Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Reverse (-)

39071232 .. 39074069

Gene Structure 2838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029463

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGACACGTGGGGTGATCGTGGGTGTTGTCTTAGTAACAACGGTAGCGCGCCTCAGAACTCTCAGTGGAAGCCACAGAGTCCAAGTGCTTTAAACGAAGAAAGGCGTGCGAGAGCTATTGAGTCCGAGAGTTCTTCGAATCGCCCAAAGGAGGAAGTAGATGTAGAAGGTTCTGAAGAGGGTGACGTTTATGCTAGTATCGAAGTCATAGATCACCTTGAGAATGATATGGAAATTAATTCACTGGAGGATCAAAGGGATGAAAGTATAGTACTATATTCCGAACACGGTGAGGCTTTGTCTGTTGGGAAGGGTGAGTCCACACATTATCTGCTGGAGGGTCACATAGCTATTCACCATGCGCGCACACCACGCTTGTATCTTCCATTGGATCTCTTTATGCAGTGCACCCTTCTCTGGGTTGAAAGTTGTTGTGGGTATTCCCAGAAGGATAAGTGTTTTGGGACCTTCAGTCTGACCGCTCGTAAGGATGTCATGAGGGATCATAGGCTTTTCATAGATGCACCCAATTCGACCACCAAGTGGTGTATGACCATGTACCTTGCATATGGAGAGTGGAAGAGAGATAAGGATAACACCACTGACCAATATTGCTATAATAGCGTGCTACAGAGGGTGTCGAGGATCGCATTGACTGCTTTAGGCAGACAAATCTGGTTTCTACTCGGCGACTTGAAGAGAGAGATCGCTTCTAGGCCAAAGGATTACCGTCGTCGACGTCTCTGGTTCAGAGATTGCCGTTGTTTCTCTAGTTTTGTTGGAAAAGTTTGGCAGTTTGTAGGGGTGCTCCAGAGTGAGTTTTGCCGAGTTGATTCTAACACCAGTGCTGATGGACACGGTCTGTGGGCAAGGATAGCCGCCAAAAGGTTGGATGGCAGTGGTACAAATGGTGGAGGCAAGTTCTGGGCTGATGAATACCATGGCAGCGGTGGAGATGTAGGAGGCCATCTGCTGGTCACAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.23

Weight (kDa)

5.84

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	742
AccB7I	CCANNNNNTGG	2 cut(s)	543, 973
AccBSI	CCGCTC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	736
AccII	CGCG	2 cut(s)	50, 364
AciI	CCGC	3 cut(s)	480, 879, 948
AclWI	GGATC	4 cut(s)	258, 399, 510, 653
AcuI	CTGAAG	2 cut(s)	195, 454
AcvI	CACGTG	1 cut(s)	9
AcyI	GRCGYC	1 cut(s)	739
AdeI	CACNNNGTG	1 cut(s)	543
AfaI	GTAC	3 cut(s)	273, 560, 904
AfiI	CCNNNNNNNGG	6 cut(s)	151, 417, 418, 543, 885, 973
AflIII	ACRYGT	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	425, 697
AhdI	GACNNNNNGTC	1 cut(s)	471
AluBI	AGCT	2 cut(s)	116, 350
AluI	AGCT	2 cut(s)	116, 350
Alw21I	GWGCWC	2 cut(s)	410, 810
Alw26I	GTCTC	1 cut(s)	746
Alw44I	GTGCAC	1 cut(s)	406
AlwI	GGATC	4 cut(s)	258, 399, 510, 653
AoxI	GGCC	2 cut(s)	716, 964
ApaLI	GTGCAC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	945
AseI	ATTAAT	1 cut(s)	237
AspLEI	GCGC	4 cut(s)	50, 52, 364, 366
AspS9I	GGNCC	1 cut(s)	465
AsuHPI	GGTGA	6 cut(s)	26, 194, 206, 302, 326, 347
AsuII	TTCGAA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	465
BaeGI	GKGCMC	1 cut(s)	410
BaeI	ACNNNNGTAYC	2 cut(s)	362, 395
BbrPI	CACGTG	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	410, 810
BbvI	GCAGC	1 cut(s)	957
BccI	CCATC	3 cut(s)	845, 887, 975
BceAI	ACGGC	1 cut(s)	744
BcgI	CGANNNNNNTGC	2 cut(s)	513, 547
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	3 cut(s)	195, 714, 771
BfmI	CTRYAG	1 cut(s)	629
BisI	GCNGC	2 cut(s)	879, 946
BlsI	GCNGC	2 cut(s)	880, 947
BmcAI	AGTACT	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	465
BmeRI	GACNNNNNGTC	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	1 cut(s)	511
BpmI	CTGGAG	3 cut(s)	266, 356, 794
Bpu14I	TTCGAA	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	239
BsaAI	YACGTR	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	739
BsaJI	CCNNGG	1 cut(s)	940
Bsc4I	CCNNNNNNNGG	6 cut(s)	151, 417, 418, 543, 885, 973
Bse1I	ACTGG	2 cut(s)	249, 843
BseDI	CCNNGG	1 cut(s)	940
BseGI	GGATG	3 cut(s)	265, 496, 898
BseLI	CCNNNNNNNGG	6 cut(s)	151, 417, 418, 543, 885, 973
BseMII	CTCAG	2 cut(s)	68, 77
BseNI	ACTGG	2 cut(s)	249, 843
BsePI	GCGCGC	2 cut(s)	48, 362
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	957
Bsh1236I	CGCG	2 cut(s)	50, 364
BshFI	GGCC	2 cut(s)	718, 966
BsiHKAI	GWGCWC	2 cut(s)	410, 810
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	6 cut(s)	151, 417, 418, 543, 885, 973
BsmAI	GTCTC	1 cut(s)	746
BsmBI	CGTCTC	1 cut(s)	746
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	718, 966
Bsp119I	TTCGAA	1 cut(s)	137
Bsp1286I	GDGCHC	2 cut(s)	410, 810
Bsp143I	GATC	7 cut(s)	16, 211, 250, 391, 502, 645, 705
Bsp19I	CCATGG	1 cut(s)	940
BspACI	CCGC	3 cut(s)	480, 879, 948
BspANI	GGCC	2 cut(s)	718, 966
BspCNI	CTCAG	2 cut(s)	67, 76
BspFNI	CGCG	2 cut(s)	50, 364
BspHI	TCATGA	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	466
BspPI	GGATC	4 cut(s)	258, 399, 510, 653
BspT104I	TTCGAA	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	482
BsrI	ACTGG	2 cut(s)	249, 843
BssECI	CCNNGG	1 cut(s)	940
BssHII	GCGCGC	2 cut(s)	48, 362
BssMI	GATC	7 cut(s)	16, 211, 250, 391, 502, 645, 705
BssNI	GRCGYC	1 cut(s)	739
BssT1I	CCWWGG	1 cut(s)	940
Bst4CI	ACNGT	5 cut(s)	44, 290, 731, 860, 982
Bst6I	CTCTTC	3 cut(s)	171, 575, 692
BstACI	GRCGYC	1 cut(s)	739
BstAPI	GCANNNNNTGC	1 cut(s)	656
BstBAI	YACGTR	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	137
BstC8I	GCNNGC	4 cut(s)	50, 108, 364, 626
BstDEI	CTNAG	3 cut(s)	32, 54, 63
BstDSI	CCRYGG	1 cut(s)	940
BstF5I	GGATG	3 cut(s)	265, 496, 898
BstFNI	CGCG	2 cut(s)	50, 364
BstHHI	GCGC	4 cut(s)	50, 52, 364, 366
BstKTI	GATC	7 cut(s)	19, 214, 253, 394, 505, 648, 708
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	7 cut(s)	16, 211, 250, 391, 502, 645, 705
BstMWI	GCNNNNNNNGC	4 cut(s)	372, 621, 656, 875
BstSFI	CTRYAG	1 cut(s)	629
BstSLI	GKGCMC	1 cut(s)	410
BstUI	CGCG	2 cut(s)	50, 364
BstV1I	GCAGC	1 cut(s)	957
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	889
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	718, 966
BtgI	CCRYGG	1 cut(s)	940
BtsCI	GGATG	3 cut(s)	265, 496, 898
BtsI	GCAGTG	2 cut(s)	410, 904
BtsIMutI	CAGTG	6 cut(s)	71, 242, 410, 600, 850, 904
Cac8I	GCNNGC	4 cut(s)	50, 108, 364, 626
CciI	TCATGA	1 cut(s)	495
CfoI	GCGC	4 cut(s)	50, 52, 364, 366
Cfr13I	GGNCC	1 cut(s)	465
Csp6I	GTAC	3 cut(s)	272, 559, 903
CviAII	CATG	4 cut(s)	359, 496, 556, 941
CviJI	RGCY	9 cut(s)	73, 116, 296, 350, 511, 718, 878, 929, 966
CviKI_1	RGCY	9 cut(s)	73, 116, 296, 350, 511, 718, 878, 929, 966
CviQI	GTAC	3 cut(s)	272, 559, 903
DdeI	CTNAG	3 cut(s)	32, 54, 63
DpnI	GATC	7 cut(s)	18, 213, 252, 393, 504, 647, 707
DpnII	GATC	7 cut(s)	16, 211, 250, 391, 502, 645, 705
DraI	TTTAAA	1 cut(s)	93
DraIII	CACNNNGTG	1 cut(s)	543
DriI	GACNNNNNGTC	1 cut(s)	471
Eam1104I	CTCTTC	3 cut(s)	171, 575, 692
Eam1105I	GACNNNNNGTC	1 cut(s)	471
EarI	CTCTTC	3 cut(s)	171, 575, 692
Eco130I	CCWWGG	1 cut(s)	940
Eco47I	GGWCC	1 cut(s)	465
Eco57I	CTGAAG	2 cut(s)	195, 454
Eco72I	CACGTG	1 cut(s)	9
EcoO109I	RGGNCCY	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	940
ErhI	CCWWGG	1 cut(s)	940
Esp3I	CGTCTC	1 cut(s)	746
FaeI	CATG	4 cut(s)	362, 499, 559, 944
FaqI	GGGAC	1 cut(s)	478
FatI	CATG	4 cut(s)	358, 495, 555, 940
FauNDI	CATATG	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	736
Fnu4HI	GCNGC	2 cut(s)	879, 946
FokI	GGATG	3 cut(s)	272, 503, 905
Fsp4HI	GCNGC	2 cut(s)	879, 946
FspBI	CTAG	3 cut(s)	195, 714, 771
GlaI	GCGC	4 cut(s)	49, 51, 363, 365
GluI	GCNGC	2 cut(s)	879, 946
GsuI	CTGGAG	3 cut(s)	266, 356, 794
HaeIII	GGCC	2 cut(s)	718, 966
HhaI	GCGC	4 cut(s)	50, 52, 364, 366
Hin1I	GRCGYC	1 cut(s)	739
Hin1II	CATG	4 cut(s)	362, 499, 559, 944
Hin6I	GCGC	4 cut(s)	48, 50, 362, 364
HinP1I	GCGC	4 cut(s)	48, 50, 362, 364
HincII	GTYRAC	1 cut(s)	737
HindII	GTYRAC	1 cut(s)	737
HinfI	GANTC	5 cut(s)	79, 122, 139, 317, 833
HphI	GGTGA	6 cut(s)	26, 194, 206, 302, 326, 347
Hpy166II	GTNNAC	3 cut(s)	321, 408, 737
Hpy188I	TCNGA	7 cut(s)	57, 127, 175, 283, 477, 752, 986
Hpy188III	TCNNGA	2 cut(s)	496, 811
Hpy8I	GTNNAC	3 cut(s)	321, 408, 737
Hpy99I	CGWCG	3 cut(s)	735, 738, 741
HpyAV	CCTTC	5 cut(s)	161, 304, 422, 442, 478
HpyCH4III	ACNGT	5 cut(s)	44, 290, 731, 860, 982
HpyCH4IV	ACGT	3 cut(s)	8, 186, 739
HpyCH4V	TGCA	4 cut(s)	403, 408, 524, 566
HpyF10VI	GCNNNNNNNGC	4 cut(s)	372, 621, 656, 875
HpyF3I	CTNAG	3 cut(s)	32, 54, 63
HpySE526I	ACGT	3 cut(s)	8, 186, 739
Hsp92I	GRCGYC	1 cut(s)	739
Hsp92II	CATG	4 cut(s)	362, 499, 559, 944
HspAI	GCGC	4 cut(s)	48, 50, 362, 364
Kzo9I	GATC	7 cut(s)	16, 211, 250, 391, 502, 645, 705
LmnI	GCTCC	1 cut(s)	813
Lsp1109I	GCAGC	1 cut(s)	957
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	3 cut(s)	195, 714, 771
MaeII	ACGT	3 cut(s)	8, 186, 739
MaeIII	GTNAC	4 cut(s)	35, 182, 341, 976
MalI	GATC	7 cut(s)	18, 213, 252, 393, 504, 647, 707
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	7 cut(s)	16, 211, 250, 391, 502, 645, 705
MboII	GAAGA	6 cut(s)	110, 126, 188, 374, 592, 709
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	410, 810
MluCI	AATT	3 cut(s)	234, 238, 529
MlyI	GAGTC	3 cut(s)	88, 131, 326
MmeI	TCCRAC	2 cut(s)	760, 870
MseI	TTAA	2 cut(s)	92, 237
MspA1I	CMGCKG	1 cut(s)	948
MvnI	CGCG	2 cut(s)	50, 364
MwoI	GCNNNNNNNGC	4 cut(s)	372, 621, 656, 875
NcoI	CCATGG	1 cut(s)	940
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	7 cut(s)	16, 211, 250, 391, 502, 645, 705
NlaIII	CATG	4 cut(s)	362, 499, 559, 944
NlaIV	GGNNCC	1 cut(s)	466
NmeAIII	GCCGAG	2 cut(s)	666, 851
NmuCI	GTSAC	3 cut(s)	182, 341, 976
NspV	TTCGAA	1 cut(s)	137
PagI	TCATGA	1 cut(s)	495
PauI	GCGCGC	2 cut(s)	48, 362
PfeI	GAWTC	2 cut(s)	139, 833
PflFI	GACNNNGTC	1 cut(s)	858
PflMI	CCANNNNNTGG	2 cut(s)	543, 973
PkrI	GCNGC	2 cut(s)	880, 947
PleI	GAGTC	3 cut(s)	87, 130, 325
PmaCI	CACGTG	1 cut(s)	9
PmlI	CACGTG	1 cut(s)	9
PpsI	GAGTC	3 cut(s)	87, 130, 325
Ppu21I	YACGTR	1 cut(s)	9
PpuMI	RGGWCCY	1 cut(s)	465
PshBI	ATTAAT	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	465
PspCI	CACGTG	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	465
PspPPI	RGGWCCY	1 cut(s)	465
PsuI	RGATCY	1 cut(s)	391
PsyI	GACNNNGTC	1 cut(s)	858
PteI	GCGCGC	2 cut(s)	48, 362
RsaI	GTAC	3 cut(s)	273, 560, 904
RsaNI	GTAC	3 cut(s)	272, 559, 903
SalI	GTCGAC	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	92, 237
SatI	GCNGC	2 cut(s)	879, 946
Sau3AI	GATC	7 cut(s)	16, 211, 250, 391, 502, 645, 705
Sau96I	GGNCC	1 cut(s)	465
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	3 cut(s)	88, 131, 326
SduI	GDGCHC	2 cut(s)	410, 810
SfaNI	GCATC	1 cut(s)	511
SfcI	CTRYAG	1 cut(s)	629
SfuI	TTCGAA	1 cut(s)	137
SgrDI	CGTCGACG	1 cut(s)	735
SinI	GGWCC	1 cut(s)	465
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	234, 238, 529
SsiI	CCGC	3 cut(s)	480, 879, 948
SspI	AATATT	1 cut(s)	611
SspMI	CTAG	3 cut(s)	195, 714, 771
StyI	CCWWGG	1 cut(s)	940
TaaI	ACNGT	5 cut(s)	44, 290, 731, 860, 982
TaiI	ACGT	3 cut(s)	11, 189, 742
TaqI	TCGA	5 cut(s)	137, 201, 533, 641, 736
TasI	AATT	3 cut(s)	234, 238, 529
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	2 cut(s)	139, 833
Tru1I	TTAA	2 cut(s)	92, 237
Tru9I	TTAA	2 cut(s)	92, 237
TscAI	CASTG	6 cut(s)	71, 249, 410, 607, 850, 904
TseFI	GTSAC	3 cut(s)	182, 341, 976
TseI	GCWGC	1 cut(s)	945
Tsp45I	GTSAC	3 cut(s)	182, 341, 976
TspDTI	ATGAA	3 cut(s)	276, 505, 948
TspRI	CASTG	6 cut(s)	71, 249, 410, 607, 850, 904
Tth111I	GACNNNGTC	1 cut(s)	858
Van91I	CCANNNNNTGG	2 cut(s)	543, 973
VneI	GTGCAC	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	465
VspI	ATTAAT	1 cut(s)	237
XcmI	CCANNNNNNNNNTGG	1 cut(s)	947
XmiI	GTMKAC	1 cut(s)	736
XspI	CTAG	3 cut(s)	195, 714, 771
ZraI	GACGTC	1 cut(s)	740
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.