Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

46108531 .. 46109091

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG348100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAATTTCTATGACCACATAACTCTGGGTGATTGCTCACCTCTGGAGGCTAAGCAAAAGATCTTGGGGGAAGTGATCAAGCTTGGCCATAAAATAATTGTAAGTAAAGAGTTCGAAGAAGAGAGCAAATTGAAAAGGCAACTGTTGGTGGCCAGGGGTGAATGTGACGAGGCGAGGCTCAAGATTGCTGGGCTGAACAAAGAAGTCACAACCTTGAAGAAGAAACTGGAGAAACAAACTAAGGAGAACAAGGCTTTGGAATCCCAGGGTCATGATCAGAAGCGGGCCGGGAGAGAGCCATTGACCAAAGAGCTGGAGGATAGGGATGTGAACCTTAACTTGGCGGATGCGGATGAGGTGGTGCAGCGGCTGAAAAAGGAGATTAAAGATGTCACTGTCCTAAGGGACAAGGAAAGAGCGGAAGCCATGGAGAAGGAGCGTGAGCAAGCCCACTCAAGTCTTGCCCTGCATAATTCTCTCTCTGGAGCCATTAACATCTTTGAGCGGCATCTGATGGAGCCATGGAGGACAAGAAGCACACCGCACCGGGCTGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

186

Amino Acids

21.38

Weight (kDa)

7.79

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	419, 505
AciI	CCGC	7 cut(s)	283, 344, 350, 367, 419, 505, 542
AcoI	YGGCCR	2 cut(s)	85, 150
AcsI	RAATTY	1 cut(s)	4
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	133, 217, 557
AjnI	CCWGG	2 cut(s)	152, 264
AjuI	GAANNNNNNNTTGG	4 cut(s)	239, 271, 323, 355
AluBI	AGCT	2 cut(s)	82, 313
AluI	AGCT	2 cut(s)	82, 313
AlwNI	CAGNNNCTG	1 cut(s)	370
AoxI	GGCC	3 cut(s)	85, 150, 285
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	285
AsuC2I	CCSGG	2 cut(s)	289, 548
AsuHPI	GGTGA	3 cut(s)	30, 41, 170
AsuII	TTCGAA	1 cut(s)	114
AxyI	CCTNAGG	1 cut(s)	401
BalI	TGGCCA	2 cut(s)	87, 152
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	1 cut(s)	508
BciT130I	CCWGG	2 cut(s)	154, 266
BclI	TGATCA	2 cut(s)	75, 274
BcnI	CCSGG	2 cut(s)	289, 548
BglII	AGATCT	1 cut(s)	60
BisI	GCNGC	3 cut(s)	365, 368, 506
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	3 cut(s)	366, 369, 507
Bme1390I	CCNGG	4 cut(s)	154, 266, 289, 548
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	487, 519
BmrFI	CCNGG	4 cut(s)	154, 266, 289, 548
BmsI	GCATC	2 cut(s)	337, 517
BpmI	CTGGAG	4 cut(s)	65, 248, 335, 504
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	164, 439
BpuMI	CCSGG	2 cut(s)	289, 548
BsaJI	CCNNGG	5 cut(s)	153, 264, 265, 426, 521
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	231
Bse21I	CCTNAGG	1 cut(s)	401
BseBI	CCWGG	2 cut(s)	154, 266
BseDI	CCNNGG	5 cut(s)	153, 264, 265, 426, 521
BseGI	GGATG	3 cut(s)	331, 352, 358
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	383
BshFI	GGCC	3 cut(s)	87, 152, 287
BsiSI	CCGG	2 cut(s)	288, 547
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	419
BsnI	GGCC	3 cut(s)	87, 152, 287
Bsp119I	TTCGAA	1 cut(s)	114
Bsp143I	GATC	3 cut(s)	60, 75, 274
Bsp1720I	GCTNAGC	1 cut(s)	51
Bsp19I	CCATGG	2 cut(s)	426, 521
BspACI	CCGC	7 cut(s)	283, 344, 350, 367, 419, 505, 542
BspANI	GGCC	3 cut(s)	87, 152, 287
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	487, 519
BspT104I	TTCGAA	1 cut(s)	114
BsrBI	CCGCTC	2 cut(s)	419, 505
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	5 cut(s)	153, 264, 265, 426, 521
BssMI	GATC	3 cut(s)	60, 75, 274
BssT1I	CCWWGG	2 cut(s)	426, 521
Bst2UI	CCWGG	2 cut(s)	154, 266
Bst4CI	ACNGT	2 cut(s)	144, 397
Bst6I	CTCTTC	1 cut(s)	114
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	2 cut(s)	285, 447
BstDEI	CTNAG	3 cut(s)	51, 240, 401
BstDSI	CCRYGG	2 cut(s)	426, 521
BstF5I	GGATG	3 cut(s)	331, 352, 358
BstKTI	GATC	3 cut(s)	63, 78, 277
BstMBI	GATC	3 cut(s)	60, 75, 274
BstNI	CCWGG	2 cut(s)	154, 266
BstSCI	CCNGG	4 cut(s)	152, 264, 287, 546
BstV1I	GCAGC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	60
Bsu36I	CCTNAGG	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	87, 152, 287
BtgI	CCRYGG	2 cut(s)	426, 521
BtsCI	GGATG	3 cut(s)	331, 352, 358
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	285, 447
CaiI	CAGNNNCTG	1 cut(s)	370
CciI	TCATGA	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	285
CviAII	CATG	3 cut(s)	272, 427, 522
DdeI	CTNAG	3 cut(s)	51, 240, 401
DpnI	GATC	3 cut(s)	62, 77, 276
DpnII	GATC	3 cut(s)	60, 75, 274
EaeI	YGGCCR	2 cut(s)	85, 150
Eam1104I	CTCTTC	1 cut(s)	114
EarI	CTCTTC	1 cut(s)	114
EciI	GGCGGA	1 cut(s)	359
Eco130I	CCWWGG	2 cut(s)	426, 521
Eco81I	CCTNAGG	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	152, 264
EcoT14I	CCWWGG	2 cut(s)	426, 521
ErhI	CCWWGG	2 cut(s)	426, 521
FaeI	CATG	3 cut(s)	275, 430, 525
FaiI	YATR	7 cut(s)	12, 20, 90, 273, 428, 471, 523
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	3 cut(s)	271, 426, 521
FauI	CCCGC	1 cut(s)	276
FbaI	TGATCA	2 cut(s)	75, 274
Fnu4HI	GCNGC	3 cut(s)	365, 368, 506
FokI	GGATG	3 cut(s)	338, 359, 365
Fsp4HI	GCNGC	3 cut(s)	365, 368, 506
GluI	GCNGC	3 cut(s)	365, 368, 506
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	4 cut(s)	65, 248, 335, 504
HaeIII	GGCC	3 cut(s)	87, 152, 287
HapII	CCGG	2 cut(s)	288, 547
Hin1II	CATG	3 cut(s)	275, 430, 525
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	2 cut(s)	288, 547
HphI	GGTGA	3 cut(s)	30, 41, 170
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	279, 513
Hpy188III	TCNNGA	4 cut(s)	44, 181, 272, 483
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	144, 397
HpyCH4V	TGCA	2 cut(s)	364, 469
HpyF3I	CTNAG	3 cut(s)	51, 240, 401
Hsp92II	CATG	3 cut(s)	275, 430, 525
Ksp22I	TGATCA	2 cut(s)	75, 274
Kzo9I	GATC	3 cut(s)	60, 75, 274
LmnI	GCTCC	3 cut(s)	436, 485, 517
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	337, 517
MaeIII	GTNAC	3 cut(s)	164, 205, 391
MalI	GATC	3 cut(s)	62, 77, 276
MbiI	CCGCTC	2 cut(s)	419, 505
MboI	GATC	3 cut(s)	60, 75, 274
MboII	GAAGA	4 cut(s)	128, 131, 229, 232
MflI	RGATCY	1 cut(s)	60
MlsI	TGGCCA	2 cut(s)	87, 152
MluCI	AATT	4 cut(s)	4, 96, 128, 472
MluNI	TGGCCA	2 cut(s)	87, 152
MnlI	CCTC	7 cut(s)	40, 51, 163, 168, 310, 349, 519
Mox20I	TGGCCA	2 cut(s)	87, 152
MscI	TGGCCA	2 cut(s)	87, 152
MseI	TTAA	3 cut(s)	336, 384, 492
Msp20I	TGGCCA	2 cut(s)	87, 152
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	2 cut(s)	288, 547
MspR9I	CCNGG	4 cut(s)	154, 266, 289, 548
MvaI	CCWGG	2 cut(s)	154, 266
NciI	CCSGG	2 cut(s)	289, 548
NcoI	CCATGG	2 cut(s)	426, 521
NdeII	GATC	3 cut(s)	60, 75, 274
NlaIII	CATG	3 cut(s)	275, 430, 525
NlaIV	GGNNCC	2 cut(s)	487, 519
NmuCI	GTSAC	3 cut(s)	164, 205, 391
NspV	TTCGAA	1 cut(s)	114
PagI	TCATGA	1 cut(s)	271
PasI	CCCWGGG	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	366, 369, 507
Psp6I	CCWGG	2 cut(s)	152, 264
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	152, 264
PspN4I	GGNNCC	2 cut(s)	487, 519
PspPI	GGNCC	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	60
SaqAI	TTAA	3 cut(s)	336, 384, 492
SatI	GCNGC	3 cut(s)	365, 368, 506
Sau3AI	GATC	3 cut(s)	60, 75, 274
Sau96I	GGNCC	1 cut(s)	285
ScrFI	CCNGG	4 cut(s)	154, 266, 289, 548
SetI	ASST	6 cut(s)	43, 84, 215, 315, 336, 360
SfaNI	GCATC	2 cut(s)	337, 517
SfuI	TTCGAA	1 cut(s)	114
SmlI	CTYRAG	2 cut(s)	179, 454
SmoI	CTYRAG	2 cut(s)	179, 454
Sse9I	AATT	4 cut(s)	4, 96, 128, 472
SsiI	CCGC	7 cut(s)	283, 344, 350, 367, 419, 505, 542
StyD4I	CCNGG	4 cut(s)	152, 264, 287, 546
StyI	CCWWGG	2 cut(s)	426, 521
TaaI	ACNGT	2 cut(s)	144, 397
TaqI	TCGA	1 cut(s)	114
TasI	AATT	4 cut(s)	4, 96, 128, 472
TauI	GCSGC	2 cut(s)	370, 508
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	3 cut(s)	336, 384, 492
Tru9I	TTAA	3 cut(s)	336, 384, 492
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	3 cut(s)	164, 205, 391
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	3 cut(s)	164, 205, 391
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	400
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.