Rh1CG089100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002036
Physical Location & Seq
Forward (+)
18850477 .. 18851484
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG089100.1

Sequence Viewer

Length: 927 bp
ATGCCTAGTATTGAAGAGGAGTCTGAGGAAGGATTGGAGGAAGCAGATGCGGAAGAGGAAGGCAAAGTGTCACGGCAAAAGTGGGCTAAGAAGGGGAAAGCAACTGAGGCGATGGGTGAACCCAAGCGGAAGCGGAGCCATGTTGAGGCCAATAAGGATATTGAAATTGTTGAACCTAGTGCTATGGTTTCCATTGCGATGCCTTCTCCTACTGTACTGGTTCCGCCGAAACCCAAGCAGACCTTGAGGAAGATGGCGGAAGAGTATGAGGTGAAAGATGAATCTTTTCTTGTTGAAGTTGCTAAGATTTCAGGCAAGATGAATTTCTATGTTCACATTACACTGGAATTTGAAGAGGAGAGCAAACTGAAGAGGCAGCTTTTAGTAGCCAAGGGTGAATGCGATGAGGAAAAGCACAAGGTTGCCAATTTAACCAAAGACGTCGCATACTTGAATAAGAAGCTAGAAAAGCAGACCAAGGAGTGCAAAGCACTAGAAGCTCAAGGTCTTGACCGGAAGCGGGAGATAGAGCGTCTGACCAAGGAGTTGGAGGATAGGGACGTGTATCTCAATTTGGCGAAGACAAGATTGGTGGACGCGAATGAGGAGGTGCAACGGCTGAAGAAGAAAATTGTAGATGTGGTTTCTCAGAAAGATAGGGAGAAAGCAGAGGCTGTGGAGAAGGACGTGAACAGAGCCGCGCAAGTGTTACCATGCAAGCTTCACTTTCTGGTGCCATTGATATTTTTGAGCGGAATCTGGTTGCAGAGCGAAGACAGCTGGGGCCTTTGCATGAGGGACTCAGTAGGGTGTATAAGCTGGCTTCCGACACTCAGTTCAAATATCTCCGGGATCAAAAGATCATTGATCCGAAAGCCTTGGCAGAAGCACAAGAGGCCGAAAGGAAGAGAAAGTTGGATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

35.33

Weight (kDa)

8.39

Isoelectric Point (pI)

65.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 733
AccBSI CCGCTC 1 cut(s) 753
AccII CGCG 2 cut(s) 599, 701
AciI CCGC 8 cut(s) 50, 127, 133, 224, 257, 520, 699, 753
AclWI GGATC 3 cut(s) 860, 862, 926
AcsI RAATTY 2 cut(s) 322, 347
AcuI CTGAAG 2 cut(s) 389, 641
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 145, 520
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 7 cut(s) 14, 164, 173, 296, 353, 454, 840
AjiI CACGTC 2 cut(s) 562, 688
AjuI GAANNNNNNNTTGG 3 cut(s) 572, 604, 898
AluBI AGCT 6 cut(s) 379, 463, 500, 721, 780, 819
AluI AGCT 6 cut(s) 379, 463, 500, 721, 780, 819
AlwI GGATC 3 cut(s) 860, 862, 926
AlwNI CAGNNNCTG 1 cut(s) 674
AoxI GGCC 3 cut(s) 147, 784, 896
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 2 cut(s) 322, 347
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 1 cut(s) 784
AsuC2I CCSGG 1 cut(s) 850
AsuHPI GGTGA 3 cut(s) 128, 283, 407
BanI GGYRCC 1 cut(s) 733
BbsI GAAGAC 2 cut(s) 587, 780
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 106, 247
BceAI ACGGC 2 cut(s) 89, 632
BcnI CCSGG 1 cut(s) 850
BfaI CTAG 4 cut(s) 6, 177, 464, 494
BisI GCNGC 2 cut(s) 377, 699
BlsI GCNGC 2 cut(s) 378, 700
Bme1390I CCNGG 1 cut(s) 850
BmgBI CACGTC 2 cut(s) 562, 688
BmgT120I GGNCC 1 cut(s) 784
BmiI GGNNCC 4 cut(s) 137, 222, 735, 785
BmrFI CCNGG 1 cut(s) 850
BmsI GCATC 2 cut(s) 37, 189
BpiI GAAGAC 2 cut(s) 587, 780
BpuEI CTTGAG 2 cut(s) 265, 486
BpuMI CCSGG 1 cut(s) 850
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 4 cut(s) 390, 477, 540, 878
BsaWI WCCGGW 1 cut(s) 513
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 520
Bse1I ACTGG 2 cut(s) 222, 348
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 4 cut(s) 390, 477, 540, 878
BseLI CCNNNNNNNGG 2 cut(s) 145, 520
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 5 cut(s) 15, 96, 662, 816, 847
BseNI ACTGG 2 cut(s) 222, 348
BseRI GAGGAG 3 cut(s) 32, 371, 620
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 780
Bsh1236I CGCG 2 cut(s) 599, 701
BshFI GGCC 3 cut(s) 149, 786, 898
BshNI GGYRCC 1 cut(s) 733
BsiSI CCGG 2 cut(s) 514, 849
BslFI GGGAC 2 cut(s) 572, 812
BslI CCNNNNNNNGG 2 cut(s) 145, 520
BsmFI GGGAC 2 cut(s) 572, 812
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 3 cut(s) 149, 786, 898
Bsp143I GATC 4 cut(s) 852, 860, 867, 918
BspACI CCGC 8 cut(s) 50, 127, 133, 224, 257, 520, 699, 753
BspANI GGCC 3 cut(s) 149, 786, 898
BspCNI CTCAG 5 cut(s) 16, 97, 661, 815, 846
BspFNI CGCG 2 cut(s) 599, 701
BspLI GGNNCC 4 cut(s) 137, 222, 735, 785
BspPI GGATC 3 cut(s) 860, 862, 926
BspT107I GGYRCC 1 cut(s) 733
BsrBI CCGCTC 1 cut(s) 753
BsrDI GCAATG 1 cut(s) 192
BsrI ACTGG 2 cut(s) 222, 348
BssECI CCNNGG 4 cut(s) 390, 477, 540, 878
BssMI GATC 4 cut(s) 852, 860, 867, 918
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 4 cut(s) 390, 477, 540, 878
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 6 cut(s) 9, 48, 255, 348, 365, 901
BstACI GRCGYC 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 719, 821
BstDEI CTNAG 7 cut(s) 24, 87, 105, 303, 648, 802, 833
BstFNI CGCG 2 cut(s) 599, 701
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 4 cut(s) 855, 863, 870, 921
BstMBI GATC 4 cut(s) 852, 860, 867, 918
BstMWI GCNNNNNNNGC 5 cut(s) 107, 469, 497, 777, 895
BstSCI CCNGG 1 cut(s) 848
BstUI CGCG 2 cut(s) 599, 701
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 2 cut(s) 587, 780
BstXI CCANNNNNNTGG 1 cut(s) 547
BsuRI GGCC 3 cut(s) 149, 786, 898
BtgZI GCGATG 3 cut(s) 125, 212, 417
BtrI CACGTC 2 cut(s) 562, 688
BtsIMutI CAGTG 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 719, 821
CaiI CAGNNNCTG 1 cut(s) 674
CfoI GCGC 1 cut(s) 703
Cfr13I GGNCC 1 cut(s) 784
CseI GACGC 2 cut(s) 521, 605
Csp6I GTAC 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviAII CATG 3 cut(s) 140, 714, 793
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 7 cut(s) 24, 87, 105, 303, 648, 802, 833
DpnI GATC 4 cut(s) 854, 862, 869, 920
DpnII GATC 4 cut(s) 852, 860, 867, 918
Eam1104I CTCTTC 6 cut(s) 9, 48, 255, 348, 365, 901
EarI CTCTTC 6 cut(s) 9, 48, 255, 348, 365, 901
EciI GGCGGA 2 cut(s) 213, 272
Eco130I CCWWGG 4 cut(s) 390, 477, 540, 878
Eco57I CTGAAG 2 cut(s) 389, 641
EcoO109I RGGNCCY 1 cut(s) 784
EcoT14I CCWWGG 4 cut(s) 390, 477, 540, 878
ErhI CCWWGG 4 cut(s) 390, 477, 540, 878
FaeI CATG 3 cut(s) 143, 717, 796
FalI AAGNNNNNCTT 4 cut(s) 227, 259, 710, 742
FaqI GGGAC 2 cut(s) 572, 812
FatI CATG 3 cut(s) 139, 713, 792
FauI CCCGC 1 cut(s) 513
Fnu4HI GCNGC 2 cut(s) 377, 699
Fsp4HI GCNGC 2 cut(s) 377, 699
FspBI CTAG 4 cut(s) 6, 177, 464, 494
GlaI GCGC 1 cut(s) 702
GluI GCNGC 2 cut(s) 377, 699
GsaI CCCAGC 1 cut(s) 784
HaeIII GGCC 3 cut(s) 149, 786, 898
HapII CCGG 2 cut(s) 514, 849
HgaI GACGC 2 cut(s) 521, 605
HhaI GCGC 1 cut(s) 703
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 3 cut(s) 143, 717, 796
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 4 cut(s) 20, 281, 756, 800
HpaII CCGG 2 cut(s) 514, 849
HphI GGTGA 3 cut(s) 128, 283, 407
Hpy166II GTNNAC 4 cut(s) 119, 334, 595, 691
Hpy188I TCNGA 5 cut(s) 25, 537, 651, 828, 872
Hpy188III TCNNGA 1 cut(s) 509
Hpy8I GTNNAC 4 cut(s) 119, 334, 595, 691
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 5 cut(s) 23, 53, 85, 213, 676
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 3 cut(s) 441, 561, 687
HpyCH4V TGCA 5 cut(s) 486, 613, 717, 766, 792
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 469, 497, 777, 895
HpyF3I CTNAG 7 cut(s) 24, 87, 105, 303, 648, 802, 833
HpySE526I ACGT 3 cut(s) 441, 561, 687
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 3 cut(s) 143, 717, 796
HspAI GCGC 1 cut(s) 701
Kzo9I GATC 4 cut(s) 852, 860, 867, 918
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 9 cut(s) 203, 297, 329, 527, 716, 745, 766, 805, 862
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 2 cut(s) 37, 189
MaeI CTAG 4 cut(s) 6, 177, 464, 494
MaeII ACGT 3 cut(s) 441, 561, 687
MaeIII GTNAC 2 cut(s) 69, 708
MalI GATC 4 cut(s) 854, 862, 869, 920
MbiI CCGCTC 1 cut(s) 753
MboI GATC 4 cut(s) 852, 860, 867, 918
MluCI AATT 6 cut(s) 165, 322, 347, 427, 571, 630
MlyI GAGTC 2 cut(s) 29, 794
MmeI TCCRAC 3 cut(s) 528, 851, 896
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 780
MspI CCGG 2 cut(s) 514, 849
MspR9I CCNGG 1 cut(s) 850
Mva1269I GAATGC 1 cut(s) 404
MvnI CGCG 2 cut(s) 599, 701
MwoI GCNNNNNNNGC 5 cut(s) 107, 469, 497, 777, 895
NciI CCSGG 1 cut(s) 850
NdeII GATC 4 cut(s) 852, 860, 867, 918
NlaIII CATG 3 cut(s) 143, 717, 796
NlaIV GGNNCC 4 cut(s) 137, 222, 735, 785
NmuCI GTSAC 1 cut(s) 69
PctI GAATGC 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 281, 756
PfoI TCCNGGA 1 cut(s) 848
PkrI GCNGC 2 cut(s) 378, 700
PleI GAGTC 2 cut(s) 28, 794
PpsI GAGTC 2 cut(s) 28, 794
PspFI CCCAGC 1 cut(s) 780
PspN4I GGNNCC 4 cut(s) 137, 222, 735, 785
PspPI GGNCC 1 cut(s) 784
PstNI CAGNNNCTG 1 cut(s) 674
PvuII CAGCTG 1 cut(s) 780
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 2 cut(s) 377, 699
Sau3AI GATC 4 cut(s) 852, 860, 867, 918
Sau96I GGNCC 1 cut(s) 784
SchI GAGTC 2 cut(s) 29, 794
ScrFI CCNGG 1 cut(s) 850
SfaNI GCATC 2 cut(s) 37, 189
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 244, 501
SmoI CTYRAG 2 cut(s) 244, 501
Sse9I AATT 6 cut(s) 165, 322, 347, 427, 571, 630
SsiI CCGC 8 cut(s) 50, 127, 133, 224, 257, 520, 699, 753
SspMI CTAG 4 cut(s) 6, 177, 464, 494
StyD4I CCNGG 1 cut(s) 848
StyI CCWWGG 4 cut(s) 390, 477, 540, 878
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 3 cut(s) 444, 564, 690
TasI AATT 6 cut(s) 165, 322, 347, 427, 571, 630
TatI WGTACW 1 cut(s) 214
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 2 cut(s) 281, 756
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 69
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 69
TspDTI ATGAA 2 cut(s) 294, 335
TspRI CASTG 1 cut(s) 348
XapI RAATTY 2 cut(s) 322, 347
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 4 cut(s) 6, 177, 464, 494
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.