Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Reverse (-)

36900312 .. 36900673

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG332900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCAGGTAAGAAGCTTGAGTTTAAGCTACCCCGGAAGCGTGCAAGAGCATCTGAGTCTGAGGGTCCTTCAAATCATTTGGAGGAAGAAGGAAATGTAAGAGATCTTGAAGAGGGTTATGTCTATACTAGCATTGAGGCCATAGACCATCTTGAGGATGAAGAAATTAAGCAGATGAGAGAACAGTACTACATTGCAAATACCGTCAGGCTCCGTCTACTGAGGAAGGGTAAGTTTGTGCATGATCCTTCCTATGATGATGTAGCAATTGATCACGCAAAATTGAAGATGGGATTGTACCTTCCACTGGATCCCTTCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

12.5

Weight (kDa)

5.57

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	217
AclWI	GGATC	3 cut(s)	239, 305, 318
AfaI	GTAC	2 cut(s)	188, 299
AfiI	CCNNNNNNNGG	2 cut(s)	154, 307
AgsI	TTSAA	3 cut(s)	72, 110, 286
AluBI	AGCT	2 cut(s)	16, 28
AluI	AGCT	2 cut(s)	16, 28
AlwI	GGATC	3 cut(s)	239, 305, 318
AoxI	GGCC	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	310
BccI	CCATC	2 cut(s)	156, 283
BclI	TGATCA	1 cut(s)	271
BcnI	CCSGG	1 cut(s)	34
BfaI	CTAG	1 cut(s)	129
BglII	AGATCT	1 cut(s)	103
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	3 cut(s)	66, 212, 312
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	38, 173
BpuMI	CCSGG	1 cut(s)	34
BsaJI	CCNNGG	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 307
Bse1I	ACTGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	2 cut(s)	154, 307
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	45, 51, 212
BseNI	ACTGG	1 cut(s)	312
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	2 cut(s)	154, 307
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	4 cut(s)	103, 244, 271, 310
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	3 cut(s)	46, 52, 213
BspLI	GGNNCC	3 cut(s)	66, 212, 312
BspPI	GGATC	3 cut(s)	239, 305, 318
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	312
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	4 cut(s)	103, 244, 271, 310
Bst4CI	ACNGT	2 cut(s)	186, 205
Bst6I	CTCTTC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	3 cut(s)	54, 60, 221
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	4 cut(s)	106, 247, 274, 313
BstMBI	GATC	4 cut(s)	103, 244, 271, 310
BstSCI	CCNGG	1 cut(s)	32
BstX2I	RGATCY	2 cut(s)	103, 310
BstYI	RGATCY	2 cut(s)	103, 310
BsuRI	GGCC	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	187, 298
CviAII	CATG	2 cut(s)	242, 319
CviJI	RGCY	4 cut(s)	16, 28, 140, 211
CviKI_1	RGCY	4 cut(s)	16, 28, 140, 211
CviQI	GTAC	2 cut(s)	187, 298
DdeI	CTNAG	3 cut(s)	54, 60, 221
DpnI	GATC	4 cut(s)	105, 246, 273, 312
DpnII	GATC	4 cut(s)	103, 244, 271, 310
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	65
FaeI	CATG	2 cut(s)	245, 322
FaiI	YATR	6 cut(s)	120, 126, 143, 243, 255, 320
FatI	CATG	2 cut(s)	241, 318
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	217
FokI	GGATG	1 cut(s)	170
FspBI	CTAG	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	34
Hin1II	CATG	2 cut(s)	245, 322
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	55, 61
Hpy188III	TCNNGA	2 cut(s)	107, 152
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	5 cut(s)	78, 83, 220, 258, 311
HpyCH4III	ACNGT	2 cut(s)	186, 205
HpyCH4V	TGCA	3 cut(s)	44, 197, 241
HpyF3I	CTNAG	3 cut(s)	54, 60, 221
Hsp92II	CATG	2 cut(s)	245, 322
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	4 cut(s)	103, 244, 271, 310
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	3 cut(s)	47, 193, 293
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	129
MalI	GATC	4 cut(s)	105, 246, 273, 312
MboI	GATC	4 cut(s)	103, 244, 271, 310
MboII	GAAGA	4 cut(s)	98, 122, 173, 298
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	2 cut(s)	103, 310
MluCI	AATT	3 cut(s)	165, 267, 281
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	55, 76, 106, 130, 148, 216
MseI	TTAA	2 cut(s)	24, 168
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	34
MunI	CAATTG	1 cut(s)	267
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	4 cut(s)	103, 244, 271, 310
NlaIII	CATG	2 cut(s)	245, 322
NlaIV	GGNNCC	3 cut(s)	66, 212, 312
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	65
PspN4I	GGNNCC	3 cut(s)	66, 212, 312
PspPI	GGNCC	1 cut(s)	65
PspPPI	RGGWCCY	1 cut(s)	65
PsuI	RGATCY	2 cut(s)	103, 310
RsaI	GTAC	2 cut(s)	188, 299
RsaNI	GTAC	2 cut(s)	187, 298
SaqAI	TTAA	2 cut(s)	24, 168
Sau3AI	GATC	4 cut(s)	103, 244, 271, 310
Sau96I	GGNCC	1 cut(s)	65
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	34
SetI	ASST	4 cut(s)	10, 18, 30, 303
SfaNI	GCATC	1 cut(s)	59
SinI	GGWCC	1 cut(s)	65
SmlI	CTYRAG	2 cut(s)	17, 152
SmoI	CTYRAG	2 cut(s)	17, 152
Sse9I	AATT	3 cut(s)	165, 267, 281
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	2 cut(s)	186, 205
TasI	AATT	3 cut(s)	165, 267, 281
TatI	WGTACW	1 cut(s)	186
Tru1I	TTAA	2 cut(s)	24, 168
Tru9I	TTAA	2 cut(s)	24, 168
TscAI	CASTG	1 cut(s)	312
TspDTI	ATGAA	2 cut(s)	174, 307
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	1 cut(s)	312
VpaK11BI	GGWCC	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	217
XspI	CTAG	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.