Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002036

Physical Location & Seq

Genomic Coordinates Forward (+)

59089191 .. 59090237

Gene Structure 1047 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035008

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGACGGAAGAAGAACTTGATGTAATGAGGGCACAATACTATATTCGAAGTACTGTTGGTCTCCATTCGCTGGCGAAAGACAAATTCGCGCATGACCCTCCAGCCGGGCACATTGTCATTCATCATACCCAGTTTAAAATGGGGTTAAGACTTCCGCTTAGTTCCTTTTTTCATCGTGCTCTTCGTGATATAAAAATTGTCATAGGTCAAATTTCACCTATAATGCTACGGAATCAGAAATATTCTTGTCATCCTTGGGCAATACTCTTGATCGAACTTGTCATCCTTCTTCAGAGACATCCACGATTGCTCCGCCGCCATCACAACACAAAGGACACCACCACTGCGATGTCACCACCAAAGCCACCAATGGACCGAGCTAGGACAGAGAAGCCCAGCCCAAGACTGACGTCCTTTGTACAGAATGTTGATCTCACCTGCCTCAGAGATGCATTAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.69

Weight (kDa)

10.08

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002036)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28880 FvH4_1g29111 FvH4_1g29422 FvH4_3g26312 FvH4_3g30613 FvH4_3g37082 FvH4_6g20922
rosa_chinensis	RchiOBHm_Chr6g0267751
rosa_laevigata	RLG00000001633 RLG00000009125 RLG00000009185 RLG00000013920 RLG00000029463 RLG00000035008
rosa_multiflora	Rmu_sc0000725.1_g000014 Rmu_sc0007681.1_g000006 Rmu_sc0008058.1_g000006 Rmu_ssc0000146.1_g000011
rosa_roxburghii	Rroxscaffold_3G00236910 Rroxscaffold_4G00328890 Rroxscaffold_5G00347550 Rroxscaffold_7G00199890
rosa_rugosa	Rorug03G0294400 Rorug04G0032500 Rorug07G0164400 Rorug07G0242300
rosa_samantha	Rh1AG092000 Rh1AG092100 Rh1CG089000 Rh1CG089100 Rh4AG132600 Rh4BG108900 Rh4CG140300 Rh4DG100900 Rh4DG101000 Rh4DG109200 Rh6BG164600 Rh6DG150300 Rh6DG150400 Rh7AG351300 Rh7BG377400 Rh7BG408800 Rh7CG332900 Rh7CG368600 Rh7DG348100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	446
AatII	GACGTC	1 cut(s)	413
Acc36I	ACCTGC	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccII	CGCG	1 cut(s)	89
AciI	CCGC	3 cut(s)	155, 313, 316
AcsI	RAATTY	2 cut(s)	83, 210
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	410
AfaI	GTAC	2 cut(s)	52, 420
AfiI	CCNNNNNNNGG	2 cut(s)	70, 104
AloI	GAACNNNNNNTCC	2 cut(s)	267, 299
AluBI	AGCT	2 cut(s)	380, 459
AluI	AGCT	2 cut(s)	380, 459
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	2 cut(s)	65, 289
ApoI	RAATTY	2 cut(s)	83, 210
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	207, 345, 427
AsuII	TTCGAA	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	373
BaeGI	GKGCMC	2 cut(s)	34, 111
Bbv12I	GWGCWC	1 cut(s)	181
BccI	CCATC	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	65, 289
BfaI	CTAG	2 cut(s)	381, 460
BfuAI	ACCTGC	1 cut(s)	446
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	106
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	46
BpuMI	CCSGG	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	410
BsaI	GGTCTC	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	254
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 104
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	250, 282, 298
BseLI	CCNNNNNNNGG	2 cut(s)	70, 104
BseMII	CTCAG	1 cut(s)	457
BseNI	ACTGG	1 cut(s)	130
BseSI	GKGCMC	2 cut(s)	34, 111
BseYI	CCCAGC	1 cut(s)	395
Bsh1236I	CGCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	70, 104
BsmAI	GTCTC	2 cut(s)	65, 289
Bso31I	GGTCTC	1 cut(s)	65
Bsp119I	TTCGAA	1 cut(s)	46
Bsp1286I	GDGCHC	3 cut(s)	34, 111, 181
Bsp1407I	TGTACA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	270, 430
BspACI	CCGC	3 cut(s)	155, 313, 316
BspCNI	CTCAG	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	89
BspMI	ACCTGC	1 cut(s)	446
BspQI	GCTCTTC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	65
BsrGI	TGTACA	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	2 cut(s)	270, 430
BssNI	GRCGYC	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	410
BstAUI	TGTACA	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	158, 443
BstF5I	GGATG	3 cut(s)	250, 282, 298
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	2 cut(s)	273, 433
BstMAI	GTCTC	2 cut(s)	65, 289
BstMBI	GATC	2 cut(s)	270, 430
BstPAI	GACNNNNGTC	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	104
BstSLI	GKGCMC	2 cut(s)	34, 111
BstUI	CGCG	1 cut(s)	89
BtgZI	GCGATG	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	250, 282, 298
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	373
Csp6I	GTAC	2 cut(s)	51, 419
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	6 cut(s)	104, 364, 380, 394, 399, 459
CviKI_1	RGCY	6 cut(s)	104, 364, 380, 394, 399, 459
CviQI	GTAC	2 cut(s)	51, 419
DdeI	CTNAG	2 cut(s)	158, 443
DpnI	GATC	2 cut(s)	272, 432
DpnII	GATC	2 cut(s)	270, 430
DraI	TTTAAA	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
EciI	GGCGGA	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	1 cut(s)	95
FaiI	YATR	6 cut(s)	42, 93, 126, 191, 203, 221
FalI	AAGNNNNNCTT	1 cut(s)	32
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	3 cut(s)	237, 269, 285
Fsp4HI	GCNGC	1 cut(s)	316
FspBI	CTAG	2 cut(s)	381, 460
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	316
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	84
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	207, 345, 427
Hpy188I	TCNGA	3 cut(s)	237, 294, 446
Hpy188III	TCNNGA	2 cut(s)	185, 268
HpyAV	CCTTC	1 cut(s)	296
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	158, 443
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	270, 430
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	6 cut(s)	56, 114, 118, 143, 409, 451
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	381, 460
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	1 cut(s)	351
MalI	GATC	2 cut(s)	272, 432
MboI	GATC	2 cut(s)	270, 430
MboII	GAAGA	4 cut(s)	20, 23, 173, 281
MhlI	GDGCHC	3 cut(s)	34, 111, 181
MluCI	AATT	3 cut(s)	83, 195, 210
MnlI	CCTC	3 cut(s)	21, 108, 452
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	3 cut(s)	135, 146, 455
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	106
MvnI	CGCG	1 cut(s)	89
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	2 cut(s)	270, 430
NlaIII	CATG	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	351
NsiI	ATGCAT	1 cut(s)	454
NspV	TTCGAA	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	232
PflMI	CCANNNNNTGG	1 cut(s)	70
PkrI	GCNGC	1 cut(s)	317
PshAI	GACNNNNGTC	1 cut(s)	409
PspFI	CCCAGC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	373
RsaI	GTAC	2 cut(s)	52, 420
RsaNI	GTAC	2 cut(s)	51, 419
RseI	CAYNNNNRTG	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	3 cut(s)	135, 146, 455
SatI	GCNGC	1 cut(s)	316
Sau3AI	GATC	2 cut(s)	270, 430
Sau96I	GGNCC	1 cut(s)	373
ScaI	AGTACT	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	3 cut(s)	34, 111, 181
SetI	ASST	6 cut(s)	208, 220, 382, 413, 440, 461
SfaNI	GCATC	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	46
SinI	GGWCC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	347
Sse9I	AATT	3 cut(s)	83, 195, 210
SsiI	CCGC	3 cut(s)	155, 313, 316
SspI	AATATT	1 cut(s)	242
SspMI	CTAG	2 cut(s)	381, 460
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	46, 273
TaqII	GACCGA	1 cut(s)	390
TasI	AATT	3 cut(s)	83, 195, 210
TatI	WGTACW	2 cut(s)	50, 418
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	135, 146, 455
Tru9I	TTAA	3 cut(s)	135, 146, 455
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	351
Tsp45I	GTSAC	1 cut(s)	351
TspDTI	ATGAA	2 cut(s)	110, 161
TspGWI	ACGGA	2 cut(s)	20, 244
TspRI	CASTG	1 cut(s)	349
Van91I	CCANNNNNTGG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	2 cut(s)	83, 210
XspI	CTAG	2 cut(s)	381, 460
ZraI	GACGTC	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.