Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

19072573 .. 19076416

Gene Structure 3844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAACTTCTACTATCACATCACCTTGGGAAATTGCTCCCTGGTGGAGGCTAAGCAAAATAATCTTGGAGAAGTCATCAAATTAGGCCACAAGAATTTTGTGAGCAAAGAGTTCGAAGAGGAGAGTGAATTGAAGAGACAACTACTAGCGACTCAAGGTGAGTGTCATGAGAAGAAGAGGAAAGTTACTGGTTTAGCCACGAATATGATGAAGAAGCTGGAAAAGCAAACCAAGGAATGCAAAGAGGAAGCTTTGGTGGAAGCTCAAGAAGCTAAAAAAAGAATGAGACTCGAGGAGATTAAGGCACTGTCAAGGATCGCGCCGGTGGCCACCATCTCATATTGCTCGTCCGCCATCCGCTCCGAAGCTTATGGTCGTGAGTCGAGTGTATCAAATGATGATGATACAGATGGAATGAAGATGACCACCACTACTACCACCGCCACTACTTTAACACCGATTGTGATAACTCAAATTCCTGTTACTCTTGGAGCAACTCCTCAAACGGATGGCTCGCAGCCTTTAGATATGAGAACTAAACTTGTTGTGCTTCCTATGAACCCGCTATGCTTTCCTTGCGAAGACAAGTTTTGGTGCTGGGATTTATGCCCAATCGATCTGAAGATGCAACTTGGAGATGGAAGCACCTATGTCTTCTGCGAGACAAGACTTCTCCACCTTTGTAGCTTGCTCTTGGCTTTATTGCTTCTCACTATGAAGAGTTGGAGTGATTTCGAAGGAGTACCCAATACTTACGAGCTTATTTTTTCCACCTTGGGTGTTCAATTTGGCTGCCGCATTTTATCGAACAGGTACAAAGCAAGGACATCAGCTGCAGTCAAAGTTCCAGAGTTTCACATTGAAGCAACACTTCTTGTTGGTTCTCGACAACTTTTAATTAATTTGTTGCACTTTGTTTGGAATCAGGCATATGAGGCTGGAGCAAATTTGGAGCCCAGCATTTTGACGCGTTGCTGGAAACTTGAGAGTAAGCATCATGCTATTGGAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

37.92

Weight (kDa)

7.05

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	360
AccII	CGCG	2 cut(s)	320, 970
AciI	CCGC	5 cut(s)	351, 358, 441, 563, 796
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	3 cut(s)	94, 474, 946
AcuI	CTGAAG	1 cut(s)	641
AfaI	GTAC	2 cut(s)	744, 815
AfiI	CCNNNNNNNGG	1 cut(s)	46
AflIII	ACRYGT	1 cut(s)	968
AgsI	TTSAA	3 cut(s)	133, 785, 863
AjnI	CCWGG	1 cut(s)	39
AluBI	AGCT	8 cut(s)	217, 251, 263, 272, 368, 687, 760, 833
AluI	AGCT	8 cut(s)	217, 251, 263, 272, 368, 687, 760, 833
Alw26I	GTCTC	3 cut(s)	130, 280, 656
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	290
AoxI	GGCC	2 cut(s)	85, 327
ApeKI	GCWGC	3 cut(s)	517, 792, 833
ApoI	RAATTY	3 cut(s)	94, 474, 946
AseI	ATTAAT	1 cut(s)	900
AspLEI	GCGC	1 cut(s)	322
AsuHPI	GGTGA	2 cut(s)	13, 170
AsuII	TTCGAA	2 cut(s)	114, 735
AvaI	CYCGRG	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	957
BbsI	GAAGAC	2 cut(s)	588, 646
BbvI	GCAGC	3 cut(s)	529, 779, 820
BccI	CCATC	5 cut(s)	341, 362, 404, 503, 632
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	130, 280, 656
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	834
BisI	GCNGC	4 cut(s)	518, 793, 796, 834
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	4 cut(s)	519, 794, 797, 835
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	290
BmiI	GGNNCC	1 cut(s)	954
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	2 cut(s)	615, 1003
BpiI	GAAGAC	2 cut(s)	588, 646
BpmI	CTGGAG	1 cut(s)	960
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	2 cut(s)	114, 735
BpuEI	CTTGAG	3 cut(s)	138, 249, 1004
Bsa29I	ATCGAT	1 cut(s)	615
BsaJI	CCNNGG	4 cut(s)	24, 39, 231, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	41
BseCI	ATCGAT	1 cut(s)	615
BseDI	CCNNGG	4 cut(s)	24, 39, 231, 774
BseGI	GGATG	2 cut(s)	354, 514
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	3 cut(s)	134, 308, 489
BseXI	GCAGC	3 cut(s)	529, 779, 820
BseYI	CCCAGC	2 cut(s)	597, 956
Bsh1236I	CGCG	2 cut(s)	320, 970
BshFI	GGCC	2 cut(s)	87, 329
BshVI	ATCGAT	1 cut(s)	615
BsiHKCI	CYCGRG	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	323
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	3 cut(s)	130, 280, 656
BsmI	GAATGC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	87, 329
BsoBI	CYCGRG	1 cut(s)	290
Bsp119I	TTCGAA	2 cut(s)	114, 735
Bsp1286I	GDGCHC	1 cut(s)	957
Bsp143I	GATC	2 cut(s)	315, 616
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	5 cut(s)	351, 358, 441, 563, 796
BspANI	GGCC	2 cut(s)	87, 329
BspDI	ATCGAT	1 cut(s)	615
BspFNI	CGCG	2 cut(s)	320, 970
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	954
BspMAI	CTGCAG	1 cut(s)	838
BspPI	GGATC	1 cut(s)	323
BspT104I	TTCGAA	2 cut(s)	114, 735
BsrBI	CCGCTC	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	322
BssECI	CCNNGG	4 cut(s)	24, 39, 231, 774
BssMI	GATC	2 cut(s)	315, 616
BssT1I	CCWWGG	3 cut(s)	24, 231, 774
Bst2UI	CCWGG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	4 cut(s)	111, 128, 170, 713
BstBI	TTCGAA	2 cut(s)	114, 735
BstC8I	GCNNGC	2 cut(s)	515, 689
BstDEI	CTNAG	1 cut(s)	51
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	354, 514
BstFNI	CGCG	2 cut(s)	320, 970
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	2 cut(s)	318, 619
BstMAI	GTCTC	3 cut(s)	130, 280, 656
BstMBI	GATC	2 cut(s)	315, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	223, 269, 326, 576, 935
BstNI	CCWGG	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	2 cut(s)	320, 970
BstV1I	GCAGC	3 cut(s)	529, 779, 820
BstV2I	GAAGAC	2 cut(s)	588, 646
Bsu15I	ATCGAT	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	87, 329
BsuTUI	ATCGAT	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	354, 514
BtsIMutI	CAGTG	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	515, 689
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	322
ClaI	ATCGAT	1 cut(s)	615
CseI	GACGC	1 cut(s)	976
Csp6I	GTAC	2 cut(s)	743, 814
CviAII	CATG	2 cut(s)	167, 998
CviQI	GTAC	2 cut(s)	743, 814
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	317, 618
DpnII	GATC	2 cut(s)	315, 616
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	4 cut(s)	111, 128, 170, 713
EarI	CTCTTC	4 cut(s)	111, 128, 170, 713
EciI	GGCGGA	1 cut(s)	340
Eco130I	CCWWGG	3 cut(s)	24, 231, 774
Eco24I	GRGCYC	1 cut(s)	957
Eco57I	CTGAAG	1 cut(s)	641
Eco88I	CYCGRG	1 cut(s)	290
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	3 cut(s)	24, 231, 774
EcoT38I	GRGCYC	1 cut(s)	957
ErhI	CCWWGG	3 cut(s)	24, 231, 774
FaeI	CATG	2 cut(s)	170, 1001
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FatI	CATG	2 cut(s)	166, 997
FauI	CCCGC	1 cut(s)	570
FauNDI	CATATG	1 cut(s)	931
Fnu4HI	GCNGC	4 cut(s)	518, 793, 796, 834
FokI	GGATG	2 cut(s)	341, 521
FriOI	GRGCYC	1 cut(s)	957
Fsp4HI	GCNGC	4 cut(s)	518, 793, 796, 834
FspBI	CTAG	1 cut(s)	146
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	4 cut(s)	518, 793, 796, 834
GsaI	CCCAGC	2 cut(s)	601, 960
GsuI	CTGGAG	1 cut(s)	960
HaeIII	GGCC	2 cut(s)	87, 329
HapII	CCGG	1 cut(s)	323
HgaI	GACGC	1 cut(s)	976
HhaI	GCGC	1 cut(s)	322
Hin1II	CATG	2 cut(s)	170, 1001
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HindIII	AAGCTT	2 cut(s)	249, 366
HinfI	GANTC	4 cut(s)	151, 288, 380, 922
HpaII	CCGG	1 cut(s)	323
HphI	GGTGA	2 cut(s)	13, 170
Hpy188I	TCNGA	2 cut(s)	364, 621
Hpy188III	TCNNGA	5 cut(s)	167, 266, 377, 848, 885
HpyAV	CCTTC	1 cut(s)	731
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	240, 628, 836, 910
HpyF10VI	GCNNNNNNNGC	5 cut(s)	223, 269, 326, 576, 935
HpyF3I	CTNAG	1 cut(s)	51
Hsp92II	CATG	2 cut(s)	170, 1001
HspAI	GCGC	1 cut(s)	320
Kzo9I	GATC	2 cut(s)	315, 616
LmnI	GCTCC	5 cut(s)	41, 365, 491, 941, 952
Lsp1109I	GCAGC	3 cut(s)	529, 779, 820
LweI	GCATC	2 cut(s)	615, 1003
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	184, 481
MalI	GATC	2 cut(s)	317, 618
MbiI	CCGCTC	1 cut(s)	360
MboI	GATC	2 cut(s)	315, 616
MhlI	GDGCHC	1 cut(s)	957
MlsI	TGGCCA	1 cut(s)	329
MluCI	AATT	9 cut(s)	31, 80, 94, 128, 474, 785, 897, 901, 946
MluI	ACGCGT	1 cut(s)	968
MluNI	TGGCCA	1 cut(s)	329
MlyI	GAGTC	3 cut(s)	145, 282, 389
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	7 cut(s)	40, 112, 171, 238, 286, 510, 928
Mox20I	TGGCCA	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	329
MseI	TTAA	4 cut(s)	300, 452, 896, 900
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	833
MspI	CCGG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	41
MvnI	CGCG	2 cut(s)	320, 970
MwoI	GCNNNNNNNGC	5 cut(s)	223, 269, 326, 576, 935
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	2 cut(s)	315, 616
NlaIII	CATG	2 cut(s)	170, 1001
NlaIV	GGNNCC	1 cut(s)	954
NspV	TTCGAA	2 cut(s)	114, 735
PacI	TTAATTAA	1 cut(s)	900
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	1 cut(s)	166
PctI	GAATGC	1 cut(s)	242
PfeI	GAWTC	1 cut(s)	922
PkrI	GCNGC	4 cut(s)	519, 794, 797, 835
PleI	GAGTC	3 cut(s)	145, 282, 388
PpsI	GAGTC	3 cut(s)	145, 282, 388
PshBI	ATTAAT	1 cut(s)	900
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	2 cut(s)	597, 956
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	954
PspXI	VCTCGAGB	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	838
PvuII	CAGCTG	1 cut(s)	833
RsaI	GTAC	2 cut(s)	744, 815
RsaNI	GTAC	2 cut(s)	743, 814
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	300, 452, 896, 900
SatI	GCNGC	4 cut(s)	518, 793, 796, 834
Sau3AI	GATC	2 cut(s)	315, 616
SchI	GAGTC	3 cut(s)	145, 282, 389
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	957
SfaNI	GCATC	2 cut(s)	615, 1003
SfcI	CTRYAG	1 cut(s)	834
Sfr274I	CTCGAG	1 cut(s)	290
SfuI	TTCGAA	2 cut(s)	114, 735
SgrAI	CRCCGGYG	1 cut(s)	322
SlaI	CTCGAG	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	203
SmlI	CTYRAG	4 cut(s)	153, 264, 290, 983
SmoI	CTYRAG	4 cut(s)	153, 264, 290, 983
Sse9I	AATT	9 cut(s)	31, 80, 94, 128, 474, 785, 897, 901, 946
SsiI	CCGC	5 cut(s)	351, 358, 441, 563, 796
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	39
StyI	CCWWGG	3 cut(s)	24, 231, 774
TaaI	ACNGT	1 cut(s)	309
TaqI	TCGA	7 cut(s)	114, 291, 383, 615, 735, 806, 886
TasI	AATT	9 cut(s)	31, 80, 94, 128, 474, 785, 897, 901, 946
TauI	GCSGC	1 cut(s)	798
TfiI	GAWTC	1 cut(s)	922
Tru1I	TTAA	4 cut(s)	300, 452, 896, 900
Tru9I	TTAA	4 cut(s)	300, 452, 896, 900
TscAI	CASTG	1 cut(s)	312
TseI	GCWGC	3 cut(s)	517, 792, 833
TspDTI	ATGAA	5 cut(s)	17, 224, 431, 572, 731
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	312
VspI	ATTAAT	1 cut(s)	900
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	3 cut(s)	94, 474, 946
XhoI	CTCGAG	1 cut(s)	290
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.