No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922 |
| rosa_chinensis | RchiOBHm_Chr6g0267751 |
| rosa_laevigata | RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008 |
| rosa_multiflora | Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011 |
| rosa_roxburghii | Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890 |
| rosa_rugosa | Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300 |
| rosa_samantha | Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1311 |
| AccB1I | GGYRCC | 2 cut(s) | 257, 1091 |
| AccII | CGCG | 2 cut(s) | 404, 902 |
| AccIII | TCCGGA | 1 cut(s) | 205 |
| AciI | CCGC | 8 cut(s) | 302, 305, 402, 608, 763, 900, 1045, 1169 |
| AclWI | GGATC | 5 cut(s) | 404, 470, 483, 824, 837 |
| AcoI | YGGCCR | 1 cut(s) | 380 |
| AcsI | RAATTY | 2 cut(s) | 174, 1077 |
| AcuI | CTGAAG | 2 cut(s) | 861, 1061 |
| AfaI | GTAC | 1 cut(s) | 365 |
| AfeI | AGCGCT | 1 cut(s) | 1268 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 419, 1309 |
| AflII | CTTAAG | 1 cut(s) | 1034 |
| AflIII | ACRYGT | 2 cut(s) | 652, 1173 |
| AgsI | TTSAA | 6 cut(s) | 107, 227, 281, 508, 727, 1085 |
| AjiI | CACGTC | 1 cut(s) | 1174 |
| AjnI | CCWGG | 1 cut(s) | 1087 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1292, 1307, 1324, 1339 |
| AleI | CACNNNNGTG | 1 cut(s) | 533 |
| AluBI | AGCT | 8 cut(s) | 67, 169, 739, 922, 1039, 1235, 1323, 1354 |
| AluI | AGCT | 8 cut(s) | 67, 169, 739, 922, 1039, 1235, 1323, 1354 |
| Alw21I | GWGCWC | 2 cut(s) | 139, 530 |
| Alw26I | GTCTC | 1 cut(s) | 1013 |
| Alw44I | GTGCAC | 1 cut(s) | 135 |
| AlwI | GGATC | 5 cut(s) | 404, 470, 483, 824, 837 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1334 |
| Ama87I | CYCGRG | 2 cut(s) | 233, 416 |
| Aor13HI | TCCGGA | 1 cut(s) | 205 |
| Aor51HI | AGCGCT | 1 cut(s) | 1268 |
| AoxI | GGCC | 3 cut(s) | 264, 380, 1143 |
| ApaLI | GTGCAC | 1 cut(s) | 135 |
| ApeKI | GCWGC | 4 cut(s) | 805, 848, 1348, 1351 |
| ApoI | RAATTY | 2 cut(s) | 174, 1077 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 603 |
| AspA2I | CCTAGG | 1 cut(s) | 779 |
| AspLEI | GCGC | 3 cut(s) | 406, 1053, 1269 |
| AspS9I | GGNCC | 3 cut(s) | 191, 719, 1288 |
| AsuHPI | GGTGA | 5 cut(s) | 254, 266, 724, 1110, 1309 |
| AvaI | CYCGRG | 2 cut(s) | 233, 416 |
| AvaII | GGWCC | 3 cut(s) | 191, 719, 1288 |
| AvrII | CCTAGG | 1 cut(s) | 779 |
| BaeGI | GKGCMC | 2 cut(s) | 139, 1116 |
| BalI | TGGCCA | 1 cut(s) | 382 |
| BamHI | GGATCC | 2 cut(s) | 475, 829 |
| BanI | GGYRCC | 2 cut(s) | 257, 1091 |
| BbsI | GAAGAC | 3 cut(s) | 288, 872, 1157 |
| Bbv12I | GWGCWC | 2 cut(s) | 139, 530 |
| BbvCI | CCTCAGC | 2 cut(s) | 1065, 1335 |
| BbvI | GCAGC | 4 cut(s) | 817, 835, 1360, 1363 |
| BccI | CCATC | 1 cut(s) | 1159 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 859, 893, 1042, 1076 |
| BciT130I | CCWGG | 1 cut(s) | 1089 |
| BcoDI | GTCTC | 1 cut(s) | 1013 |
| BfaI | CTAG | 2 cut(s) | 780, 923 |
| BfmI | CTRYAG | 1 cut(s) | 51 |
| BfoI | RGCGCY | 1 cut(s) | 1270 |
| BfrI | CTTAAG | 1 cut(s) | 1034 |
| BfuAI | ACCTGC | 1 cut(s) | 1311 |
| BglII | AGATCT | 2 cut(s) | 47, 229 |
| BisI | GCNGC | 5 cut(s) | 305, 806, 849, 1349, 1352 |
| BlnI | CCTAGG | 1 cut(s) | 779 |
| BlsI | GCNGC | 5 cut(s) | 306, 807, 850, 1350, 1353 |
| Bme1390I | CCNGG | 1 cut(s) | 1089 |
| Bme18I | GGWCC | 3 cut(s) | 191, 719, 1288 |
| BmeT110I | CYCGRG | 2 cut(s) | 233, 416 |
| BmgBI | CACGTC | 1 cut(s) | 1174 |
| BmgT120I | GGNCC | 3 cut(s) | 191, 719, 1288 |
| BmiI | GGNNCC | 5 cut(s) | 259, 477, 720, 831, 1093 |
| BmrFI | CCNGG | 1 cut(s) | 1089 |
| BmsI | GCATC | 5 cut(s) | 666, 867, 970, 1180, 1321 |
| BpiI | GAAGAC | 3 cut(s) | 288, 872, 1157 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 562, 594 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1065, 1236, 1335 |
| BsaAI | YACGTR | 1 cut(s) | 653 |
| BsaJI | CCNNGG | 7 cut(s) | 261, 417, 689, 779, 816, 1095, 1291 |
| BsaWI | WCCGGW | 1 cut(s) | 205 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1388 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 419, 1309 |
| Bse1I | ACTGG | 3 cut(s) | 39, 259, 1233 |
| Bse3DI | GCAATG | 1 cut(s) | 494 |
| BseAI | TCCGGA | 1 cut(s) | 205 |
| BseBI | CCWGG | 1 cut(s) | 1089 |
| BseDI | CCNNGG | 7 cut(s) | 261, 417, 689, 779, 816, 1095, 1291 |
| BseGI | GGATG | 4 cut(s) | 955, 979, 985, 1022 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 419, 1309 |
| BseMI | GCAATG | 1 cut(s) | 494 |
| BseMII | CTCAG | 4 cut(s) | 990, 1056, 1250, 1326 |
| BseNI | ACTGG | 3 cut(s) | 39, 259, 1233 |
| BseSI | GKGCMC | 2 cut(s) | 139, 1116 |
| BseXI | GCAGC | 4 cut(s) | 817, 835, 1360, 1363 |
| BsgI | GTGCAG | 1 cut(s) | 1367 |
| Bsh1236I | CGCG | 2 cut(s) | 404, 902 |
| BshFI | GGCC | 3 cut(s) | 266, 382, 1145 |
| BshNI | GGYRCC | 2 cut(s) | 257, 1091 |
| BsiHKAI | GWGCWC | 2 cut(s) | 139, 530 |
| BsiHKCI | CYCGRG | 2 cut(s) | 233, 416 |
| BsiSI | CCGG | 1 cut(s) | 206 |
| BslFI | GGGAC | 2 cut(s) | 619, 764 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 419, 1309 |
| BsmAI | GTCTC | 1 cut(s) | 1013 |
| BsmFI | GGGAC | 2 cut(s) | 619, 764 |
| BsmI | GAATGC | 1 cut(s) | 492 |
| BsnI | GGCC | 3 cut(s) | 266, 382, 1145 |
| BsoBI | CYCGRG | 2 cut(s) | 233, 416 |
| Bsp1286I | GDGCHC | 3 cut(s) | 139, 530, 1116 |
| Bsp13I | TCCGGA | 1 cut(s) | 205 |
| Bsp143I | GATC | 8 cut(s) | 47, 229, 271, 409, 475, 829, 885, 1030 |
| Bsp19I | CCATGG | 2 cut(s) | 1095, 1291 |
| BspACI | CCGC | 8 cut(s) | 302, 305, 402, 608, 763, 900, 1045, 1169 |
| BspANI | GGCC | 3 cut(s) | 266, 382, 1145 |
| BspCNI | CTCAG | 4 cut(s) | 991, 1057, 1249, 1327 |
| BspEI | TCCGGA | 1 cut(s) | 205 |
| BspFNI | CGCG | 2 cut(s) | 404, 902 |
| BspHI | TCATGA | 1 cut(s) | 1243 |
| BspLI | GGNNCC | 5 cut(s) | 259, 477, 720, 831, 1093 |
| BspMI | ACCTGC | 1 cut(s) | 1311 |
| BspPI | GGATC | 5 cut(s) | 404, 470, 483, 824, 837 |
| BspQI | GCTCTTC | 1 cut(s) | 912 |
| BspT107I | GGYRCC | 2 cut(s) | 257, 1091 |
| BspTI | CTTAAG | 1 cut(s) | 1034 |
| BsrDI | GCAATG | 1 cut(s) | 494 |
| BsrI | ACTGG | 3 cut(s) | 39, 259, 1233 |
| BssECI | CCNNGG | 7 cut(s) | 261, 417, 689, 779, 816, 1095, 1291 |
| BssMI | GATC | 8 cut(s) | 47, 229, 271, 409, 475, 829, 885, 1030 |
| BssT1I | CCWWGG | 5 cut(s) | 261, 779, 816, 1095, 1291 |
| Bst2UI | CCWGG | 1 cut(s) | 1089 |
| Bst4CI | ACNGT | 6 cut(s) | 100, 287, 370, 517, 535, 587 |
| Bst6I | CTCTTC | 7 cut(s) | 204, 321, 386, 837, 912, 939, 986 |
| BstAFI | CTTAAG | 1 cut(s) | 1034 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 134, 616 |
| BstBAI | YACGTR | 1 cut(s) | 653 |
| BstC8I | GCNNGC | 2 cut(s) | 681, 985 |
| BstDEI | CTNAG | 6 cut(s) | 170, 999, 1065, 1212, 1236, 1335 |
| BstDSI | CCRYGG | 2 cut(s) | 1095, 1291 |
| BstF5I | GGATG | 4 cut(s) | 955, 979, 985, 1022 |
| BstFNI | CGCG | 2 cut(s) | 404, 902 |
| BstH2I | RGCGCY | 1 cut(s) | 1270 |
| BstHHI | GCGC | 3 cut(s) | 406, 1053, 1269 |
| BstKTI | GATC | 8 cut(s) | 50, 232, 274, 412, 478, 832, 888, 1033 |
| BstMAI | GTCTC | 1 cut(s) | 1013 |
| BstMBI | GATC | 8 cut(s) | 47, 229, 271, 409, 475, 829, 885, 1030 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 134, 616, 1232 |
| BstNI | CCWGG | 1 cut(s) | 1089 |
| BstNSI | RCATGY | 1 cut(s) | 987 |
| BstSCI | CCNGG | 1 cut(s) | 1087 |
| BstSFI | CTRYAG | 1 cut(s) | 51 |
| BstSLI | GKGCMC | 2 cut(s) | 139, 1116 |
| BstUI | CGCG | 2 cut(s) | 404, 902 |
| BstV1I | GCAGC | 4 cut(s) | 817, 835, 1360, 1363 |
| BstV2I | GAAGAC | 3 cut(s) | 288, 872, 1157 |
| BstX2I | RGATCY | 4 cut(s) | 47, 229, 475, 829 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 817, 1282 |
| BstYI | RGATCY | 4 cut(s) | 47, 229, 475, 829 |
| BsuRI | GGCC | 3 cut(s) | 266, 382, 1145 |
| BtgI | CCRYGG | 2 cut(s) | 1095, 1291 |
| BtgZI | GCGATG | 1 cut(s) | 609 |
| BtrI | CACGTC | 1 cut(s) | 1174 |
| BtsCI | GGATG | 4 cut(s) | 955, 979, 985, 1022 |
| BtsIMutI | CAGTG | 3 cut(s) | 46, 366, 1226 |
| BveI | ACCTGC | 1 cut(s) | 1311 |
| Cac8I | GCNNGC | 2 cut(s) | 681, 985 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1334 |
| CciI | TCATGA | 1 cut(s) | 1243 |
| CfoI | GCGC | 3 cut(s) | 406, 1053, 1269 |
| Cfr13I | GGNCC | 3 cut(s) | 191, 719, 1288 |
| CseI | GACGC | 1 cut(s) | 761 |
| CsiI | ACCWGGT | 1 cut(s) | 1087 |
| Csp6I | GTAC | 1 cut(s) | 364 |
| CviAII | CATG | 7 cut(s) | 407, 484, 984, 1096, 1156, 1244, 1292 |
| CviQI | GTAC | 1 cut(s) | 364 |
| DdeI | CTNAG | 6 cut(s) | 170, 999, 1065, 1212, 1236, 1335 |
| DpnI | GATC | 8 cut(s) | 49, 231, 273, 411, 477, 831, 887, 1032 |
| DpnII | GATC | 8 cut(s) | 47, 229, 271, 409, 475, 829, 885, 1030 |
| EaeI | YGGCCR | 1 cut(s) | 380 |
| Eam1104I | CTCTTC | 7 cut(s) | 204, 321, 386, 837, 912, 939, 986 |
| EarI | CTCTTC | 7 cut(s) | 204, 321, 386, 837, 912, 939, 986 |
| EciI | GGCGGA | 2 cut(s) | 291, 1184 |
| Eco130I | CCWWGG | 5 cut(s) | 261, 779, 816, 1095, 1291 |
| Eco47I | GGWCC | 3 cut(s) | 191, 719, 1288 |
| Eco47III | AGCGCT | 1 cut(s) | 1268 |
| Eco57I | CTGAAG | 2 cut(s) | 861, 1061 |
| Eco88I | CYCGRG | 2 cut(s) | 233, 416 |
| EcoO109I | RGGNCCY | 1 cut(s) | 191 |
| EcoRII | CCWGG | 1 cut(s) | 1087 |
| EcoT14I | CCWWGG | 5 cut(s) | 261, 779, 816, 1095, 1291 |
| EcoT22I | ATGCAT | 2 cut(s) | 494, 985 |
| ErhI | CCWWGG | 5 cut(s) | 261, 779, 816, 1095, 1291 |
| FaeI | CATG | 7 cut(s) | 410, 487, 987, 1099, 1159, 1247, 1295 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 443, 475 |
| FaqI | GGGAC | 2 cut(s) | 619, 764 |
| FatI | CATG | 7 cut(s) | 406, 483, 983, 1095, 1155, 1243, 1291 |
| Fnu4HI | GCNGC | 5 cut(s) | 305, 806, 849, 1349, 1352 |
| FokI | GGATG | 4 cut(s) | 962, 986, 992, 1009 |
| Fsp4HI | GCNGC | 5 cut(s) | 305, 806, 849, 1349, 1352 |
| FspBI | CTAG | 2 cut(s) | 780, 923 |
| GlaI | GCGC | 3 cut(s) | 405, 1052, 1268 |
| GluI | GCNGC | 5 cut(s) | 305, 806, 849, 1349, 1352 |
| HaeII | RGCGCY | 1 cut(s) | 1270 |
| HaeIII | GGCC | 3 cut(s) | 266, 382, 1145 |
| HapII | CCGG | 1 cut(s) | 206 |
| HgaI | GACGC | 1 cut(s) | 761 |
| HhaI | GCGC | 3 cut(s) | 406, 1053, 1269 |
| Hin1II | CATG | 7 cut(s) | 410, 487, 987, 1099, 1159, 1247, 1295 |
| Hin6I | GCGC | 3 cut(s) | 404, 1051, 1267 |
| HinP1I | GCGC | 3 cut(s) | 404, 1051, 1267 |
| HinfI | GANTC | 3 cut(s) | 182, 398, 896 |
| HpaII | CCGG | 1 cut(s) | 206 |
| HphI | GGTGA | 5 cut(s) | 254, 266, 724, 1110, 1309 |
| Hpy166II | GTNNAC | 4 cut(s) | 137, 366, 709, 1300 |
| Hpy188I | TCNGA | 3 cut(s) | 693, 841, 1000 |
| Hpy188III | TCNNGA | 5 cut(s) | 206, 233, 581, 1082, 1244 |
| Hpy8I | GTNNAC | 4 cut(s) | 137, 366, 709, 1300 |
| Hpy99I | CGWCG | 2 cut(s) | 874, 877 |
| HpyAV | CCTTC | 5 cut(s) | 490, 709, 997, 1135, 1354 |
| HpyCH4III | ACNGT | 6 cut(s) | 100, 287, 370, 517, 535, 587 |
| HpyCH4IV | ACGT | 2 cut(s) | 652, 1173 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 134, 616, 1232 |
| HpyF3I | CTNAG | 6 cut(s) | 170, 999, 1065, 1212, 1236, 1335 |
| HpySE526I | ACGT | 2 cut(s) | 652, 1173 |
| Hsp92II | CATG | 7 cut(s) | 410, 487, 987, 1099, 1159, 1247, 1295 |
| HspAI | GCGC | 3 cut(s) | 404, 1051, 1267 |
| Kpn2I | TCCGGA | 1 cut(s) | 205 |
| Kzo9I | GATC | 8 cut(s) | 47, 229, 271, 409, 475, 829, 885, 1030 |
| LguI | GCTCTTC | 1 cut(s) | 912 |
| Lsp1109I | GCAGC | 4 cut(s) | 817, 835, 1360, 1363 |
| LweI | GCATC | 5 cut(s) | 666, 867, 970, 1180, 1321 |
| MabI | ACCWGGT | 1 cut(s) | 1087 |
| MaeI | CTAG | 2 cut(s) | 780, 923 |
| MaeII | ACGT | 2 cut(s) | 652, 1173 |
| MaeIII | GTNAC | 3 cut(s) | 422, 572, 648 |
| MalI | GATC | 8 cut(s) | 49, 231, 273, 411, 477, 831, 887, 1032 |
| MboI | GATC | 8 cut(s) | 47, 229, 271, 409, 475, 829, 885, 1030 |
| MfeI | CAATTG | 1 cut(s) | 1307 |
| MflI | RGATCY | 4 cut(s) | 47, 229, 475, 829 |
| MhlI | GDGCHC | 3 cut(s) | 139, 530, 1116 |
| MlsI | TGGCCA | 1 cut(s) | 382 |
| MluCI | AATT | 7 cut(s) | 77, 174, 510, 834, 1077, 1307, 1364 |
| MluNI | TGGCCA | 1 cut(s) | 382 |
| MlyI | GAGTC | 3 cut(s) | 191, 407, 905 |
| MmeI | TCCRAC | 2 cut(s) | 453, 1263 |
| Mox20I | TGGCCA | 1 cut(s) | 382 |
| Mph1103I | ATGCAT | 2 cut(s) | 494, 985 |
| MroI | TCCGGA | 1 cut(s) | 205 |
| MroXI | GAANNNNTTC | 1 cut(s) | 603 |
| MscI | TGGCCA | 1 cut(s) | 382 |
| MslI | CAYNNNNRTG | 1 cut(s) | 533 |
| Msp20I | TGGCCA | 1 cut(s) | 382 |
| MspCI | CTTAAG | 1 cut(s) | 1034 |
| MspI | CCGG | 1 cut(s) | 206 |
| MspR9I | CCNGG | 1 cut(s) | 1089 |
| MunI | CAATTG | 1 cut(s) | 1307 |
| Mva1269I | GAATGC | 1 cut(s) | 492 |
| MvaI | CCWGG | 1 cut(s) | 1089 |
| MvnI | CGCG | 2 cut(s) | 404, 902 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 134, 616, 1232 |
| NcoI | CCATGG | 2 cut(s) | 1095, 1291 |
| NdeII | GATC | 8 cut(s) | 47, 229, 271, 409, 475, 829, 885, 1030 |
| NlaIII | CATG | 7 cut(s) | 410, 487, 987, 1099, 1159, 1247, 1295 |
| NlaIV | GGNNCC | 5 cut(s) | 259, 477, 720, 831, 1093 |
| NmuCI | GTSAC | 1 cut(s) | 422 |
| NsiI | ATGCAT | 2 cut(s) | 494, 985 |
| NspI | RCATGY | 1 cut(s) | 987 |
| OliI | CACNNNNGTG | 1 cut(s) | 533 |
| PaeI | GCATGC | 1 cut(s) | 987 |
| PaeR7I | CTCGAG | 1 cut(s) | 233 |
| PagI | TCATGA | 1 cut(s) | 1243 |
| PciSI | GCTCTTC | 1 cut(s) | 912 |
| PctI | GAATGC | 1 cut(s) | 492 |
| PdmI | GAANNNNTTC | 1 cut(s) | 603 |
| PkrI | GCNGC | 5 cut(s) | 306, 807, 850, 1350, 1353 |
| PleI | GAGTC | 3 cut(s) | 190, 406, 904 |
| PpsI | GAGTC | 3 cut(s) | 190, 406, 904 |
| Ppu21I | YACGTR | 1 cut(s) | 653 |
| PpuMI | RGGWCCY | 1 cut(s) | 191 |
| Psp5II | RGGWCCY | 1 cut(s) | 191 |
| Psp6I | CCWGG | 1 cut(s) | 1087 |
| PspGI | CCWGG | 1 cut(s) | 1087 |
| PspN4I | GGNNCC | 5 cut(s) | 259, 477, 720, 831, 1093 |
| PspPI | GGNCC | 3 cut(s) | 191, 719, 1288 |
| PspPPI | RGGWCCY | 1 cut(s) | 191 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1334 |
| PsuI | RGATCY | 4 cut(s) | 47, 229, 475, 829 |
| RsaI | GTAC | 1 cut(s) | 365 |
| RsaNI | GTAC | 1 cut(s) | 364 |
| RseI | CAYNNNNRTG | 1 cut(s) | 533 |
| SapI | GCTCTTC | 1 cut(s) | 912 |
| SatI | GCNGC | 5 cut(s) | 305, 806, 849, 1349, 1352 |
| Sau3AI | GATC | 8 cut(s) | 47, 229, 271, 409, 475, 829, 885, 1030 |
| Sau96I | GGNCC | 3 cut(s) | 191, 719, 1288 |
| SchI | GAGTC | 3 cut(s) | 191, 407, 905 |
| ScrFI | CCNGG | 1 cut(s) | 1089 |
| SduI | GDGCHC | 3 cut(s) | 139, 530, 1116 |
| SexAI | ACCWGGT | 1 cut(s) | 1087 |
| SfaNI | GCATC | 5 cut(s) | 666, 867, 970, 1180, 1321 |
| SfcI | CTRYAG | 1 cut(s) | 51 |
| Sfr274I | CTCGAG | 1 cut(s) | 233 |
| SinI | GGWCC | 3 cut(s) | 191, 719, 1288 |
| SlaI | CTCGAG | 1 cut(s) | 233 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 533 |
| SmlI | CTYRAG | 2 cut(s) | 233, 1034 |
| SmoI | CTYRAG | 2 cut(s) | 233, 1034 |
| SphI | GCATGC | 1 cut(s) | 987 |
| Sse9I | AATT | 7 cut(s) | 77, 174, 510, 834, 1077, 1307, 1364 |
| SsiI | CCGC | 8 cut(s) | 302, 305, 402, 608, 763, 900, 1045, 1169 |
| SspI | AATATT | 1 cut(s) | 223 |
| SspMI | CTAG | 2 cut(s) | 780, 923 |
| StyD4I | CCNGG | 1 cut(s) | 1087 |
| StyI | CCWWGG | 5 cut(s) | 261, 779, 816, 1095, 1291 |
| TaaI | ACNGT | 6 cut(s) | 100, 287, 370, 517, 535, 587 |
| TaiI | ACGT | 2 cut(s) | 655, 1176 |
| TaqI | TCGA | 5 cut(s) | 8, 180, 234, 314, 888 |
| TasI | AATT | 7 cut(s) | 77, 174, 510, 834, 1077, 1307, 1364 |
| TauI | GCSGC | 1 cut(s) | 307 |
| TscAI | CASTG | 3 cut(s) | 46, 373, 1233 |
| TseFI | GTSAC | 1 cut(s) | 422 |
| TseI | GCWGC | 4 cut(s) | 805, 848, 1348, 1351 |
| Tsp45I | GTSAC | 1 cut(s) | 422 |
| TspDTI | ATGAA | 9 cut(s) | 105, 108, 425, 472, 612, 927, 954, 1172, 1185 |
| TspGWI | ACGGA | 1 cut(s) | 1015 |
| TspRI | CASTG | 3 cut(s) | 46, 373, 1233 |
| Vha464I | CTTAAG | 1 cut(s) | 1034 |
| VneI | GTGCAC | 1 cut(s) | 135 |
| VpaK11BI | GGWCC | 3 cut(s) | 191, 719, 1288 |
| XapI | RAATTY | 2 cut(s) | 174, 1077 |
| XceI | RCATGY | 1 cut(s) | 987 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1162 |
| XhoI | CTCGAG | 1 cut(s) | 233 |
| XmaJI | CCTAGG | 1 cut(s) | 779 |
| XmnI | GAANNNNTTC | 1 cut(s) | 603 |
| XspI | CTAG | 2 cut(s) | 780, 923 |
| Zsp2I | ATGCAT | 2 cut(s) | 494, 985 |