FvH4_3g30613

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
23934444 .. 23937070
2627 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30613.t1

Sequence Viewer

Length: 1740 bp
ATGTCTTCTGATTCGGCCAACCTTGAAGGTTATATGGCAAGAGTGGCAGAGCAAGATGCTGCTCGAGAGCTCCAACGCTCGGAGCTTAGACAACATCTAGATTTTTTGATTGGATCAAGTGGTCTGTTTGAGCGACTTCTGGATCACAAGATTGTCGATCCTGTTCGAGAGAAAACGCCAACTTCAAGCGGGATTAATGCTTCCACTTGCTCTAGAAGTTCACTATGCCTTGGCGAAGTTGAGGGTAGCAATCGGTCAAGTTTGTACGATCACGCTGAATATCATCCATTTGATATGTTTGATATGGAAGATAGCATGATTGGTTGTCTCGTCTCGAGTGGAAATTCTATTTTGGCTCGGTATGGCACTCGGGAGCATTTGTCGCAATTTGCAATTGAGAGAAAGATGAGAGTATATCTTCATTGTACCGCTCGTGTCGTGAGGATAGACGCATTTAATGCAGATCTAGTTCCTGGTTGGATTGCACATGATATGCCTCCTGAAACTTCCTTGTTTATCAAGAATAAAGAAAAGGTGAAGAAGATTAAAGTTGCGCATTCAAAGAGGCAAGAGTCTATTTGTATCTCTACTCCCTTGTTGAGCAATCTAGGCACGAGAGAGACACCAATCGTAGCGGACGAATATGGGACCAATGAGGGTCAAGTGCAGAAGGAAGCGATCTCTCCATTGGTTATTACTCCATTTGGGTGTCTTCCACTTGCCTCCTCTATTCCAAATGAGGGTCTTAGTCCTTTGAAAGAAGGCCAAATTCCTGTTGCAGTTCCTTTGCAGATGGATGTCCGCCTGAATGTTGATGCTGGGAGTGAATGTCAAAATGAAGAACAACATGATCGTCGTCAAGTTCTTTCTTTAGAATATTTGGCTCCAGTTGAGATTTTTGTTCCGTCTGCTCCCCAAGTGTCTTCTTCTCAATTTGCTCAAGAGTTGTCCAAGAATGCTGATTTGCTTGATCGAAAACTTGCGGCTACTCTGAGCGATCAACCTTTGCCACTGAAAGAAGGCATTTTTGATCCTGATTTTGAACTTCACATAAAATGCAATGTTGTAATTGCCGAGGTTGTTCAACTGCTTAAGGGTTTGTACAATTGTGAGGCTTTTCAAGATCCCCCGATCCTTGCACAGCTTCGTGAAACCGAGCGTGAACTAGCTCGTGTGAAGAAGATCGTGGAGACAGTGGAAAACGAAAAGAACAAGATGAAAGTCTTTATTAAATCTGCTGCTTGCCGCGAGGCTATGTCAGAGAGAAAATGTGACAATCAACAAGGCTTGATTCGAGTTGCCTGTGTGGATCTGAAGGAATCGAAGAAGAAAGTTGCAGATCTTCGTGTCGCTAATTTGGGTTTGGTGAGATCCCTAGAAGAAGCCAAACTCGAATTGTCCATTGTGCAAAATAGAGTGTTTGCTCTGTCCAATTATGTTCTTGCGTTGAGACAAGGAGAATGCCTGGATTCTATAATGCACTGTGCGATCGAATTGTACTTCAAAAATTCAAAGCAACGACACGAGCAAAAGGGTCCAGTGATGAATGCGCTCCAAAAATTTGAGCGAGAAGCTCAGCGGATGCAATATCGTCTTTTCCTTCAACAAGGTTTGCTAAAAGGTAACGATCCGGAGATGAAAAGAACTTTAGATTCGTGGTATGAAGTGTCAAGCACCAAAGAATCAGATGTTGCTTCATCGTCAAGTGATGAAGGGTATGAAGTGGAAAGCTTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

580

Amino Acids

64.98

Weight (kDa)

5.54

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 555
AccBSI CCGCTC 1 cut(s) 431
AccII CGCG 1 cut(s) 1248
AccIII TCCGGA 1 cut(s) 1630
AciI CCGC 7 cut(s) 189, 429, 635, 802, 983, 1246, 1579
AclWI GGATC 9 cut(s) 121, 150, 152, 1025, 1118, 1126, 1317, 1365, 1622
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 4 cut(s) 343, 768, 1507, 1559
AcuI CTGAAG 1 cut(s) 1334
AfaI GTAC 4 cut(s) 266, 427, 1103, 1499
AfiI CCNNNNNNNGG 2 cut(s) 79, 740
AflII CTTAAG 1 cut(s) 1091
AjnI CCWGG 2 cut(s) 472, 1464
AluBI AGCT 6 cut(s) 70, 85, 1144, 1169, 1574, 1731
AluI AGCT 6 cut(s) 70, 85, 1144, 1169, 1574, 1731
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 5 cut(s) 332, 337, 614, 1184, 1444
AlwI GGATC 9 cut(s) 121, 150, 152, 1025, 1118, 1126, 1317, 1365, 1622
Ama87I CYCGRG 3 cut(s) 63, 334, 369
Aor13HI TCCGGA 1 cut(s) 1630
AoxI GGCC 2 cut(s) 15, 763
ApeKI GCWGC 2 cut(s) 59, 1238
ApoI RAATTY 4 cut(s) 343, 768, 1507, 1559
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 2 cut(s) 556, 1552
AspS9I GGNCC 2 cut(s) 648, 1535
AsuHPI GGTGA 2 cut(s) 547, 1378
AvaI CYCGRG 3 cut(s) 63, 334, 369
AvaII GGWCC 2 cut(s) 648, 1535
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 4 cut(s) 432, 613, 1170, 1523
BbsI GAAGAC 2 cut(s) 704, 915
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 46, 1225
BccI CCATC 1 cut(s) 787
BciT130I CCWGG 2 cut(s) 474, 1466
BcoDI GTCTC 5 cut(s) 332, 337, 614, 1184, 1444
BfaI CTAG 6 cut(s) 98, 213, 467, 608, 1166, 1376
BfrI CTTAAG 1 cut(s) 1091
BglII AGATCT 2 cut(s) 463, 1339
BisI GCNGC 4 cut(s) 60, 984, 1239, 1246
BlpI GCTNAGC 1 cut(s) 1575
BlsI GCNGC 4 cut(s) 61, 985, 1240, 1247
Bme1390I CCNGG 2 cut(s) 474, 1466
Bme18I GGWCC 2 cut(s) 648, 1535
BmeT110I CYCGRG 3 cut(s) 63, 334, 369
BmgT120I GGNCC 2 cut(s) 648, 1535
BmiI GGNNCC 3 cut(s) 649, 885, 1536
BmrFI CCNGG 2 cut(s) 474, 1466
BmsI GCATC 3 cut(s) 46, 805, 1572
BpiI GAAGAC 2 cut(s) 704, 915
BpmI CTGGAG 1 cut(s) 870
Bpu1102I GCTNAGC 1 cut(s) 1575
BpuEI CTTGAG 1 cut(s) 924
BsaJI CCNNGG 2 cut(s) 229, 1074
BsaWI WCCGGW 1 cut(s) 1630
BsaXI ACNNNNNCTCC 4 cut(s) 365, 395, 814, 844
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 740
Bse1I ACTGG 2 cut(s) 887, 1538
Bse3DI GCAATG 1 cut(s) 1066
BseAI TCCGGA 1 cut(s) 1630
BseBI CCWGG 2 cut(s) 474, 1466
BseDI CCNNGG 2 cut(s) 229, 1074
BseGI GGATG 3 cut(s) 283, 802, 1587
BseLI CCNNNNNNNGG 2 cut(s) 79, 740
BseMI GCAATG 1 cut(s) 1066
BseMII CTCAG 2 cut(s) 983, 1589
BseNI ACTGG 2 cut(s) 887, 1538
BseRI GAGGAG 1 cut(s) 715
BseXI GCAGC 2 cut(s) 46, 1225
BseYI CCCAGC 1 cut(s) 818
BsgI GTGCAG 1 cut(s) 686
Bsh1236I CGCG 1 cut(s) 1248
Bsh1285I CGRYCG 1 cut(s) 1491
BshFI GGCC 2 cut(s) 17, 765
BsiEI CGRYCG 1 cut(s) 1491
BsiHKAI GWGCWC 1 cut(s) 72
BsiHKCI CYCGRG 3 cut(s) 63, 334, 369
BsiSI CCGG 1 cut(s) 1631
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 2 cut(s) 79, 740
BsmAI GTCTC 5 cut(s) 332, 337, 614, 1184, 1444
BsmBI CGTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 661
BsmI GAATGC 4 cut(s) 556, 961, 1466, 1552
BsnI GGCC 2 cut(s) 17, 765
BsoBI CYCGRG 3 cut(s) 63, 334, 369
Bsp1286I GDGCHC 1 cut(s) 72
Bsp13I TCCGGA 1 cut(s) 1630
Bsp1407I TGTACA 1 cut(s) 1101
Bsp1720I GCTNAGC 1 cut(s) 1575
BspACI CCGC 7 cut(s) 189, 429, 635, 802, 983, 1246, 1579
BspANI GGCC 2 cut(s) 17, 765
BspCNI CTCAG 2 cut(s) 984, 1588
BspEI TCCGGA 1 cut(s) 1630
BspFNI CGCG 1 cut(s) 1248
BspLI GGNNCC 3 cut(s) 649, 885, 1536
BspPI GGATC 9 cut(s) 121, 150, 152, 1025, 1118, 1126, 1317, 1365, 1622
BspTI CTTAAG 1 cut(s) 1091
BsrBI CCGCTC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 1066
BsrGI TGTACA 1 cut(s) 1101
BsrI ACTGG 2 cut(s) 887, 1538
BssECI CCNNGG 2 cut(s) 229, 1074
BssSI CACGAG 4 cut(s) 432, 613, 1170, 1523
BssT1I CCWWGG 1 cut(s) 229
Bst2BI CACGAG 4 cut(s) 432, 613, 1170, 1523
Bst2UI CCWGG 2 cut(s) 474, 1466
Bst4CI ACNGT 2 cut(s) 1195, 1484
BstAFI CTTAAG 1 cut(s) 1091
BstAPI GCANNNNNTGC 1 cut(s) 458
BstAUI TGTACA 1 cut(s) 1101
BstC8I GCNNGC 1 cut(s) 1243
BstDEI CTNAG 5 cut(s) 86, 746, 992, 1575, 1732
BstF5I GGATG 3 cut(s) 283, 802, 1587
BstFNI CGCG 1 cut(s) 1248
BstHHI GCGC 2 cut(s) 556, 1552
BstMAI GTCTC 5 cut(s) 332, 337, 614, 1184, 1444
BstMCI CGRYCG 1 cut(s) 1491
BstMWI GCNNNNNNNGC 4 cut(s) 44, 382, 458, 609
BstNI CCWGG 2 cut(s) 474, 1466
BstSCI CCNGG 2 cut(s) 472, 1464
BstUI CGCG 1 cut(s) 1248
BstV1I GCAGC 2 cut(s) 46, 1225
BstV2I GAAGAC 2 cut(s) 704, 915
BstX2I RGATCY 5 cut(s) 463, 1123, 1309, 1339, 1370
BstYI RGATCY 5 cut(s) 463, 1123, 1309, 1339, 1370
BsuRI GGCC 2 cut(s) 17, 765
BtsCI GGATG 3 cut(s) 283, 802, 1587
BtsIMutI CAGTG 4 cut(s) 1010, 1200, 1480, 1545
Cac8I GCNNGC 1 cut(s) 1243
CfoI GCGC 2 cut(s) 556, 1552
Cfr13I GGNCC 2 cut(s) 648, 1535
CseI GACGC 1 cut(s) 458
Csp6I GTAC 4 cut(s) 265, 426, 1102, 1498
CviAII CATG 3 cut(s) 316, 488, 848
CviQI GTAC 4 cut(s) 265, 426, 1102, 1498
DdeI CTNAG 5 cut(s) 86, 746, 992, 1575, 1732
EaeI YGGCCR 1 cut(s) 15
EciI GGCGGA 1 cut(s) 791
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 72
Eco47I GGWCC 2 cut(s) 648, 1535
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 1334
Eco88I CYCGRG 3 cut(s) 63, 334, 369
EcoICRI GAGCTC 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 472, 1464
EcoT14I CCWWGG 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 3 cut(s) 319, 491, 851
FaqI GGGAC 1 cut(s) 661
FatI CATG 3 cut(s) 315, 487, 847
FauI CCCGC 1 cut(s) 182
Fnu4HI GCNGC 4 cut(s) 60, 984, 1239, 1246
FokI GGATG 3 cut(s) 270, 809, 1594
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 4 cut(s) 60, 984, 1239, 1246
FspBI CTAG 6 cut(s) 98, 213, 467, 608, 1166, 1376
FspI TGCGCA 1 cut(s) 555
GlaI GCGC 2 cut(s) 555, 1551
GluI GCNGC 4 cut(s) 60, 984, 1239, 1246
GsaI CCCAGC 1 cut(s) 822
GsuI CTGGAG 1 cut(s) 870
HaeIII GGCC 2 cut(s) 17, 765
HapII CCGG 1 cut(s) 1631
HgaI GACGC 1 cut(s) 458
HhaI GCGC 2 cut(s) 556, 1552
Hin1II CATG 3 cut(s) 319, 491, 851
Hin6I GCGC 2 cut(s) 554, 1550
HinP1I GCGC 2 cut(s) 554, 1550
HindIII AAGCTT 1 cut(s) 1729
HinfI GANTC 7 cut(s) 11, 572, 1291, 1319, 1469, 1652, 1682
HpaII CCGG 1 cut(s) 1631
HphI GGTGA 2 cut(s) 547, 1378
Hpy166II GTNNAC 2 cut(s) 221, 1163
Hpy188I TCNGA 6 cut(s) 10, 82, 993, 1261, 1314, 1687
Hpy8I GTNNAC 2 cut(s) 221, 1163
Hpy99I CGWCG 1 cut(s) 858
HpyAV CCTTC 7 cut(s) 20, 664, 755, 1013, 1309, 1610, 1706
HpyCH4III ACNGT 2 cut(s) 1195, 1484
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 382, 458, 609
HpyF3I CTNAG 5 cut(s) 86, 746, 992, 1575, 1732
Hsp92II CATG 3 cut(s) 319, 491, 851
HspAI GCGC 2 cut(s) 554, 1550
Kpn2I TCCGGA 1 cut(s) 1630
LmnI GCTCC 6 cut(s) 75, 82, 373, 889, 916, 1557
Lsp1109I GCAGC 2 cut(s) 46, 1225
LweI GCATC 3 cut(s) 46, 805, 1572
MaeI CTAG 6 cut(s) 98, 213, 467, 608, 1166, 1376
MaeIII GTNAC 2 cut(s) 1271, 1622
MbiI CCGCTC 1 cut(s) 431
MfeI CAATTG 2 cut(s) 393, 1105
MflI RGATCY 5 cut(s) 463, 1123, 1309, 1339, 1370
MhlI GDGCHC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 2 cut(s) 97, 458
MroI TCCGGA 1 cut(s) 1630
MseI TTAA 5 cut(s) 195, 456, 546, 1092, 1230
MslI CAYNNNNRTG 1 cut(s) 706
MspA1I CMGCKG 1 cut(s) 1579
MspCI CTTAAG 1 cut(s) 1091
MspI CCGG 1 cut(s) 1631
MspR9I CCNGG 2 cut(s) 474, 1466
MunI CAATTG 2 cut(s) 393, 1105
Mva1269I GAATGC 4 cut(s) 556, 961, 1466, 1552
MvaI CCWGG 2 cut(s) 474, 1466
MvnI CGCG 1 cut(s) 1248
MwoI GCNNNNNNNGC 4 cut(s) 44, 382, 458, 609
NlaIII CATG 3 cut(s) 319, 491, 851
NlaIV GGNNCC 3 cut(s) 649, 885, 1536
NmeAIII GCCGAG 1 cut(s) 1099
NmuCI GTSAC 1 cut(s) 1271
NsbI TGCGCA 1 cut(s) 555
PaeR7I CTCGAG 2 cut(s) 63, 334
PcsI WCGNNNNNNNCGW 1 cut(s) 636
PctI GAATGC 4 cut(s) 556, 961, 1466, 1552
PfeI GAWTC 6 cut(s) 11, 1291, 1319, 1469, 1652, 1682
PkrI GCNGC 4 cut(s) 61, 985, 1240, 1247
Ple19I CGATCG 1 cut(s) 1491
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
PshBI ATTAAT 1 cut(s) 195
Psp124BI GAGCTC 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 472, 1464
PspFI CCCAGC 1 cut(s) 818
PspGI CCWGG 2 cut(s) 472, 1464
PspN4I GGNNCC 3 cut(s) 649, 885, 1536
PspPI GGNCC 2 cut(s) 648, 1535
PsuI RGATCY 5 cut(s) 463, 1123, 1309, 1339, 1370
PvuI CGATCG 1 cut(s) 1491
RsaI GTAC 4 cut(s) 266, 427, 1103, 1499
RsaNI GTAC 4 cut(s) 265, 426, 1102, 1498
RseI CAYNNNNRTG 1 cut(s) 706
SacI GAGCTC 1 cut(s) 72
SaqAI TTAA 5 cut(s) 195, 456, 546, 1092, 1230
SatI GCNGC 4 cut(s) 60, 984, 1239, 1246
Sau96I GGNCC 2 cut(s) 648, 1535
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 2 cut(s) 474, 1466
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 3 cut(s) 46, 805, 1572
Sfr274I CTCGAG 2 cut(s) 63, 334
SinI GGWCC 2 cut(s) 648, 1535
SlaI CTCGAG 2 cut(s) 63, 334
SmiMI CAYNNNNRTG 1 cut(s) 706
SmlI CTYRAG 4 cut(s) 63, 334, 939, 1091
SmoI CTYRAG 4 cut(s) 63, 334, 939, 1091
SsiI CCGC 7 cut(s) 189, 429, 635, 802, 983, 1246, 1579
SspI AATATT 1 cut(s) 878
SspMI CTAG 6 cut(s) 98, 213, 467, 608, 1166, 1376
SstI GAGCTC 1 cut(s) 72
StyD4I CCNGG 2 cut(s) 472, 1464
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 1195, 1484
TaqI TCGA 9 cut(s) 64, 156, 166, 335, 973, 1294, 1322, 1392, 1491
TaqII GACCGA 1 cut(s) 243
TatI WGTACW 2 cut(s) 1101, 1497
TauI GCSGC 2 cut(s) 986, 1248
TfiI GAWTC 6 cut(s) 11, 1291, 1319, 1469, 1652, 1682
Tru1I TTAA 5 cut(s) 195, 456, 546, 1092, 1230
Tru9I TTAA 5 cut(s) 195, 456, 546, 1092, 1230
TscAI CASTG 4 cut(s) 1017, 1200, 1487, 1545
TseFI GTSAC 1 cut(s) 1271
TseI GCWGC 2 cut(s) 59, 1238
Tsp45I GTSAC 1 cut(s) 1271
TspDTI ATGAA 9 cut(s) 410, 852, 1232, 1559, 1652, 1677, 1686, 1725, 1734
TspGWI ACGGA 1 cut(s) 894
TspRI CASTG 4 cut(s) 1017, 1200, 1487, 1545
Vha464I CTTAAG 1 cut(s) 1091
VpaK11BI GGWCC 2 cut(s) 648, 1535
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 4 cut(s) 343, 768, 1507, 1559
XbaI TCTAGA 2 cut(s) 97, 212
XhoI CTCGAG 2 cut(s) 63, 334
XspI CTAG 6 cut(s) 98, 213, 467, 608, 1166, 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.