Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Reverse (-)

19290662 .. 19295702

Gene Structure 5041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26312.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGAACTCAAGTTACCTTTGGGGTAGAGCAAGGCCCTTATTTATAGGCACCGAGGCAGGGGTTTTGCGCTGGATTGAGGATGCCAGCTGTCGTGCACAGATAGTTCAGTTGAGAGTTCCTCGAAGAGCAGAGTATTTGAAAATGTTTGATCGTGCTCCTGAATTTGGATCCAATTGGCAATCGGGAGCCTTTATTGCGATGAGAGGATGGAAAAAAGAGTCTTCTCAACTTCCCCTGTATCGCCAGGGCTTGGAGATGTTGATAACATATGGTTTGTCTCGTAAGCAAGAAAAATTTGATGGTTTTATGATGCAAGATGAAAATGTAGGTTCCTTGCTAGCAAATGTTTGTGCTAGGGGCAAATATGCACAGTCTGTTCAAGTGAGTCCCCCAGACTTTCGTCATGTTGCTGGGTGCGAGTTTCATGATATGCCACCCAGAGAAGGAGAACTTGTCCGTAGGGGGAACAATAGAAGGAAACCCAAACGCCATCTTTTTGAAAGATTGACTCCTCCGGAGATTCCAGATATTCCAGCCGTTCGAGAAGATGTCCCTGAATCTGCTCATGAGTTTTCAAAGTGCACTGACCTTCTCGTTCGTAAAATTGCGGCAGCGCTGATTGGTGAGCCTCTGCCTGTGAAGGAGAACATTTCACCCGGCGAGGAAGTTTTCCATCGGAAGTGTAATGTTGTTCTTCCAGACTTGAAGGAGAAAGAGAAGATGGAAAAGACCATTAGATCTGTTGCTCGTCTTGAAGCGATTATGGAGAAGAAGTGCGAAGATCAGCAGGGTTTAATTAGAAGTGTTGTAGCTGATCTTAAGGAGGCTAAAGAAGAAGCAAGGATTCTTAGAGTTTCCAATAAAGAACTGTCATATGCTTTGTCAAAGGCTAAAGCAGATTTGAATAATGCCCAAGAGAGACAAGTGGTATTGACTGATGAGTATGTCTCGGCTTTGAAGTATGAAAGGACTCTGAGGATTTTATTCAATCGGTTGTCGATTTGTATCAAGCTCACAATAAGTGAGCAAAATGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

39.66

Weight (kDa)

9.05

Isoelectric Point (pI)

53.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	1 cut(s)	611
AclWI	GGATC	2 cut(s)	165, 178
AcsI	RAATTY	2 cut(s)	164, 296
AfeI	AGCGCT	1 cut(s)	618
AfiI	CCNNNNNNNGG	4 cut(s)	60, 167, 253, 446
AflII	CTTAAG	1 cut(s)	821
AgsI	TTSAA	9 cut(s)	142, 383, 503, 579, 709, 758, 907, 961, 991
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	3 cut(s)	90, 815, 1015
AluI	AGCT	3 cut(s)	90, 815, 1015
Alw21I	GWGCWC	3 cut(s)	100, 160, 587
Alw26I	GTCTC	3 cut(s)	285, 916, 955
Alw44I	GTGCAC	2 cut(s)	96, 583
AlwI	GGATC	2 cut(s)	165, 178
Aor13HI	TCCGGA	1 cut(s)	517
Aor51HI	AGCGCT	1 cut(s)	618
AoxI	GGCC	1 cut(s)	35
ApaLI	GTGCAC	2 cut(s)	96, 583
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	2 cut(s)	164, 296
AspLEI	GCGC	2 cut(s)	72, 619
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	1 cut(s)	660
AsuHPI	GGTGA	2 cut(s)	638, 648
AsuNHI	GCTAGC	1 cut(s)	340
BaeGI	GKGCMC	2 cut(s)	100, 587
BamHI	GGATCC	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	3 cut(s)	100, 160, 587
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	5 cut(s)	204, 296, 501, 684, 718
BceAI	ACGGC	1 cut(s)	524
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	660
BcoDI	GTCTC	3 cut(s)	285, 916, 955
BfaI	CTAG	2 cut(s)	341, 357
BfoI	RGCGCY	1 cut(s)	620
BfrI	CTTAAG	1 cut(s)	821
BglII	AGATCT	1 cut(s)	740
BisI	GCNGC	2 cut(s)	612, 615
BlsI	GCNGC	2 cut(s)	613, 616
Bme1390I	CCNGG	2 cut(s)	248, 660
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	4 cut(s)	52, 172, 190, 334
BmrFI	CCNGG	2 cut(s)	248, 660
BmsI	GCATC	2 cut(s)	73, 303
BmtI	GCTAGC	1 cut(s)	344
BoxI	GACNNNNGTC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	216
BplI	GAGNNNNNCTC	4 cut(s)	106, 138, 935, 967
BpuMI	CCSGG	1 cut(s)	660
BsaBI	GATNNNNATC	1 cut(s)	1007
BsaJI	CCNNGG	2 cut(s)	54, 247
BsaWI	WCCGGW	1 cut(s)	517
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 471, 761, 791
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 167, 253, 446
Bse8I	GATNNNNATC	1 cut(s)	1007
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	54, 247
BseGI	GGATG	2 cut(s)	88, 215
BseJI	GATNNNNATC	1 cut(s)	1007
BseLI	CCNNNNNNNGG	4 cut(s)	60, 167, 253, 446
BseMII	CTCAG	1 cut(s)	968
BseRI	GAGGAG	1 cut(s)	504
BseSI	GKGCMC	2 cut(s)	100, 587
BseXI	GCAGC	1 cut(s)	626
BseYI	CCCAGC	1 cut(s)	413
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	50
BsiHKAI	GWGCWC	3 cut(s)	100, 160, 587
BsiSI	CCGG	2 cut(s)	518, 660
BslFI	GGGAC	2 cut(s)	375, 539
BslI	CCNNNNNNNGG	4 cut(s)	60, 167, 253, 446
BsmAI	GTCTC	3 cut(s)	285, 916, 955
BsmFI	GGGAC	2 cut(s)	375, 539
BsnI	GGCC	1 cut(s)	37
Bsp1286I	GDGCHC	3 cut(s)	100, 160, 587
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	5 cut(s)	151, 170, 740, 784, 817
BspACI	CCGC	1 cut(s)	611
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	969
BspEI	TCCGGA	1 cut(s)	517
BspHI	TCATGA	2 cut(s)	427, 568
BspLI	GGNNCC	4 cut(s)	52, 172, 190, 334
BspOI	GCTAGC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	165, 178
BspQI	GCTCTTC	1 cut(s)	121
BspT107I	GGYRCC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	821
BssECI	CCNNGG	2 cut(s)	54, 247
BssMI	GATC	5 cut(s)	151, 170, 740, 784, 817
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	375, 873
Bst6I	CTCTTC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	821
BstC8I	GCNNGC	2 cut(s)	88, 342
BstDEI	CTNAG	2 cut(s)	851, 977
BstF5I	GGATG	2 cut(s)	88, 215
BstH2I	RGCGCY	1 cut(s)	620
BstHHI	GCGC	2 cut(s)	72, 619
BstKTI	GATC	5 cut(s)	154, 173, 743, 787, 820
BstMAI	GTCTC	3 cut(s)	285, 916, 955
BstMBI	GATC	5 cut(s)	151, 170, 740, 784, 817
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNI	CCWGG	1 cut(s)	248
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	246, 658
BstSLI	GKGCMC	2 cut(s)	100, 587
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	170, 740
BstYI	RGATCY	2 cut(s)	170, 740
BsuRI	GGCC	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	88, 215
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	88, 342
CciI	TCATGA	2 cut(s)	427, 568
CfoI	GCGC	2 cut(s)	72, 619
Cfr13I	GGNCC	1 cut(s)	36
CviAII	CATG	3 cut(s)	407, 428, 569
DdeI	CTNAG	2 cut(s)	851, 977
DpnI	GATC	5 cut(s)	153, 172, 742, 786, 819
DpnII	GATC	5 cut(s)	151, 170, 740, 784, 817
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco47III	AGCGCT	1 cut(s)	618
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	410, 431, 572
FalI	AAGNNNNNCTT	2 cut(s)	438, 470
FaqI	GGGAC	2 cut(s)	375, 539
FatI	CATG	3 cut(s)	406, 427, 568
FauNDI	CATATG	2 cut(s)	271, 877
Fnu4HI	GCNGC	2 cut(s)	612, 615
FokI	GGATG	2 cut(s)	95, 222
Fsp4HI	GCNGC	2 cut(s)	612, 615
FspBI	CTAG	2 cut(s)	341, 357
GlaI	GCGC	2 cut(s)	71, 618
GluI	GCNGC	2 cut(s)	612, 615
GsaI	CCCAGC	1 cut(s)	417
HaeII	RGCGCY	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	2 cut(s)	518, 660
HhaI	GCGC	2 cut(s)	72, 619
Hin1II	CATG	3 cut(s)	410, 431, 572
Hin6I	GCGC	2 cut(s)	70, 617
HinP1I	GCGC	2 cut(s)	70, 617
HinfI	GANTC	7 cut(s)	221, 388, 511, 523, 560, 847, 973
HpaII	CCGG	2 cut(s)	518, 660
HphI	GGTGA	2 cut(s)	638, 648
Hpy166II	GTNNAC	2 cut(s)	98, 585
Hpy188I	TCNGA	2 cut(s)	681, 978
Hpy188III	TCNNGA	9 cut(s)	161, 186, 428, 518, 527, 545, 569, 701, 755
Hpy8I	GTNNAC	2 cut(s)	98, 585
HpyAV	CCTTC	5 cut(s)	440, 471, 602, 637, 703
HpyCH4III	ACNGT	2 cut(s)	375, 873
HpyCH4V	TGCA	4 cut(s)	98, 316, 371, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	851, 977
Hsp92II	CATG	3 cut(s)	410, 431, 572
HspAI	GCGC	2 cut(s)	70, 617
Kpn2I	TCCGGA	1 cut(s)	517
Kzo9I	GATC	5 cut(s)	151, 170, 740, 784, 817
LguI	GCTCTTC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	163, 188
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	73, 303
MaeI	CTAG	2 cut(s)	341, 357
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	5 cut(s)	153, 172, 742, 786, 819
MboI	GATC	5 cut(s)	151, 170, 740, 784, 817
MboII	GAAGA	8 cut(s)	138, 216, 560, 689, 733, 784, 794, 848
MfeI	CAATTG	1 cut(s)	175
MflI	RGATCY	2 cut(s)	170, 740
MhlI	GDGCHC	3 cut(s)	100, 160, 587
MluCI	AATT	5 cut(s)	164, 175, 296, 606, 798
MlyI	GAGTC	4 cut(s)	230, 397, 505, 967
MnlI	CCTC	9 cut(s)	49, 73, 132, 200, 525, 642, 658, 820, 972
MroI	TCCGGA	1 cut(s)	517
MseI	TTAA	2 cut(s)	797, 822
MspA1I	CMGCKG	1 cut(s)	90
MspCI	CTTAAG	1 cut(s)	821
MspI	CCGG	2 cut(s)	518, 660
MspR9I	CCNGG	2 cut(s)	248, 660
MunI	CAATTG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	197
NciI	CCSGG	1 cut(s)	660
NdeI	CATATG	2 cut(s)	271, 877
NdeII	GATC	5 cut(s)	151, 170, 740, 784, 817
NheI	GCTAGC	1 cut(s)	340
NlaIII	CATG	3 cut(s)	410, 431, 572
NlaIV	GGNNCC	4 cut(s)	52, 172, 190, 334
NmeAIII	GCCGAG	1 cut(s)	932
PagI	TCATGA	2 cut(s)	427, 568
PciSI	GCTCTTC	1 cut(s)	121
PfeI	GAWTC	3 cut(s)	523, 560, 847
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	2 cut(s)	613, 616
PleI	GAGTC	4 cut(s)	229, 396, 505, 967
PpsI	GAGTC	4 cut(s)	229, 396, 505, 967
PshAI	GACNNNNGTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	4 cut(s)	52, 172, 190, 334
PspPI	GGNCC	1 cut(s)	36
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	170, 740
PvuII	CAGCTG	1 cut(s)	90
SapI	GCTCTTC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	797, 822
SatI	GCNGC	2 cut(s)	612, 615
Sau3AI	GATC	5 cut(s)	151, 170, 740, 784, 817
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	4 cut(s)	230, 397, 505, 967
ScrFI	CCNGG	2 cut(s)	248, 660
SduI	GDGCHC	3 cut(s)	100, 160, 587
SetI	ASST	6 cut(s)	21, 92, 334, 594, 817, 1017
SfaNI	GCATC	2 cut(s)	73, 303
SmlI	CTYRAG	2 cut(s)	10, 821
SmoI	CTYRAG	2 cut(s)	10, 821
Sse9I	AATT	5 cut(s)	164, 175, 296, 606, 798
SsiI	CCGC	1 cut(s)	611
SspMI	CTAG	2 cut(s)	341, 357
StyD4I	CCNGG	2 cut(s)	246, 658
TaaI	ACNGT	2 cut(s)	375, 873
TaqI	TCGA	3 cut(s)	124, 544, 1001
TasI	AATT	5 cut(s)	164, 175, 296, 606, 798
TauI	GCSGC	1 cut(s)	614
TfiI	GAWTC	3 cut(s)	523, 560, 847
Tru1I	TTAA	2 cut(s)	797, 822
Tru9I	TTAA	2 cut(s)	797, 822
TscAI	CASTG	1 cut(s)	592
TseI	GCWGC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	336, 416, 981
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	592
Van91I	CCANNNNNTGG	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	821
VneI	GTGCAC	2 cut(s)	96, 583
XapI	RAATTY	2 cut(s)	164, 296
XspI	CTAG	2 cut(s)	341, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.