Rroxscaffold_7G00199890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002036
Physical Location & Seq
Forward (+)
47178446 .. 47179197
752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00199890.1

Sequence Viewer

Length: 519 bp
ATGAAGAAGAGGATGCGAGAGGAGAATAAGGATGAGGATGAGGATGCACGCCGAAGAGGTTTGAGAAGGGGAAGAGGATTGAAACAGACCATTAAGCTTAAGCGAAGCGGAGGCGCACTTGTTCCCGCCAAGGCCAAGAAGACCATGAAAAAGATGGCGGACGAGTATGAGGTGAAAGATGCTTCATATCTTGCCGAGATCTTAGGGGAAGTGATCAAGCCGGGTCACAAGATCTTTGTTAGCAAGGAGTTCAAGGAGGATAGCAAACTTAAGAGAAGAAAATGGAGAAGCGAGACTAAGGAGAACAAGGCGCCGGAAGCTCAAGGTCATGAGCGGAAGCGAGAGATTGAGCGCTTAACCAAAGAGTTGGAGGACCATAAGGTGAACCCGCAATTGGCGAAAATGAGCTTGGCGGATGGTGAGGAGGAGGTGCAGCAGCTGAAGAAGGAGTTGGAAGATGTCGTTGTCCCGAAGGATAAGGAGAAGTTGTGGAGCAGAGCGGGAACACAATCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

20.05

Weight (kDa)

9.71

Isoelectric Point (pI)

70.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 310
AccBSI CCGCTC 2 cut(s) 334, 500
AciI CCGC 7 cut(s) 108, 126, 158, 334, 389, 413, 500
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 1 cut(s) 311
AfeI AGCGCT 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 394
AflII CTTAAG 2 cut(s) 98, 269
AgsI TTSAA 2 cut(s) 82, 253
AjuI GAANNNNNNNTTGG 6 cut(s) 377, 392, 409, 424, 434, 466
AluBI AGCT 4 cut(s) 97, 320, 408, 439
AluI AGCT 4 cut(s) 97, 320, 408, 439
Alw26I GTCTC 1 cut(s) 287
AlwNI CAGNNNCTG 1 cut(s) 439
Aor51HI AGCGCT 1 cut(s) 353
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 433, 436
AspLEI GCGC 3 cut(s) 116, 313, 354
AspS9I GGNCC 1 cut(s) 373
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 184, 394, 431
AvaII GGWCC 1 cut(s) 373
BanI GGYRCC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 445, 448
BccI CCATC 2 cut(s) 148, 410
BclI TGATCA 1 cut(s) 213
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 1 cut(s) 517
BfoI RGCGCY 2 cut(s) 314, 355
BfrI CTTAAG 2 cut(s) 98, 269
BglII AGATCT 2 cut(s) 198, 231
BisI GCNGC 2 cut(s) 434, 437
BlsI GCNGC 2 cut(s) 435, 438
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 222
BmsI GCATC 3 cut(s) 3, 34, 169
BpiI GAAGAC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 311
BsaJI CCNNGG 1 cut(s) 129
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 394
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 5 cut(s) 18, 37, 43, 49, 421
BseLI CCNNNNNNNGG 1 cut(s) 394
BseRI GAGGAG 3 cut(s) 35, 437, 440
BseXI GCAGC 2 cut(s) 445, 448
BsgI GTGCAG 1 cut(s) 452
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 221, 314
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 452
BsnI GGCC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 198, 213, 231
BspACI CCGC 7 cut(s) 108, 126, 158, 334, 389, 413, 500
BspANI GGCC 1 cut(s) 134
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 312
BspT107I GGYRCC 1 cut(s) 310
BspTI CTTAAG 2 cut(s) 98, 269
BsrBI CCGCTC 2 cut(s) 334, 500
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 3 cut(s) 198, 213, 231
BssNI GRCGYC 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 129
Bst6I CTCTTC 3 cut(s) 2, 49, 67
BstACI GRCGYC 1 cut(s) 311
BstAFI CTTAAG 2 cut(s) 98, 269
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 202, 297
BstF5I GGATG 5 cut(s) 18, 37, 43, 49, 421
BstH2I RGCGCY 2 cut(s) 314, 355
BstHHI GCGC 3 cut(s) 116, 313, 354
BstKTI GATC 3 cut(s) 201, 216, 234
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 3 cut(s) 198, 213, 231
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 445, 448
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 2 cut(s) 198, 231
BstXI CCANNNNNNTGG 1 cut(s) 367
BstYI RGATCY 2 cut(s) 198, 231
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 5 cut(s) 18, 37, 43, 49, 421
Cac8I GCNNGC 1 cut(s) 49
CaiI CAGNNNCTG 1 cut(s) 439
CciI TCATGA 1 cut(s) 328
CfoI GCGC 3 cut(s) 116, 313, 354
Cfr13I GGNCC 1 cut(s) 373
CviAII CATG 2 cut(s) 145, 329
CviJI RGCY 6 cut(s) 97, 134, 220, 320, 408, 439
CviKI_1 RGCY 6 cut(s) 97, 134, 220, 320, 408, 439
DdeI CTNAG 2 cut(s) 202, 297
DinI GGCGCC 1 cut(s) 312
DpnI GATC 3 cut(s) 200, 215, 233
DpnII GATC 3 cut(s) 198, 213, 231
Eam1104I CTCTTC 3 cut(s) 2, 49, 67
EarI CTCTTC 3 cut(s) 2, 49, 67
EciI GGCGGA 2 cut(s) 173, 428
Eco130I CCWWGG 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 373
Eco47III AGCGCT 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 312
EheI GGCGCC 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 129
FaeI CATG 2 cut(s) 148, 332
FaiI YATR 5 cut(s) 146, 168, 187, 330, 378
FaqI GGGAC 1 cut(s) 452
FatI CATG 2 cut(s) 144, 328
FauI CCCGC 3 cut(s) 133, 396, 493
FbaI TGATCA 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 434, 437
FokI GGATG 5 cut(s) 25, 44, 50, 56, 428
Fsp4HI GCNGC 2 cut(s) 434, 437
FspBI CTAG 1 cut(s) 517
GlaI GCGC 3 cut(s) 115, 312, 353
GluI GCNGC 2 cut(s) 434, 437
HaeII RGCGCY 2 cut(s) 314, 355
HaeIII GGCC 1 cut(s) 134
HapII CCGG 2 cut(s) 221, 314
HhaI GCGC 3 cut(s) 116, 313, 354
Hin1I GRCGYC 1 cut(s) 311
Hin1II CATG 2 cut(s) 148, 332
Hin6I GCGC 3 cut(s) 114, 311, 352
HinP1I GCGC 3 cut(s) 114, 311, 352
HindIII AAGCTT 1 cut(s) 95
HpaII CCGG 2 cut(s) 221, 314
HphI GGTGA 3 cut(s) 184, 394, 431
Hpy166II GTNNAC 1 cut(s) 385
Hpy188III TCNNGA 2 cut(s) 329, 469
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 3 cut(s) 60, 439, 466
HpyCH4V TGCA 2 cut(s) 47, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 202, 297
Hsp92I GRCGYC 1 cut(s) 311
Hsp92II CATG 2 cut(s) 148, 332
HspAI GCGC 3 cut(s) 114, 311, 352
KasI GGCGCC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 213
Kzo9I GATC 3 cut(s) 198, 213, 231
LmnI GCTCC 1 cut(s) 492
LpnPI CCDG 2 cut(s) 234, 327
Lsp1109I GCAGC 2 cut(s) 445, 448
LweI GCATC 3 cut(s) 3, 34, 169
MaeI CTAG 1 cut(s) 517
MaeIII GTNAC 1 cut(s) 224
MalI GATC 3 cut(s) 200, 215, 233
MbiI CCGCTC 2 cut(s) 334, 500
MboI GATC 3 cut(s) 198, 213, 231
MboII GAAGA 8 cut(s) 16, 19, 66, 84, 151, 288, 454, 467
MfeI CAATTG 1 cut(s) 392
MflI RGATCY 2 cut(s) 198, 231
MluCI AATT 1 cut(s) 392
Mly113I GGCGCC 1 cut(s) 311
MmeI TCCRAC 2 cut(s) 348, 432
MseI TTAA 4 cut(s) 93, 99, 270, 356
MspA1I CMGCKG 1 cut(s) 439
MspCI CTTAAG 2 cut(s) 98, 269
MspI CCGG 2 cut(s) 221, 314
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 317
NarI GGCGCC 1 cut(s) 311
NciI CCSGG 1 cut(s) 222
NdeII GATC 3 cut(s) 198, 213, 231
NlaIII CATG 2 cut(s) 148, 332
NlaIV GGNNCC 1 cut(s) 312
NmeAIII GCCGAG 1 cut(s) 220
NmuCI GTSAC 1 cut(s) 224
PagI TCATGA 1 cut(s) 328
PkrI GCNGC 2 cut(s) 435, 438
PluTI GGCGCC 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 312
PspPI GGNCC 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 439
PsuI RGATCY 2 cut(s) 198, 231
PvuII CAGCTG 1 cut(s) 439
SaqAI TTAA 4 cut(s) 93, 99, 270, 356
SatI GCNGC 2 cut(s) 434, 437
Sau3AI GATC 3 cut(s) 198, 213, 231
Sau96I GGNCC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 222
SetI ASST 9 cut(s) 61, 99, 174, 322, 328, 384, 410, 432, 441
SfaNI GCATC 3 cut(s) 3, 34, 169
SfoI GGCGCC 1 cut(s) 312
SinI GGWCC 1 cut(s) 373
SmlI CTYRAG 3 cut(s) 98, 269, 321
SmoI CTYRAG 3 cut(s) 98, 269, 321
Sse9I AATT 1 cut(s) 392
SsiI CCGC 7 cut(s) 108, 126, 158, 334, 389, 413, 500
SspDI GGCGCC 1 cut(s) 310
SspMI CTAG 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 129
TasI AATT 1 cut(s) 392
Tru1I TTAA 4 cut(s) 93, 99, 270, 356
Tru9I TTAA 4 cut(s) 93, 99, 270, 356
TseFI GTSAC 1 cut(s) 224
TseI GCWGC 2 cut(s) 433, 436
Tsp45I GTSAC 1 cut(s) 224
TspDTI ATGAA 3 cut(s) 17, 161, 174
Vha464I CTTAAG 2 cut(s) 98, 269
VpaK11BI GGWCC 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XspI CTAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.