
FriOI GRGCYC 1 cut(s) 157
Fsp4HI GCNGC 5 cut(s) 638, 872, 1136, 1176, 1179
FspBI CTAG 4 cut(s) 150, 752, 1194, 1344
GlaI GCGC 4 cut(s) 148, 875, 1134, 1206
GluI GCNGC 5 cut(s) 638, 872, 1136, 1176, 1179
GsaI CCCAGC 2 cut(s) 1323, 1330
GsuI CTGGAG 1 cut(s) 560
HaeII RGCGCY 4 cut(s) 150, 877, 1136, 1208
HaeIII GGCC 4 cut(s) 354, 545, 582, 647
HapII CCGG 4 cut(s) 907, 1212, 1260, 1334
HhaI GCGC 4 cut(s) 149, 876, 1135, 1207
Hin1II CATG 8 cut(s) 161, 254, 338, 364, 604, 770, 782, 1099
Hin6I GCGC 4 cut(s) 147, 874, 1133, 1205
HinP1I GCGC 4 cut(s) 147, 874, 1133, 1205
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 1 cut(s) 575
HinfI GANTC 4 cut(s) 483, 1021, 1256, 1351
HpaII CCGG 4 cut(s) 907, 1212, 1260, 1334
HphI GGTGA 3 cut(s) 508, 525, 1306
Hpy166II GTNNAC 2 cut(s) 623, 705
Hpy188I TCNGA 7 cut(s) 7, 46, 94, 232, 283, 992, 1243
Hpy188III TCNNGA 9 cut(s) 158, 489, 691, 712, 767, 917, 1212, 1260, 1294
Hpy8I GTNNAC 2 cut(s) 623, 705
Hpy99I CGWCG 1 cut(s) 1276
HpyAV CCTTC 8 cut(s) 56, 103, 418, 432, 688, 877, 934, 1114
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 33, 640, 668, 838, 871, 1138
HpyF10VI GCNNNNNNNGC 5 cut(s) 476, 755, 848, 1054, 1135
HpyF3I CTNAG 6 cut(s) 471, 487, 735, 798, 1011, 1049
Hsp92II CATG 8 cut(s) 161, 254, 338, 364, 604, 770, 782, 1099
HspAI GCGC 4 cut(s) 147, 874, 1133, 1205
Kpn2I TCCGGA 2 cut(s) 1211, 1259
Ksp22I TGATCA 3 cut(s) 570, 949, 1162
Kzo9I GATC 8 cut(s) 555, 570, 588, 888, 913, 949, 1162, 1186
LmnI GCTCC 7 cut(s) 112, 787, 943, 992, 1045, 1214, 1345
Lsp1109I GCAGC 4 cut(s) 624, 883, 1122, 1162
LweI GCATC 3 cut(s) 191, 445, 655
MabI ACCWGGT 2 cut(s) 258, 444
MaeI CTAG 4 cut(s) 150, 752, 1194, 1344
MaeIII GTNAC 2 cut(s) 1291, 1348
MalI GATC 8 cut(s) 557, 572, 590, 890, 915, 951, 1164, 1188
MbiI CCGCTC 3 cut(s) 772, 790, 926
MboI GATC 8 cut(s) 555, 570, 588, 888, 913, 949, 1162, 1186
MflI RGATCY 2 cut(s) 555, 588
MhlI GDGCHC 1 cut(s) 157
MlsI TGGCCA 2 cut(s) 582, 647
MluCI AATT 6 cut(s) 196, 407, 415, 526, 678, 1384
MluNI TGGCCA 2 cut(s) 582, 647
MlyI GAGTC 1 cut(s) 1345
MmeI TCCRAC 3 cut(s) 401, 415, 786
Mox20I TGGCCA 2 cut(s) 582, 647
MroI TCCGGA 2 cut(s) 1211, 1259
MscI TGGCCA 2 cut(s) 582, 647
MseI TTAA 4 cut(s) 18, 54, 317, 450
Msp20I TGGCCA 2 cut(s) 582, 647
MspA1I CMGCKG 2 cut(s) 538, 637
MspI CCGG 4 cut(s) 907, 1212, 1260, 1334
MspR9I CCNGG 6 cut(s) 139, 260, 446, 649, 907, 1007
MvaI CCWGG 5 cut(s) 139, 260, 446, 649, 1007
MwoI GCNNNNNNNGC 5 cut(s) 476, 755, 848, 1054, 1135
NciI CCSGG 1 cut(s) 907
NdeII GATC 8 cut(s) 555, 570, 588, 888, 913, 949, 1162, 1186
NheI GCTAGC 1 cut(s) 1193
NlaIII CATG 8 cut(s) 161, 254, 338, 364, 604, 770, 782, 1099
NlaIV GGNNCC 3 cut(s) 114, 443, 1033
NmuCI GTSAC 2 cut(s) 1291, 1348
NspI RCATGY 1 cut(s) 338
PagI TCATGA 2 cut(s) 157, 766
PcsI WCGNNNNNNNCGW 3 cut(s) 354, 897, 1344
PfeI GAWTC 3 cut(s) 483, 1021, 1256
PkrI GCNGC 5 cut(s) 639, 873, 1137, 1177, 1180
PleI GAGTC 1 cut(s) 1345
PpsI GAGTC 1 cut(s) 1345
PpuMI RGGWCCY 1 cut(s) 1031
Psp5II RGGWCCY 1 cut(s) 1031
Psp6I CCWGG 5 cut(s) 137, 258, 444, 647, 1005
PspFI CCCAGC 2 cut(s) 1319, 1326
PspGI CCWGG 5 cut(s) 137, 258, 444, 647, 1005
PspN4I GGNNCC 3 cut(s) 114, 443, 1033
PspPI GGNCC 1 cut(s) 1031
PspPPI RGGWCCY 1 cut(s) 1031
PstI CTGCAG 2 cut(s) 642, 1140
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 2 cut(s) 555, 588
PvuII CAGCTG 1 cut(s) 637
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SaqAI TTAA 4 cut(s) 18, 54, 317, 450
SatI GCNGC 5 cut(s) 638, 872, 1136, 1176, 1179
Sau3AI GATC 8 cut(s) 555, 570, 588, 888, 913, 949, 1162, 1186
Sau96I GGNCC 1 cut(s) 1031
SchI GAGTC 1 cut(s) 1345
ScrFI CCNGG 6 cut(s) 139, 260, 446, 649, 907, 1007
SduI GDGCHC 1 cut(s) 157
SexAI ACCWGGT 2 cut(s) 258, 444
SfaNI GCATC 3 cut(s) 191, 445, 655
SfcI CTRYAG 3 cut(s) 638, 933, 1136
SinI GGWCC 1 cut(s) 1031
SmlI CTYRAG 3 cut(s) 130, 710, 1169
SmoI CTYRAG 3 cut(s) 130, 710, 1169
Sse9I AATT 6 cut(s) 196, 407, 415, 526, 678, 1384
SsiI CCGC 9 cut(s) 536, 772, 790, 842, 857, 863, 926, 976, 1179
SspMI CTAG 4 cut(s) 150, 752, 1194, 1344
StyD4I CCNGG 6 cut(s) 137, 258, 444, 647, 905, 1005
StyI CCWWGG 3 cut(s) 519, 760, 1371
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 4 cut(s) 357, 609, 891, 1308
TasI AATT 6 cut(s) 196, 407, 415, 526, 678, 1384
TauI GCSGC 1 cut(s) 1181
TfiI GAWTC 3 cut(s) 483, 1021, 1256
Tru1I TTAA 4 cut(s) 18, 54, 317, 450
Tru9I TTAA 4 cut(s) 18, 54, 317, 450
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 2 cut(s) 1291, 1348
TseI GCWGC 4 cut(s) 637, 871, 1135, 1175
Tsp45I GTSAC 2 cut(s) 1291, 1348
TspDTI ATGAA 4 cut(s) 267, 512, 836, 1084
TspRI CASTG 1 cut(s) 231
VpaK11BI GGWCC 1 cut(s) 1031
XagI CCTNNNNNAGG 3 cut(s) 470, 692, 1010
XapI RAATTY 2 cut(s) 196, 678
XceI RCATGY 1 cut(s) 338
XspI CTAG 4 cut(s) 150, 752, 1194, 1344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.