Rorug07G0242300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002036
Physical Location & Seq
Reverse (-)
22278434 .. 22280459
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0242300.1

Sequence Viewer

Length: 564 bp
ATGGCTGAAACATCCGGCGACGATTCCAAACCCCACCTCATCTTCTGCTACGGCACACTCAAGCGAGGCTTCTACAACCACAAGCTCGATCACCAAGGAATTGACCAAGACGACGCCGTCTTCATTGGCCCCTACATTACCCGCCACACCTACCCCCTCGTCTGCGGCCCTCACGGAATTCAGTACCTGATCAACCTCCCCGGTTCAGGTCATCGAATCAACGGCGAGCTCTACGCACTTGTGACCCAGGGGCTGGCCCGGTTCGGCGAGCTAGAAGGCACCTCGGTCGGGCTCTACGAACGGCTCACGGTTCCTGTTGTATTTCTTGGCATTATCCGGCATAGCTCCGGCCTCGTCCTCGTCCTCGTCCTCGTCGCCTTTGCACGGCCAGCCGGTCTCAGAGATGTGAATCAGAAGCTTCTTGCAGCTGAGGGATCCGAGGACGGCGTAGACGGCGTCGATTTAGGGTTATCGAACTTCTATTTCGGCGAGCTCAGTCATGTTGGGCTGGAAGAGGAAGTAATCCAACAAGGCAACGACACTTGTTTGGGGTTCGATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.33

Weight (kDa)

4.99

Isoelectric Point (pI)

24.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GGACT PF06094 14 - 107 1.7e-11 Gamma-glutamyl cyclotransferase, AIG2-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 253
AccI GTMKAC 1 cut(s) 450
AciI CCGC 2 cut(s) 142, 165
AclWI GGATC 2 cut(s) 429, 442
AcoI YGGCCR 1 cut(s) 386
AcsI RAATTY 1 cut(s) 177
AcyI GRCGYC 2 cut(s) 114, 456
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 4 cut(s) 206, 253, 288, 384
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 7 cut(s) 85, 229, 271, 345, 418, 428, 493
AluI AGCT 7 cut(s) 85, 229, 271, 345, 418, 428, 493
Alw21I GWGCWC 2 cut(s) 231, 495
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 2 cut(s) 429, 442
AlwNI CAGNNNCTG 2 cut(s) 187, 253
AoxI GGCC 5 cut(s) 127, 166, 255, 349, 386
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 177
AspS9I GGNCC 3 cut(s) 128, 167, 256
AsuC2I CCSGG 2 cut(s) 201, 259
AsuHPI GGTGA 1 cut(s) 83
BamHI GGATCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 3 cut(s) 231, 294, 495
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 2 cut(s) 231, 495
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 437
BceAI ACGGC 7 cut(s) 67, 101, 238, 317, 401, 460, 469
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 189
BcnI CCSGG 2 cut(s) 201, 259
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 1 cut(s) 272
BisI GCNGC 2 cut(s) 166, 426
BlsI GCNGC 2 cut(s) 167, 427
Bme1390I CCNGG 3 cut(s) 201, 248, 259
BmgT120I GGNCC 3 cut(s) 128, 167, 256
BmiI GGNNCC 4 cut(s) 130, 280, 312, 436
BmrFI CCNGG 3 cut(s) 201, 248, 259
BpiI GAAGAC 1 cut(s) 112
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 201, 259
BsaBI GATNNNNATC 1 cut(s) 408
BsaHI GRCGYC 2 cut(s) 114, 456
BsaI GGTCTC 1 cut(s) 401
BsaJI CCNNGG 6 cut(s) 94, 199, 246, 247, 282, 438
Bsc4I CCNNNNNNNGG 4 cut(s) 206, 253, 288, 384
Bse118I RCCGGY 1 cut(s) 392
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 6 cut(s) 94, 199, 246, 247, 282, 438
BseGI GGATG 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 4 cut(s) 206, 253, 288, 384
BseMII CTCAG 3 cut(s) 412, 420, 508
BseXI GCAGC 1 cut(s) 437
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 5 cut(s) 129, 168, 257, 351, 388
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 231, 495
BsiSI CCGG 6 cut(s) 15, 201, 259, 337, 348, 393
BslI CCNNNNNNNGG 4 cut(s) 206, 253, 288, 384
BsmAI GTCTC 1 cut(s) 401
BsnI GGCC 5 cut(s) 129, 168, 257, 351, 388
Bso31I GGTCTC 1 cut(s) 401
Bsp1286I GDGCHC 3 cut(s) 231, 294, 495
Bsp143I GATC 3 cut(s) 88, 189, 434
BspACI CCGC 2 cut(s) 142, 165
BspANI GGCC 5 cut(s) 129, 168, 257, 351, 388
BspCNI CTCAG 3 cut(s) 411, 421, 507
BspLI GGNNCC 4 cut(s) 130, 280, 312, 436
BspPI GGATC 2 cut(s) 429, 442
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 401
BsrFI RCCGGY 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 6 cut(s) 94, 199, 246, 247, 282, 438
BssMI GATC 3 cut(s) 88, 189, 434
BssNI GRCGYC 2 cut(s) 114, 456
BssT1I CCWWGG 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 1 cut(s) 507
BstACI GRCGYC 2 cut(s) 114, 456
BstC8I GCNNGC 5 cut(s) 227, 255, 269, 390, 491
BstDEI CTNAG 3 cut(s) 398, 429, 494
BstF5I GGATG 1 cut(s) 11
BstKTI GATC 3 cut(s) 91, 192, 437
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 3 cut(s) 88, 189, 434
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 2 cut(s) 389, 453
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 199, 246, 257
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 5 cut(s) 129, 168, 257, 351, 388
BtsCI GGATG 1 cut(s) 11
Cac8I GCNNGC 5 cut(s) 227, 255, 269, 390, 491
CaiI CAGNNNCTG 2 cut(s) 187, 253
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 3 cut(s) 128, 167, 256
CseI GACGC 2 cut(s) 122, 445
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 500
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 3 cut(s) 398, 429, 494
DpnI GATC 3 cut(s) 90, 191, 436
DpnII GATC 3 cut(s) 88, 189, 434
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 386
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Ecl136II GAGCTC 2 cut(s) 229, 493
Eco130I CCWWGG 1 cut(s) 94
Eco24I GRGCYC 3 cut(s) 231, 294, 495
Eco31I GGTCTC 1 cut(s) 401
Eco53kI GAGCTC 2 cut(s) 229, 493
EcoICRI GAGCTC 2 cut(s) 229, 493
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 94
EcoT38I GRGCYC 3 cut(s) 231, 294, 495
ErhI CCWWGG 1 cut(s) 94
FaeI CATG 1 cut(s) 503
FaiI YATR 2 cut(s) 342, 501
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 1 cut(s) 499
FauI CCCGC 1 cut(s) 149
FbaI TGATCA 1 cut(s) 189
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 2 cut(s) 166, 426
FriOI GRGCYC 3 cut(s) 231, 294, 495
Fsp4HI GCNGC 2 cut(s) 166, 426
FspBI CTAG 1 cut(s) 272
GluI GCNGC 2 cut(s) 166, 426
HaeIII GGCC 5 cut(s) 129, 168, 257, 351, 388
HapII CCGG 6 cut(s) 15, 201, 259, 337, 348, 393
HgaI GACGC 2 cut(s) 122, 445
Hin1I GRCGYC 2 cut(s) 114, 456
Hin1II CATG 1 cut(s) 503
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 3 cut(s) 23, 216, 409
HpaII CCGG 6 cut(s) 15, 201, 259, 337, 348, 393
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 401, 414, 439
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 4 cut(s) 23, 116, 377, 461
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 383, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 389, 453
HpyF3I CTNAG 3 cut(s) 398, 429, 494
Hsp92I GRCGYC 2 cut(s) 114, 456
Hsp92II CATG 1 cut(s) 503
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 3 cut(s) 88, 189, 434
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 1 cut(s) 437
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 90, 191, 436
MboI GATC 3 cut(s) 88, 189, 434
MboII GAAGA 3 cut(s) 34, 112, 524
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 3 cut(s) 231, 294, 495
MluCI AATT 2 cut(s) 99, 177
MmeI TCCRAC 1 cut(s) 550
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 6 cut(s) 15, 201, 259, 337, 348, 393
MspR9I CCNGG 3 cut(s) 201, 248, 259
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 2 cut(s) 389, 453
NciI CCSGG 2 cut(s) 201, 259
NdeII GATC 3 cut(s) 88, 189, 434
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 4 cut(s) 130, 280, 312, 436
NmuCI GTSAC 1 cut(s) 241
PasI CCCWGGG 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PfeI GAWTC 3 cut(s) 23, 216, 409
PflFI GACNNNGTC 2 cut(s) 116, 455
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 2 cut(s) 167, 427
Psp124BI GAGCTC 2 cut(s) 231, 495
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 4 cut(s) 130, 280, 312, 436
PspPI GGNCC 3 cut(s) 128, 167, 256
PstNI CAGNNNCTG 2 cut(s) 187, 253
PsuI RGATCY 1 cut(s) 434
PsyI GACNNNGTC 2 cut(s) 116, 455
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 2 cut(s) 231, 495
SatI GCNGC 2 cut(s) 166, 426
Sau3AI GATC 3 cut(s) 88, 189, 434
Sau96I GGNCC 3 cut(s) 128, 167, 256
ScrFI CCNGG 3 cut(s) 201, 248, 259
SduI GDGCHC 3 cut(s) 231, 294, 495
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 99, 177
SsiI CCGC 2 cut(s) 142, 165
SspMI CTAG 1 cut(s) 272
SstI GAGCTC 2 cut(s) 231, 495
StyD4I CCNGG 3 cut(s) 199, 246, 257
StyI CCWWGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 5 cut(s) 87, 214, 459, 473, 555
TaqII GACCGA 1 cut(s) 274
TasI AATT 2 cut(s) 99, 177
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 3 cut(s) 23, 216, 409
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 112
TspGWI ACGGA 1 cut(s) 189
Tth111I GACNNNGTC 2 cut(s) 116, 455
Van91I CCANNNNNTGG 1 cut(s) 253
XapI RAATTY 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.