Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

47104872 .. 47106119

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009125

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGACCATAGAAGAAATTAAGGAAATTAGAGAACAGTATTATATCCAAGATACCTTCGGGCTTCGTTTGCTGAGGCATGGTGGGTTTGTGCATGATCTATCTGAGGGTCACATAACTATCCACCATGCGCAAGTGAAGATGGGTCTGCATCTTCCACTGGACCCCTTTATGCAGCGTACTCTTTTGGGGTTGAAAGTTGCTGTCGGGCAGTCTACTCATTTCTCGTATTTGGCAGAGGACTTATATTATCCACTGTGTGATCGGGAATTGGGGCACTTGAAGCGGATTGAATACACGGTCAAGGAAAAAGGTCCATTCAATATAACCACGTTAACGTGTTGGGAAGCACTTATCCGGTGCAGCATTACCCCTAGGCCAATTCGCATAGATAATGATATTACACAACAAAAAATTAATAGGATGCCTGGGAATCCTATGGAATGGTTGGCATCGTTGGACCTTGTATCCACTGATGCCGGGAAGGTGGTGATGGATGATGCGACCCGAGATATCAAGCGGCCTATGTCCGCAGATCTGAAGGATCTAATTCTGGAGGAGGCCATGAAAAGGCATAATACGAAGAAGAAAAAGACTGTGACTATGCCTGCGATCGAGGAGAACTCCGCGGAAGTGGATGAAGAAGAGGTGGGGGAAGAAGAGAATGAAGAGGAGGATGAAGAGGCATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

26.35

Weight (kDa)

5.05

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	129
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	626
AciI	CCGC	5 cut(s)	283, 517, 528, 624, 626
AclWI	GGATC	1 cut(s)	549
AcuI	CTGAAG	1 cut(s)	557
AdeI	CACNNNGTG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	567
AflIII	ACRYGT	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	193, 280, 290, 319
AjnI	CCWGG	1 cut(s)	424
AlwI	GGATC	1 cut(s)	549
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	3 cut(s)	374, 518, 558
ApeKI	GCWGC	2 cut(s)	172, 360
AseI	ATTAAT	1 cut(s)	414
AspA2I	CCTAGG	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	3 cut(s)	160, 311, 457
AsuC2I	CCSGG	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	499
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	3 cut(s)	160, 311, 457
AvrII	CCTAGG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	184, 372
BccI	CCATC	2 cut(s)	133, 484
BciT130I	CCWGG	1 cut(s)	426
BciVI	GTATCC	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	478
BfaI	CTAG	2 cut(s)	372, 688
BfuI	GTATCC	1 cut(s)	475
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	3 cut(s)	173, 361, 518
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	3 cut(s)	174, 362, 519
Bme1390I	CCNGG	2 cut(s)	426, 478
Bme18I	GGWCC	3 cut(s)	160, 311, 457
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	160, 311, 457
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	2 cut(s)	426, 478
BmsI	GCATC	5 cut(s)	157, 411, 458, 463, 487
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpmI	CTGGAG	1 cut(s)	572
Bpu10I	CCTNAGC	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	371, 425, 624
BsaWI	WCCGGW	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	567
Bse1I	ACTGG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	371, 425, 624
BseGI	GGATG	4 cut(s)	426, 499, 640, 679
BseLI	CCNNNNNNNGG	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	62, 93
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	3 cut(s)	569, 629, 683
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	2 cut(s)	184, 372
BsgI	GTGCAG	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	626
Bsh1285I	CGRYCG	1 cut(s)	612
BshFI	GGCC	3 cut(s)	376, 520, 560
BsiEI	CGRYCG	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	355, 477
BslI	CCNNNNNNNGG	1 cut(s)	567
BsnI	GGCC	3 cut(s)	376, 520, 560
BsoBI	CYCGRG	1 cut(s)	504
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	5 cut(s)	94, 259, 532, 541, 609
BspACI	CCGC	5 cut(s)	283, 517, 528, 624, 626
BspANI	GGCC	3 cut(s)	376, 520, 560
BspCNI	CTCAG	2 cut(s)	63, 94
BspFNI	CGCG	1 cut(s)	626
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	3 cut(s)	371, 425, 624
BssMI	GATC	5 cut(s)	94, 259, 532, 541, 609
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	4 cut(s)	36, 255, 298, 595
Bst6I	CTCTTC	4 cut(s)	636, 651, 660, 672
BstC8I	GCNNGC	2 cut(s)	606, 685
BstDEI	CTNAG	2 cut(s)	71, 102
BstDSI	CCRYGG	1 cut(s)	624
BstF5I	GGATG	4 cut(s)	426, 499, 640, 679
BstFNI	CGCG	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	5 cut(s)	97, 262, 535, 544, 612
BstMBI	GATC	5 cut(s)	94, 259, 532, 541, 609
BstMCI	CGRYCG	1 cut(s)	612
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 280
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	2 cut(s)	424, 476
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	2 cut(s)	184, 372
BstX2I	RGATCY	2 cut(s)	532, 541
BstYI	RGATCY	2 cut(s)	532, 541
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	376, 520, 560
BtgI	CCRYGG	1 cut(s)	624
BtsCI	GGATG	4 cut(s)	426, 499, 640, 679
BtsIMutI	CAGTG	3 cut(s)	155, 251, 468
Cac8I	GCNNGC	2 cut(s)	606, 685
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	3 cut(s)	160, 311, 457
Cfr42I	CCGCGG	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	5 cut(s)	77, 92, 125, 562, 684
CviJI	RGCY	4 cut(s)	61, 376, 520, 560
CviKI_1	RGCY	4 cut(s)	61, 376, 520, 560
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	2 cut(s)	71, 102
DpnI	GATC	5 cut(s)	96, 261, 534, 543, 611
DpnII	GATC	5 cut(s)	94, 259, 532, 541, 609
DraIII	CACNNNGTG	1 cut(s)	257
Eam1104I	CTCTTC	4 cut(s)	636, 651, 660, 672
EarI	CTCTTC	4 cut(s)	636, 651, 660, 672
Eco130I	CCWWGG	1 cut(s)	371
Eco32I	GATATC	1 cut(s)	511
Eco47I	GGWCC	3 cut(s)	160, 311, 457
Eco57I	CTGAAG	1 cut(s)	557
Eco88I	CYCGRG	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	424
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	5 cut(s)	80, 95, 128, 565, 687
FatI	CATG	5 cut(s)	76, 91, 124, 561, 683
FblI	GTMKAC	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	173, 361, 518
FokI	GGATG	4 cut(s)	433, 506, 647, 686
Fsp4HI	GCNGC	3 cut(s)	173, 361, 518
FspBI	CTAG	2 cut(s)	372, 688
FspI	TGCGCA	1 cut(s)	129
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	3 cut(s)	173, 361, 518
GsuI	CTGGAG	1 cut(s)	572
HaeIII	GGCC	3 cut(s)	376, 520, 560
HapII	CCGG	2 cut(s)	355, 477
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	5 cut(s)	80, 95, 128, 565, 687
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	430
HpaI	GTTAAC	1 cut(s)	333
HpaII	CCGG	2 cut(s)	355, 477
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	213, 333
Hpy188I	TCNGA	2 cut(s)	103, 537
Hpy188III	TCNNGA	2 cut(s)	263, 551
Hpy8I	GTNNAC	2 cut(s)	213, 333
HpyAV	CCTTC	3 cut(s)	64, 475, 532
HpyCH4III	ACNGT	4 cut(s)	36, 255, 298, 595
HpyCH4IV	ACGT	2 cut(s)	329, 335
HpyCH4V	TGCA	4 cut(s)	91, 148, 172, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 280
HpyF3I	CTNAG	2 cut(s)	71, 102
HpySE526I	ACGT	2 cut(s)	329, 335
Hsp92II	CATG	5 cut(s)	80, 95, 128, 565, 687
HspAI	GCGC	1 cut(s)	128
KspAI	GTTAAC	1 cut(s)	333
KspI	CCGCGG	1 cut(s)	627
Kzo9I	GATC	5 cut(s)	94, 259, 532, 541, 609
LpnPI	CCDG	7 cut(s)	143, 368, 411, 438, 490, 536, 618
Lsp1109I	GCAGC	2 cut(s)	184, 372
LweI	GCATC	5 cut(s)	157, 411, 458, 463, 487
MaeI	CTAG	2 cut(s)	372, 688
MaeII	ACGT	2 cut(s)	329, 335
MaeIII	GTNAC	2 cut(s)	107, 595
MalI	GATC	5 cut(s)	96, 261, 534, 543, 611
MboI	GATC	5 cut(s)	94, 259, 532, 541, 609
MflI	RGATCY	2 cut(s)	532, 541
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	6 cut(s)	15, 24, 266, 378, 411, 546
MmeI	TCCRAC	1 cut(s)	435
MseI	TTAA	3 cut(s)	18, 332, 414
MspA1I	CMGCKG	1 cut(s)	626
MspI	CCGG	2 cut(s)	355, 477
MspR9I	CCNGG	2 cut(s)	426, 478
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	67, 280
NciI	CCSGG	1 cut(s)	478
NdeII	GATC	5 cut(s)	94, 259, 532, 541, 609
NlaIII	CATG	5 cut(s)	80, 95, 128, 565, 687
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	107, 595
NsbI	TGCGCA	1 cut(s)	129
NspI	RCATGY	1 cut(s)	687
PaeI	GCATGC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	174, 362, 519
Ple19I	CGATCG	1 cut(s)	612
PshBI	ATTAAT	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	3 cut(s)	160, 311, 457
PsuI	RGATCY	2 cut(s)	532, 541
PvuI	CGATCG	1 cut(s)	612
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
SacII	CCGCGG	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	18, 332, 414
SatI	GCNGC	3 cut(s)	173, 361, 518
Sau3AI	GATC	5 cut(s)	94, 259, 532, 541, 609
Sau96I	GGNCC	3 cut(s)	160, 311, 457
ScrFI	CCNGG	2 cut(s)	426, 478
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	7 cut(s)	56, 313, 332, 338, 462, 486, 648
SfaNI	GCATC	5 cut(s)	157, 411, 458, 463, 487
Sfr303I	CCGCGG	1 cut(s)	627
SgrBI	CCGCGG	1 cut(s)	627
SinI	GGWCC	3 cut(s)	160, 311, 457
SphI	GCATGC	1 cut(s)	687
Sse9I	AATT	6 cut(s)	15, 24, 266, 378, 411, 546
SsiI	CCGC	5 cut(s)	283, 517, 528, 624, 626
SspMI	CTAG	2 cut(s)	372, 688
StyD4I	CCNGG	2 cut(s)	424, 476
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	4 cut(s)	36, 255, 298, 595
TaiI	ACGT	2 cut(s)	332, 338
TaqI	TCGA	1 cut(s)	612
TasI	AATT	6 cut(s)	15, 24, 266, 378, 411, 546
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	3 cut(s)	18, 332, 414
Tru9I	TTAA	3 cut(s)	18, 332, 414
TscAI	CASTG	3 cut(s)	162, 258, 475
TseFI	GTSAC	2 cut(s)	107, 595
TseI	GCWGC	2 cut(s)	172, 360
Tsp45I	GTSAC	2 cut(s)	107, 595
TspDTI	ATGAA	4 cut(s)	578, 651, 678, 690
TspRI	CASTG	3 cut(s)	162, 258, 475
VpaK11BI	GGWCC	3 cut(s)	160, 311, 457
VspI	ATTAAT	1 cut(s)	414
XceI	RCATGY	1 cut(s)	687
XmaJI	CCTAGG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	2 cut(s)	372, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.