Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008058.1

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

13020 .. 14114

Gene Structure 1095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008058.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgttggcaaaggagtacaaggtgaaggatgaatcgtacctgactgaggtcaccaaaatttcagaaaagatgaacttctatgatcacatcaccttgggaaattgctctccagtagaggctaagcaaaataatcttggagaagtcatcaaattagaccacaagatttttgtgagcaatgagttcgaagaggagagtgaattgaaggaagctttggtggaagctcaagaagctgaaaagagaaagagactcgaggaggttaaggcaactgccaaggatctcgccggtggccagccatctcatagtgctcatctgccatctactgctgaagcttatggtcgtgagtcgagtgtatctaatgatgataatatggatggaatgaagatgaccaccactactaccactacgactactttaacatcgattgtgataactccgagcgctcaagttcctgtttctcccggagtaactcctcaaatggatggctcgcagcctttggatatgggaactaaacttgttgtgcttcctgtgaacctgctatgctttccttgttatgtacctttatatcttctttcttttacatcgattttcagacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

198

Amino Acids

21.87

Weight (kDa)

4.97

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	540
AclWI	GGATC	1 cut(s)	282
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	3 cut(s)	17, 38, 555
AfeI	AGCGCT	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	4 cut(s)	209, 221, 230, 329
AluI	AGCT	4 cut(s)	209, 221, 230, 329
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	248
Aor51HI	AGCGCT	1 cut(s)	439
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	1 cut(s)	57
AspLEI	GCGC	1 cut(s)	440
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	3 cut(s)	34, 43, 82
AsuII	TTCGAA	1 cut(s)	183
AvaI	CYCGRG	1 cut(s)	248
BalI	TGGCCA	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	4 cut(s)	301, 322, 365, 473
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	441
BfuAI	ACCTGC	1 cut(s)	540
BisI	GCNGC	1 cut(s)	488
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	489
Bme1390I	CCNGG	1 cut(s)	459
BmeT110I	CYCGRG	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	459
BoxI	GACNNNNGTC	1 cut(s)	47
BpmI	CTGGAG	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	120
Bpu14I	TTCGAA	1 cut(s)	183
BpuEI	CTTGAG	2 cut(s)	207, 426
BpuMI	CCSGG	1 cut(s)	459
Bsa29I	ATCGAT	2 cut(s)	419, 581
BsaJI	CCNNGG	2 cut(s)	93, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	181
BseCI	ATCGAT	2 cut(s)	419, 581
BseDI	CCNNGG	2 cut(s)	93, 270
BseGI	GGATG	3 cut(s)	34, 376, 484
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	3 cut(s)	203, 266, 459
BseXI	GCAGC	1 cut(s)	499
BshFI	GGCC	1 cut(s)	288
BshVI	ATCGAT	2 cut(s)	419, 581
BsiHKAI	GWGCWC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	2 cut(s)	282, 459
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	82, 274
Bsp1720I	GCTNAGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	2 cut(s)	419, 581
BspMI	ACCTGC	1 cut(s)	540
BspPI	GGATC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	183
BsrDI	GCAATG	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	93, 270
BssMI	GATC	2 cut(s)	82, 274
BssT1I	CCWWGG	2 cut(s)	93, 270
Bst6I	CTCTTC	1 cut(s)	180
BstBI	TTCGAA	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	290, 485
BstDEI	CTNAG	2 cut(s)	45, 120
BstEII	GGTNACC	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	3 cut(s)	34, 376, 484
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	2 cut(s)	85, 277
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	2 cut(s)	82, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstPAI	GACNNNNGTC	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
Bsu15I	ATCGAT	2 cut(s)	419, 581
BsuRI	GGCC	1 cut(s)	288
BsuTUI	ATCGAT	2 cut(s)	419, 581
BtsCI	GGATG	3 cut(s)	34, 376, 484
BveI	ACCTGC	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	290, 485
CfoI	GCGC	1 cut(s)	440
Cfr10I	RCCGGY	1 cut(s)	281
ClaI	ATCGAT	2 cut(s)	419, 581
Csp6I	GTAC	3 cut(s)	16, 37, 554
CviJI	RGCY	9 cut(s)	119, 209, 221, 230, 288, 292, 329, 483, 490
CviKI_1	RGCY	9 cut(s)	119, 209, 221, 230, 288, 292, 329, 483, 490
CviQI	GTAC	3 cut(s)	16, 37, 554
DdeI	CTNAG	2 cut(s)	45, 120
DpnI	GATC	2 cut(s)	84, 276
DpnII	GATC	2 cut(s)	82, 274
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	93, 270
Eco47III	AGCGCT	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	248
Eco91I	GGTNACC	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoO65I	GGTNACC	1 cut(s)	49
EcoT14I	CCWWGG	2 cut(s)	93, 270
ErhI	CCWWGG	2 cut(s)	93, 270
FaiI	YATR	8 cut(s)	81, 300, 333, 368, 500, 538, 552, 562
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	3 cut(s)	41, 383, 491
Fsp4HI	GCNGC	1 cut(s)	488
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	2 cut(s)	282, 459
HhaI	GCGC	1 cut(s)	440
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HindIII	AAGCTT	2 cut(s)	207, 327
HinfI	GANTC	3 cut(s)	32, 246, 341
HpaII	CCGG	2 cut(s)	282, 459
HphI	GGTGA	3 cut(s)	34, 43, 82
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	3 cut(s)	64, 435, 590
Hpy188III	TCNNGA	2 cut(s)	224, 338
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	2 cut(s)	19, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	45, 120
HspAI	GCGC	1 cut(s)	438
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	2 cut(s)	82, 274
LpnPI	CCDG	8 cut(s)	53, 123, 295, 302, 462, 472, 537, 545
Lsp1109I	GCAGC	1 cut(s)	499
MaeIII	GTNAC	2 cut(s)	49, 463
MalI	GATC	2 cut(s)	84, 276
MboI	GATC	2 cut(s)	82, 274
MboII	GAAGA	3 cut(s)	197, 391, 557
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	4 cut(s)	57, 100, 149, 197
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	240, 350
MnlI	CCTC	6 cut(s)	40, 109, 181, 244, 247, 480
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	2 cut(s)	258, 413
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	2 cut(s)	282, 459
MspR9I	CCNGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	82, 274
NmuCI	GTSAC	1 cut(s)	49
NspV	TTCGAA	1 cut(s)	183
PaeR7I	CTCGAG	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	32
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	489
PleI	GAGTC	2 cut(s)	240, 349
PpsI	GAGTC	2 cut(s)	240, 349
PshAI	GACNNNNGTC	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	49
PspXI	VCTCGAGB	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	3 cut(s)	17, 38, 555
RsaNI	GTAC	3 cut(s)	16, 37, 554
SaqAI	TTAA	2 cut(s)	258, 413
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	2 cut(s)	82, 274
SchI	GAGTC	2 cut(s)	240, 350
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	307
Sfr274I	CTCGAG	1 cut(s)	248
SfuI	TTCGAA	1 cut(s)	183
SgrAI	CRCCGGYG	1 cut(s)	281
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	3 cut(s)	222, 248, 441
SmoI	CTYRAG	3 cut(s)	222, 248, 441
Sse9I	AATT	4 cut(s)	57, 100, 149, 197
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	93, 270
TaqI	TCGA	5 cut(s)	183, 249, 344, 419, 581
TasI	AATT	4 cut(s)	57, 100, 149, 197
TatI	WGTACW	1 cut(s)	15
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	258, 413
Tru9I	TTAA	2 cut(s)	258, 413
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	45, 86, 392
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	57
XhoI	CTCGAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.