FvH4_2g02250

Histone-lysine n-methyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
1850634 .. 1855688
5055 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02250.t1

Sequence Viewer

Length: 1308 bp
ATGACTCCTAGTAAAATGCAAATTGCTAATGCTTTTAAAGCGGCAAAGGCATTGGGAATTTGTACTGACGAAATCAGACCTGTCATCAGACACTTGTACAAAGTTTTTCCCAAGAACTGGGAGCATGTTGAGGCAGACAACTACAGGGTTCTATTTGATACGTACTTTGAAATGAAGGAGAACAAGGGAGAAGCAGAAAACAGAGATGAAAGACCAAGTAAAACAGTGCATTTGACTGAGGAAGACCAGGTCTCTACAAGAACTGGATCAAGTCTTGAACTGCTCCTCAAACATTCCACTCACAGTGGTAATGTCCAGTTGCCCCGTAAGGTGGCCTCTGGAAATGGAAGATTACATCCTGAAAGAGCATCAGCAGTCTCGCTTACTAGTCACACAAACTACTTCAAGAAGCCAAAGGATGAGGTATCCACATATGATGTTGTAGTTTCTGCAGAACAAACCTCAATGAGACGTCCAGGACCAATGAGTGGAGCTGGTAGAATACAGCGACCTATGACAGACTTAAATGGTGCATCTGTTAATCATGAGGACAAGAAGCCAATCATTTATATATCAGACATAACCAAATCAACTGAAAAAGTGCCTATATCCTTAGTAGATGATGCTGGAAAGGAGAGCTTGCCAAAGTTCAATTACATTCCACAAAACATCATATCCCAAAATGCCAATCTGGATATTTCACTGTCTTGCATCGCGGACGAGGATTGCTGCCCAGGTTGTTCTGGAGATTGTCTGTCAGCGGCATTTCCTTGTGCGTGTGCTCATGAAACTGGTGGGGAGTTTGTGTACACACCAGAAGGGCTACTAAAAGAAGAATTTCTAAGTAACAGTATTTCTCAGGTGAGCGAACCGGAGAAGCAACCTCGTGTTTATTGTCAAGACTGTCTTAAGAATGAAGACATGCCTGAAGAATGCAAAGGACACATGGTCCGGAGTTTTATTAAAGAATGCTGGAGAAAATGTGGATGTGACATGCAGTGTGGAAATCGTGTCGTACAAAGGGGGATAACGTGCGAGTTGCAGGTTTTCTGGACTCCTCAAGGAAAAGGCTGGGGAGTTAGAACCTTAGAGGTCTTAGAGAAAGGATCATTTGTCTGTGAATATGTCGGGGAGATATTGACTAACAATGAGTTATATGAGCGGAATATGGAAAGTACTGGTAGTGAGAGACATACATACCCCGTGATACTAGATGCAGATTGGGGGTCAGAACAAATTTTGAGGGATGATGATGCTCTGTCTGGATGCGACGCTTCACGGCAATGTTGCAAGGTTCATCAATCATAG

Protein Analysis

436

Amino Acids

48.7

Weight (kDa)

5.5

Isoelectric Point (pI)

36.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 5 - 61 1.8e-13 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 475
Acc36I ACCTGC 1 cut(s) 1033
AccB7I CCANNNNNTGG 2 cut(s) 117, 488
AccBSI CCGCTC 1 cut(s) 1162
AccII CGCG 1 cut(s) 716
AccIII TCCGGA 1 cut(s) 951
AciI CCGC 4 cut(s) 41, 716, 761, 1162
AclWI GGATC 2 cut(s) 274, 1114
AcsI RAATTY 3 cut(s) 57, 836, 1236
AcuI CTGAAG 1 cut(s) 948
AcyI GRCGYC 1 cut(s) 472
AfaI GTAC 6 cut(s) 64, 98, 164, 809, 1017, 1177
AfiI CCNNNNNNNGG 3 cut(s) 117, 331, 488
AflII CTTAAG 1 cut(s) 908
AgsI TTSAA 4 cut(s) 170, 278, 406, 652
AhdI GACNNNNNGTC 1 cut(s) 947
AhlI ACTAGT 1 cut(s) 386
AjnI CCWGG 3 cut(s) 246, 475, 733
AluBI AGCT 2 cut(s) 494, 639
AluI AGCT 2 cut(s) 494, 639
Alw21I GWGCWC 1 cut(s) 784
Alw26I GTCTC 4 cut(s) 256, 382, 463, 1183
AlwI GGATC 2 cut(s) 274, 1114
Aor13HI TCCGGA 1 cut(s) 951
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 1 cut(s) 729
ApoI RAATTY 3 cut(s) 57, 836, 1236
Asp700I GAANNNNTTC 1 cut(s) 837
AspS9I GGNCC 2 cut(s) 479, 949
AsuHPI GGTGA 1 cut(s) 874
AvaII GGWCC 2 cut(s) 479, 949
BauI CACGAG 1 cut(s) 885
BbsI GAAGAC 2 cut(s) 249, 924
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 1 cut(s) 716
BceAI ACGGC 1 cut(s) 1295
BciT130I CCWGG 3 cut(s) 248, 477, 735
BciVI GTATCC 1 cut(s) 436
BcoDI GTCTC 4 cut(s) 256, 382, 463, 1183
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 3 cut(s) 9, 387, 1211
BfmI CTRYAG 2 cut(s) 142, 450
BfrI CTTAAG 1 cut(s) 908
BfuAI ACCTGC 1 cut(s) 1033
BfuI GTATCC 1 cut(s) 436
BisI GCNGC 3 cut(s) 42, 730, 762
BlsI GCNGC 3 cut(s) 43, 731, 763
BmcAI AGTACT 1 cut(s) 1177
Bme1390I CCNGG 3 cut(s) 248, 477, 735
Bme18I GGWCC 2 cut(s) 479, 949
BmeRI GACNNNNNGTC 1 cut(s) 947
BmgT120I GGNCC 2 cut(s) 479, 949
BmrFI CCNGG 3 cut(s) 248, 477, 735
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 7 cut(s) 377, 542, 613, 720, 1204, 1243, 1256
BmuI ACTGGG 1 cut(s) 127
BpiI GAAGAC 2 cut(s) 249, 924
BpmI CTGGAG 2 cut(s) 765, 994
BpuEI CTTGAG 1 cut(s) 1044
BsaAI YACGTR 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 733
BsaWI WCCGGW 2 cut(s) 871, 951
BsaXI ACNNNNNCTCC 4 cut(s) 791, 821, 967, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 331, 488
Bse1I ACTGG 5 cut(s) 122, 268, 316, 796, 1183
Bse3DI GCAATG 1 cut(s) 1289
BseAI TCCGGA 1 cut(s) 951
BseBI CCWGG 3 cut(s) 248, 477, 735
BseDI CCNNGG 1 cut(s) 733
BseGI GGATG 5 cut(s) 355, 424, 992, 1252, 1271
BseLI CCNNNNNNNGG 3 cut(s) 117, 331, 488
BseMI GCAATG 1 cut(s) 1289
BseMII CTCAG 2 cut(s) 228, 872
BseNI ACTGG 5 cut(s) 122, 268, 316, 796, 1183
BseRI GAGGAG 2 cut(s) 275, 1047
BseXI GCAGC 1 cut(s) 716
BseYI CCCAGC 1 cut(s) 1071
Bsh1236I CGCG 1 cut(s) 716
BshFI GGCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 784
BsiSI CCGG 2 cut(s) 872, 952
BslI CCNNNNNNNGG 3 cut(s) 117, 331, 488
BsmAI GTCTC 4 cut(s) 256, 382, 463, 1183
BsmBI CGTCTC 1 cut(s) 463
BsmI GAATGC 2 cut(s) 938, 974
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 784
Bsp13I TCCGGA 1 cut(s) 951
Bsp1407I TGTACA 2 cut(s) 96, 807
Bsp143I GATC 2 cut(s) 266, 1106
BspACI CCGC 4 cut(s) 41, 716, 761, 1162
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 2 cut(s) 229, 871
BspEI TCCGGA 1 cut(s) 951
BspFNI CGCG 1 cut(s) 716
BspHI TCATGA 2 cut(s) 544, 784
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 1033
BspPI GGATC 2 cut(s) 274, 1114
BspTI CTTAAG 1 cut(s) 908
BspTNI GGTCTC 1 cut(s) 256
BsrBI CCGCTC 1 cut(s) 1162
BsrDI GCAATG 1 cut(s) 1289
BsrGI TGTACA 2 cut(s) 96, 807
BsrI ACTGG 5 cut(s) 122, 268, 316, 796, 1183
BssECI CCNNGG 1 cut(s) 733
BssMI GATC 2 cut(s) 266, 1106
BssNI GRCGYC 1 cut(s) 472
BssSI CACGAG 1 cut(s) 885
Bst2BI CACGAG 1 cut(s) 885
Bst2UI CCWGG 3 cut(s) 248, 477, 735
Bst4CI ACNGT 5 cut(s) 226, 305, 705, 851, 905
BstACI GRCGYC 1 cut(s) 472
BstAFI CTTAAG 1 cut(s) 908
BstAUI TGTACA 2 cut(s) 96, 807
BstBAI YACGTR 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 6 cut(s) 237, 613, 842, 858, 1087, 1096
BstF5I GGATG 5 cut(s) 355, 424, 992, 1252, 1271
BstFNI CGCG 1 cut(s) 716
BstKTI GATC 2 cut(s) 269, 1109
BstMAI GTCTC 4 cut(s) 256, 382, 463, 1183
BstMBI GATC 2 cut(s) 266, 1106
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstNI CCWGG 3 cut(s) 248, 477, 735
BstNSI RCATGY 3 cut(s) 128, 925, 997
BstSCI CCNGG 3 cut(s) 246, 475, 733
BstSFI CTRYAG 2 cut(s) 142, 450
BstSNI TACGTA 1 cut(s) 162
BstUI CGCG 1 cut(s) 716
BstV1I GCAGC 1 cut(s) 716
BstV2I GAAGAC 2 cut(s) 249, 924
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 697
BtsCI GGATG 5 cut(s) 355, 424, 992, 1252, 1271
BtsI GCAGTG 1 cut(s) 1004
BtsIMutI CAGTG 4 cut(s) 231, 310, 701, 1004
BveI ACCTGC 1 cut(s) 1033
Cac8I GCNNGC 1 cut(s) 641
CciI TCATGA 2 cut(s) 544, 784
Cfr13I GGNCC 2 cut(s) 479, 949
CseI GACGC 1 cut(s) 1280
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 6 cut(s) 63, 97, 163, 808, 1016, 1176
CviAII CATG 6 cut(s) 125, 545, 785, 922, 946, 994
CviJI RGCY 7 cut(s) 335, 412, 494, 559, 639, 823, 1071
CviKI_1 RGCY 7 cut(s) 335, 412, 494, 559, 639, 823, 1071
CviQI GTAC 6 cut(s) 63, 97, 163, 808, 1016, 1176
DdeI CTNAG 6 cut(s) 237, 613, 842, 858, 1087, 1096
DpnI GATC 2 cut(s) 268, 1108
DpnII GATC 2 cut(s) 266, 1106
DraI TTTAAA 1 cut(s) 37
DriI GACNNNNNGTC 1 cut(s) 947
Eam1105I GACNNNNNGTC 1 cut(s) 947
Eco105I TACGTA 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 479, 949
Eco57I CTGAAG 1 cut(s) 948
EcoRII CCWGG 3 cut(s) 246, 475, 733
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 6 cut(s) 128, 548, 788, 925, 949, 997
FalI AAGNNNNNCTT 4 cut(s) 623, 655, 891, 923
FatI CATG 6 cut(s) 124, 544, 784, 921, 945, 993
FauNDI CATATG 1 cut(s) 433
Fnu4HI GCNGC 3 cut(s) 42, 730, 762
FokI GGATG 5 cut(s) 342, 431, 999, 1259, 1278
Fsp4HI GCNGC 3 cut(s) 42, 730, 762
FspBI CTAG 3 cut(s) 9, 387, 1211
GluI GCNGC 3 cut(s) 42, 730, 762
GsaI CCCAGC 1 cut(s) 1075
GsuI CTGGAG 2 cut(s) 765, 994
HaeIII GGCC 1 cut(s) 335
HapII CCGG 2 cut(s) 872, 952
HgaI GACGC 1 cut(s) 1280
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 6 cut(s) 128, 548, 788, 925, 949, 997
HinfI GANTC 2 cut(s) 4, 1054
HpaII CCGG 2 cut(s) 872, 952
HphI GGTGA 1 cut(s) 874
Hpy166II GTNNAC 2 cut(s) 808, 810
Hpy188I TCNGA 4 cut(s) 77, 89, 577, 1231
Hpy8I GTNNAC 2 cut(s) 808, 810
Hpy99I CGWCG 1 cut(s) 1274
HpyAV CCTTC 2 cut(s) 169, 812
HpyCH4III ACNGT 5 cut(s) 226, 305, 705, 851, 905
HpyCH4IV ACGT 3 cut(s) 161, 472, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpyF3I CTNAG 6 cut(s) 237, 613, 842, 858, 1087, 1096
HpySE526I ACGT 3 cut(s) 161, 472, 1031
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 6 cut(s) 128, 548, 788, 925, 949, 997
Kpn2I TCCGGA 1 cut(s) 951
Kzo9I GATC 2 cut(s) 266, 1106
LmnI GCTCC 3 cut(s) 121, 288, 491
Lsp1109I GCAGC 1 cut(s) 716
LweI GCATC 7 cut(s) 377, 542, 613, 720, 1204, 1243, 1256
MabI ACCWGGT 1 cut(s) 246
MaeI CTAG 3 cut(s) 9, 387, 1211
MaeII ACGT 3 cut(s) 161, 472, 1031
MaeIII GTNAC 3 cut(s) 389, 845, 989
MalI GATC 2 cut(s) 268, 1108
MbiI CCGCTC 1 cut(s) 1162
MboI GATC 2 cut(s) 266, 1106
MboII GAAGA 5 cut(s) 254, 360, 845, 929, 941
MhlI GDGCHC 1 cut(s) 784
MluCI AATT 5 cut(s) 21, 57, 652, 836, 1236
MlyI GAGTC 1 cut(s) 1048
MroI TCCGGA 1 cut(s) 951
MroXI GAANNNNTTC 1 cut(s) 837
MseI TTAA 5 cut(s) 36, 524, 540, 909, 963
MslI CAYNNNNRTG 1 cut(s) 1282
MspA1I CMGCKG 1 cut(s) 761
MspCI CTTAAG 1 cut(s) 908
MspI CCGG 2 cut(s) 872, 952
MspR9I CCNGG 3 cut(s) 248, 477, 735
Mva1269I GAATGC 2 cut(s) 938, 974
MvaI CCWGG 3 cut(s) 248, 477, 735
MvnI CGCG 1 cut(s) 716
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NdeI CATATG 1 cut(s) 433
NdeII GATC 2 cut(s) 266, 1106
NlaIII CATG 6 cut(s) 128, 548, 788, 925, 949, 997
NmuCI GTSAC 2 cut(s) 389, 989
NspI RCATGY 3 cut(s) 128, 925, 997
PagI TCATGA 2 cut(s) 544, 784
PctI GAATGC 2 cut(s) 938, 974
PdmI GAANNNNTTC 1 cut(s) 837
PflFI GACNNNGTC 1 cut(s) 248
PflMI CCANNNNNTGG 2 cut(s) 117, 488
PfoI TCCNGGA 1 cut(s) 475
PkrI GCNGC 3 cut(s) 43, 731, 763
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
Ppu21I YACGTR 1 cut(s) 162
Psp6I CCWGG 3 cut(s) 246, 475, 733
PspFI CCCAGC 1 cut(s) 1071
PspGI CCWGG 3 cut(s) 246, 475, 733
PspPI GGNCC 2 cut(s) 479, 949
PstI CTGCAG 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 248
RsaI GTAC 6 cut(s) 64, 98, 164, 809, 1017, 1177
RsaNI GTAC 6 cut(s) 63, 97, 163, 808, 1016, 1176
RseI CAYNNNNRTG 1 cut(s) 1282
SaqAI TTAA 5 cut(s) 36, 524, 540, 909, 963
SatI GCNGC 3 cut(s) 42, 730, 762
Sau3AI GATC 2 cut(s) 266, 1106
Sau96I GGNCC 2 cut(s) 479, 949
ScaI AGTACT 1 cut(s) 1177
SchI GAGTC 1 cut(s) 1048
ScrFI CCNGG 3 cut(s) 248, 477, 735
SduI GDGCHC 1 cut(s) 784
SexAI ACCWGGT 1 cut(s) 246
SfaNI GCATC 7 cut(s) 377, 542, 613, 720, 1204, 1243, 1256
SfcI CTRYAG 2 cut(s) 142, 450
SinI GGWCC 2 cut(s) 479, 949
SmiMI CAYNNNNRTG 1 cut(s) 1282
SmlI CTYRAG 2 cut(s) 908, 1059
SmoI CTYRAG 2 cut(s) 908, 1059
SnaBI TACGTA 1 cut(s) 162
SpeI ACTAGT 1 cut(s) 386
Sse9I AATT 5 cut(s) 21, 57, 652, 836, 1236
SsiI CCGC 4 cut(s) 41, 716, 761, 1162
SspMI CTAG 3 cut(s) 9, 387, 1211
StyD4I CCNGG 3 cut(s) 246, 475, 733
TaaI ACNGT 5 cut(s) 226, 305, 705, 851, 905
TaiI ACGT 3 cut(s) 164, 475, 1034
TasI AATT 5 cut(s) 21, 57, 652, 836, 1236
TatI WGTACW 4 cut(s) 62, 96, 807, 1175
TauI GCSGC 2 cut(s) 44, 764
Tru1I TTAA 5 cut(s) 36, 524, 540, 909, 963
Tru9I TTAA 5 cut(s) 36, 524, 540, 909, 963
TscAI CASTG 4 cut(s) 231, 310, 708, 1004
TseFI GTSAC 2 cut(s) 389, 989
TseI GCWGC 1 cut(s) 729
Tsp45I GTSAC 2 cut(s) 389, 989
TspDTI ATGAA 5 cut(s) 188, 222, 801, 930, 1286
TspRI CASTG 4 cut(s) 231, 310, 708, 1004
Tth111I GACNNNGTC 1 cut(s) 248
Van91I CCANNNNNTGG 2 cut(s) 117, 488
Vha464I CTTAAG 1 cut(s) 908
VpaK11BI GGWCC 2 cut(s) 479, 949
XapI RAATTY 3 cut(s) 57, 836, 1236
XceI RCATGY 3 cut(s) 128, 925, 997
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 3 cut(s) 9, 387, 1211
ZraI GACGTC 1 cut(s) 473
ZrmI AGTACT 1 cut(s) 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.