Rh1AG092100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002036
Physical Location & Seq
Forward (+)
16038693 .. 16039409
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG092100.1

Sequence Viewer

Length: 327 bp
ATGGTGAAAGAGCACGAGGTGAATGATGAATCTTATCTTGCTGAAGTTGCCAAGATTTCAGGCAAGATGAATTTCTATGATCACATTACACTGAGTGATTCCTTGCTTCTAAAGGCTAAGCAGAAGATTTTGGGAGAGGTGATTAAGTTGAATCACAAGTTTTTTGTGAATAAAGAATTTGAAGAGGAGAGCAAACTGAAGAGAGCGAGACAGATGGGGCCTTTGCATGAGGGACTTAGTAGGATGTACAAGCTAGCCTCCGACACTCAGTTCAAATATCTTTGGGATCAAAAGATCATTGATCCGAAAGCCTTGGCGGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.59

Weight (kDa)

7.92

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 317
AclWI GGATC 2 cut(s) 294, 296
AcsI RAATTY 2 cut(s) 70, 176
AcuI CTGAAG 2 cut(s) 63, 218
AdeI CACNNNGTG 2 cut(s) 19, 95
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 3 cut(s) 151, 182, 274
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 2 cut(s) 294, 296
AoxI GGCC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 70, 176
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 3 cut(s) 16, 31, 151
AsuNHI GCTAGC 1 cut(s) 253
BauI CACGAG 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 15
BccI CCATC 1 cut(s) 208
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 1 cut(s) 254
BlpI GCTNAGC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 219
BmtI GCTAGC 1 cut(s) 257
Bpu1102I GCTNAGC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 249
BseMII CTCAG 2 cut(s) 83, 281
BseRI GAGGAG 1 cut(s) 200
BshFI GGCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 15
BslFI GGGAC 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 202
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 220
Bsp1286I GDGCHC 1 cut(s) 15
Bsp1407I TGTACA 1 cut(s) 246
Bsp143I GATC 4 cut(s) 79, 286, 294, 301
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 1 cut(s) 317
BspANI GGCC 1 cut(s) 220
BspCNI CTCAG 2 cut(s) 84, 280
BspLI GGNNCC 1 cut(s) 219
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 2 cut(s) 294, 296
BsrGI TGTACA 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 4 cut(s) 79, 286, 294, 301
BssSI CACGAG 1 cut(s) 14
BssT1I CCWWGG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 14
Bst6I CTCTTC 2 cut(s) 177, 194
BstAUI TGTACA 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 92, 117, 236, 267
BstF5I GGATG 1 cut(s) 249
BstKTI GATC 4 cut(s) 82, 289, 297, 304
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 4 cut(s) 79, 286, 294, 301
BstMWI GCNNNNNNNGC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 89
Cac8I GCNNGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 227
CviJI RGCY 5 cut(s) 116, 220, 253, 257, 311
CviKI_1 RGCY 5 cut(s) 116, 220, 253, 257, 311
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 4 cut(s) 92, 117, 236, 267
DpnI GATC 4 cut(s) 81, 288, 296, 303
DpnII GATC 4 cut(s) 79, 286, 294, 301
DraIII CACNNNGTG 2 cut(s) 19, 95
Eam1104I CTCTTC 2 cut(s) 177, 194
EarI CTCTTC 2 cut(s) 177, 194
Eco130I CCWWGG 1 cut(s) 312
Eco57I CTGAAG 2 cut(s) 63, 218
EcoO109I RGGNCCY 1 cut(s) 218
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 78, 228, 325
FaqI GGGAC 1 cut(s) 246
FatI CATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 79
FokI GGATG 1 cut(s) 256
FspBI CTAG 1 cut(s) 254
HaeIII GGCC 1 cut(s) 220
Hin1II CATG 1 cut(s) 230
HinfI GANTC 3 cut(s) 29, 98, 151
HphI GGTGA 3 cut(s) 16, 31, 151
Hpy188I TCNGA 2 cut(s) 262, 306
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 4 cut(s) 92, 117, 236, 267
Hsp92II CATG 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 4 cut(s) 79, 286, 294, 301
LpnPI CCDG 1 cut(s) 45
MaeI CTAG 1 cut(s) 254
MalI GATC 4 cut(s) 81, 288, 296, 303
MboI GATC 4 cut(s) 79, 286, 294, 301
MboII GAAGA 3 cut(s) 136, 194, 211
MhlI GDGCHC 1 cut(s) 15
MluCI AATT 2 cut(s) 70, 176
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 5 cut(s) 10, 130, 178, 223, 268
MseI TTAA 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 4 cut(s) 79, 286, 294, 301
NheI GCTAGC 1 cut(s) 253
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 219
PfeI GAWTC 3 cut(s) 29, 98, 151
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 4 cut(s) 79, 286, 294, 301
Sau96I GGNCC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 15
SetI ASST 3 cut(s) 21, 141, 255
Sse9I AATT 2 cut(s) 70, 176
SsiI CCGC 1 cut(s) 317
SspMI CTAG 1 cut(s) 254
StyI CCWWGG 1 cut(s) 312
TasI AATT 2 cut(s) 70, 176
TatI WGTACW 1 cut(s) 246
TfiI GAWTC 3 cut(s) 29, 98, 151
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 96
TspDTI ATGAA 2 cut(s) 42, 83
TspRI CASTG 1 cut(s) 96
XapI RAATTY 2 cut(s) 70, 176
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.