Rh4BG108900

Domain of unknown function (DUF3444)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0002036
Physical Location & Seq
Forward (+)
18468551 .. 18468886
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG108900.1

Sequence Viewer

Length: 336 bp
ATGTTGGCAGAGGAGTACAAGGTGAAGGATGAATCGTACCTGACTGAGGTCGCCAAAATTTCAGAAAAGATGAACTTCTATGATCACATCACCTTGGGAAATTGCTCTATGGTAGAGGCTAAGCAAAATAATCTTAGAGAAGTCATCAAATTAGGCCACAAGATTTTTGTGAGCAATGAGTTCGAAGAGGAGAGTGAATTGAAGAGACAACTACCAGTGACTCAAGGTGAGTGTGATGACAAGAAGAAGAAAGTTGCTGGTTTACCCACGGATGCGAGGAATATGCGGAAGAAGCTGGAAAAGCAAACCAAGGAATGCAAAGAGGTGGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3444 DnaJ

Protein Analysis

111

Amino Acids

12.88

Weight (kDa)

6.17

Isoelectric Point (pI)

55.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 286
AcsI RAATTY 1 cut(s) 57
AfaI GTAC 2 cut(s) 17, 38
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 202
AluBI AGCT 1 cut(s) 295
AluI AGCT 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 199
AoxI GGCC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 57
AsuHPI GGTGA 3 cut(s) 34, 82, 239
AsuII TTCGAA 1 cut(s) 183
BcgI CGANNNNNNTGC 4 cut(s) 163, 197, 265, 299
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 199
BlpI GCTNAGC 1 cut(s) 120
BmsI GCATC 1 cut(s) 262
BoxI GACNNNNGTC 1 cut(s) 47
Bpu1102I GCTNAGC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 207
BsaJI CCNNGG 3 cut(s) 93, 267, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 181
BseDI CCNNGG 3 cut(s) 93, 267, 309
BseGI GGATG 2 cut(s) 34, 277
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 2 cut(s) 26, 203
BshFI GGCC 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 320
BsnI GGCC 1 cut(s) 156
Bsp119I TTCGAA 1 cut(s) 183
Bsp143I GATC 1 cut(s) 82
Bsp1720I GCTNAGC 1 cut(s) 120
BspACI CCGC 1 cut(s) 286
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 37
BspT104I TTCGAA 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 3 cut(s) 93, 267, 309
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 2 cut(s) 93, 309
Bst6I CTCTTC 2 cut(s) 180, 197
BstBI TTCGAA 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 45, 120, 134
BstDSI CCRYGG 1 cut(s) 267
BstENI CCTNNNNNAGG 1 cut(s) 44
BstF5I GGATG 2 cut(s) 34, 277
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 199
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 2 cut(s) 292, 301
BstPAI GACNNNNGTC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 2 cut(s) 34, 277
BtsIMutI CAGTG 1 cut(s) 222
Csp6I GTAC 2 cut(s) 16, 37
CviJI RGCY 3 cut(s) 119, 156, 295
CviKI_1 RGCY 3 cut(s) 119, 156, 295
CviQI GTAC 2 cut(s) 16, 37
DdeI CTNAG 3 cut(s) 45, 120, 134
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 180, 197
EarI CTCTTC 2 cut(s) 180, 197
Eco130I CCWWGG 2 cut(s) 93, 309
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoT14I CCWWGG 2 cut(s) 93, 309
ErhI CCWWGG 2 cut(s) 93, 309
FaiI YATR 4 cut(s) 81, 110, 284, 334
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FbaI TGATCA 1 cut(s) 82
FokI GGATG 2 cut(s) 41, 284
HaeIII GGCC 1 cut(s) 156
HinfI GANTC 2 cut(s) 32, 220
HphI GGTGA 3 cut(s) 34, 82, 239
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 301
HpyF3I CTNAG 3 cut(s) 45, 120, 134
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 1 cut(s) 82
LpnPI CCDG 4 cut(s) 53, 228, 243, 281
LweI GCATC 1 cut(s) 262
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 5 cut(s) 197, 214, 256, 259, 301
MluCI AATT 4 cut(s) 57, 100, 149, 197
MlyI GAGTC 1 cut(s) 214
MnlI CCTC 6 cut(s) 4, 40, 109, 181, 270, 316
Mva1269I GAATGC 1 cut(s) 320
MwoI GCNNNNNNNGC 2 cut(s) 292, 301
NdeII GATC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 217
NspV TTCGAA 1 cut(s) 183
PctI GAATGC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 32
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
PshAI GACNNNNGTC 1 cut(s) 47
RsaI GTAC 2 cut(s) 17, 38
RsaNI GTAC 2 cut(s) 16, 37
Sau3AI GATC 1 cut(s) 82
SchI GAGTC 1 cut(s) 214
SetI ASST 7 cut(s) 24, 42, 51, 95, 229, 297, 327
SfaNI GCATC 1 cut(s) 262
SfuI TTCGAA 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
Sse9I AATT 4 cut(s) 57, 100, 149, 197
SsiI CCGC 1 cut(s) 286
StyI CCWWGG 2 cut(s) 93, 309
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 57, 100, 149, 197
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 1 cut(s) 32
TscAI CASTG 1 cut(s) 222
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 45, 86
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 222
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.