Rh4DG101000

Cytosolic purine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002036
Physical Location & Seq
Reverse (-)
15310529 .. 15310936
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG101000.1

Sequence Viewer

Length: 408 bp
ATGGAAATTAATCCGCCAGAGAAATCGATGACCACAGAAGAAATTAAGGAAATTAGAGAACAGTATTGTATCCCGGATACCTTCGGGCTTCGTTCGCTGAGGAATGGTGGGTTTGTGCGTGATCCACCTGAGGGTCACATAGCGCACTCTTTGTGCGTGATCCACCTGATCCACCATGCGCAAGTGAAGATGGGTCTGCATCTTCCACTAGACCCCTTTATGCAGCGCACTCTTTCCGGGTTGAAAGTTGTTGTCGGGCAGGTTTCGCCTATCATGCTACGAGTGCTGCAAACTTTCCATGTAGTATGGCGAGTTTGTGGGTTAGGATTTCCCACCAGAGCTGAAGTGATGTACTATTACGCTCTGCAATATTCCCGAAGCAGAAGTGTTCTGGGACTTTTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
5_nucleotid

Protein Analysis

135

Amino Acids

15.41

Weight (kDa)

8.91

Isoelectric Point (pI)

60.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 250
AciI CCGC 1 cut(s) 14
AclWI GGATC 3 cut(s) 116, 154, 163
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 244
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
AlwI GGATC 3 cut(s) 116, 154, 163
ApeKI GCWGC 2 cut(s) 223, 286
AseI ATTAAT 1 cut(s) 9
AspLEI GCGC 3 cut(s) 145, 181, 228
AsuC2I CCSGG 2 cut(s) 74, 238
AxyI CCTNAGG 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 2 cut(s) 235, 273
BccI CCATC 1 cut(s) 184
BciVI GTATCC 2 cut(s) 70, 80
BcnI CCSGG 2 cut(s) 74, 238
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 250
BfuI GTATCC 2 cut(s) 70, 80
BisI GCNGC 2 cut(s) 224, 287
BlsI GCNGC 2 cut(s) 225, 288
Bme1390I CCNGG 2 cut(s) 74, 238
BmrFI CCNGG 2 cut(s) 74, 238
BmsI GCATC 1 cut(s) 208
Bpu10I CCTNAGC 1 cut(s) 98
BpuMI CCSGG 2 cut(s) 74, 238
Bsa29I ATCGAT 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse21I CCTNAGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 89, 120
BseXI GCAGC 2 cut(s) 235, 273
BshVI ATCGAT 1 cut(s) 26
BsiSI CCGG 2 cut(s) 74, 237
BslI CCNNNNNNNGG 1 cut(s) 131
Bsp143I GATC 3 cut(s) 121, 159, 168
BspACI CCGC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 90, 121
BspDI ATCGAT 1 cut(s) 26
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 3 cut(s) 116, 154, 163
BssMI GATC 3 cut(s) 121, 159, 168
Bst4CI ACNGT 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 98, 129
BstHHI GCGC 3 cut(s) 145, 181, 228
BstKTI GATC 3 cut(s) 124, 162, 171
BstMBI GATC 3 cut(s) 121, 159, 168
BstMWI GCNNNNNNNGC 4 cut(s) 94, 265, 274, 283
BstSCI CCNGG 2 cut(s) 72, 236
BstV1I GCAGC 2 cut(s) 235, 273
Bsu15I ATCGAT 1 cut(s) 26
Bsu36I CCTNAGG 1 cut(s) 129
BsuI GTATCC 2 cut(s) 70, 80
BsuTUI ATCGAT 1 cut(s) 26
BveI ACCTGC 1 cut(s) 250
CfoI GCGC 3 cut(s) 145, 181, 228
ClaI ATCGAT 1 cut(s) 26
Csp6I GTAC 1 cut(s) 352
CviAII CATG 3 cut(s) 176, 274, 299
CviJI RGCY 2 cut(s) 88, 341
CviKI_1 RGCY 2 cut(s) 88, 341
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 98, 129
DpnI GATC 3 cut(s) 123, 161, 170
DpnII GATC 3 cut(s) 121, 159, 168
Eco57I CTGAAG 1 cut(s) 363
Eco81I CCTNAGG 1 cut(s) 129
FaeI CATG 3 cut(s) 179, 277, 302
FaiI YATR 6 cut(s) 140, 177, 221, 275, 300, 307
FatI CATG 3 cut(s) 175, 273, 298
Fnu4HI GCNGC 2 cut(s) 224, 287
Fsp4HI GCNGC 2 cut(s) 224, 287
FspBI CTAG 1 cut(s) 209
FspI TGCGCA 1 cut(s) 180
GlaI GCGC 3 cut(s) 144, 180, 227
GluI GCNGC 2 cut(s) 224, 287
HapII CCGG 2 cut(s) 74, 237
HhaI GCGC 3 cut(s) 145, 181, 228
Hin1II CATG 3 cut(s) 179, 277, 302
Hin6I GCGC 3 cut(s) 143, 179, 226
HinP1I GCGC 3 cut(s) 143, 179, 226
HpaII CCGG 2 cut(s) 74, 237
Hpy188I TCNGA 1 cut(s) 407
Hpy188III TCNNGA 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 4 cut(s) 199, 223, 289, 367
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 265, 274, 283
HpyF3I CTNAG 2 cut(s) 98, 129
Hsp92II CATG 3 cut(s) 179, 277, 302
HspAI GCGC 3 cut(s) 143, 179, 226
Kzo9I GATC 3 cut(s) 121, 159, 168
LpnPI CCDG 8 cut(s) 30, 87, 141, 179, 245, 250, 349, 377
Lsp1109I GCAGC 2 cut(s) 235, 273
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 134
MalI GATC 3 cut(s) 123, 161, 170
MboI GATC 3 cut(s) 121, 159, 168
MboII GAAGA 3 cut(s) 50, 194, 199
MluCI AATT 3 cut(s) 6, 42, 51
MnlI CCTC 2 cut(s) 93, 124
MseI TTAA 3 cut(s) 9, 45, 401
MspI CCGG 2 cut(s) 74, 237
MspR9I CCNGG 2 cut(s) 74, 238
MwoI GCNNNNNNNGC 4 cut(s) 94, 265, 274, 283
NciI CCSGG 2 cut(s) 74, 238
NdeII GATC 3 cut(s) 121, 159, 168
NlaIII CATG 3 cut(s) 179, 277, 302
NmuCI GTSAC 1 cut(s) 134
NsbI TGCGCA 1 cut(s) 180
PfoI TCCNGGA 1 cut(s) 72
PkrI GCNGC 2 cut(s) 225, 288
PshBI ATTAAT 1 cut(s) 9
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 9, 45, 401
SatI GCNGC 2 cut(s) 224, 287
Sau3AI GATC 3 cut(s) 121, 159, 168
ScrFI CCNGG 2 cut(s) 74, 238
SetI ASST 5 cut(s) 83, 130, 168, 264, 343
SfaNI GCATC 1 cut(s) 208
Sse9I AATT 3 cut(s) 6, 42, 51
SsiI CCGC 1 cut(s) 14
SspI AATATT 1 cut(s) 371
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 72, 236
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 1 cut(s) 26
TasI AATT 3 cut(s) 6, 42, 51
TatI WGTACW 1 cut(s) 351
Tru1I TTAA 3 cut(s) 9, 45, 401
Tru9I TTAA 3 cut(s) 9, 45, 401
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 223, 286
Tsp45I GTSAC 1 cut(s) 134
VspI ATTAAT 1 cut(s) 9
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.