Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Reverse (-)

4015298 .. 4020771

Gene Structure 5474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG032500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGCTCCCAGTAAAACACAGATTGCTAATGCTTTTAAAGCATCAAAGGCCTTGGGAATTAGTACTGAAGAAATCAGACCTGTCCTCAGAGACTTGTACAAATCTTTTCACAAGAATTGGGAGCATATTGAAGCAGACAACTACAGGGTTCTATTTGATAGATACTTCGAAATGCAGGAGAATAAGGGAGAAGCAGAAAAGAGAGATGAAAGACCAGGTAAAGCAGTGCATTTGGCTGAGGGAGACCAGGTTTCTAAAAGAACTGGATCAAGTTTTGAACTGCCCCTCAAACATTCCACTCACAGTGGAAATGTCCAATTTCCCCGTCATGTGGCCTCTGGAAATGGAAGAGTACACCCTGAAAGAGCATCAGCAGTCTCGCTTACGAGTCACACAAACTACTTCATGAAGCCAAAGAATGAGGGATCCACAAATGACGCTATAGTTTCTGCAGAACAGACCTCAATGAGACGTCCAGGACCAATGAATGGAGCTGCTAGAATACAACGACCTAAGACAGACTCAAATGGTGCATCCATTTCTCGTGAGGACAAGAAGCCAATCATTTATAAATCAGACATAACCAAATCAACTGAAAAAGTGCCCATATCCTTAGTAGATGATGTTGGGATTGAGAGCTTGCCAAAGTTCAATTACATCCCACAAAACATCATATACCAAAATGCCAATCTGAATATTTCACTGTCTCGCATTGCGGATGAGGATTGCTGCCCAGATTGTTTTGGAGATTGTCTTTCAGCAGCATTTCCTTGCGCATGTGCTCGTGAAACTGGTGGGGAGTTTGTGTACACACCAGAAGGCCTACTGAAAGAAGATTTTCTAAGTAACCGTATGGCTCTGGTGAGGGATCCGGATAAGCAACCTCATGTTTATTGTCAAGACTGTCCTATTGAGAGGTCTAAGAATGAAGACATGCCTGAAAAATGCAAAGGACACGTGGTCAGGAGGTTTATCAAAGAATGCTGGAGAAAATGTGGATGTGACATGCAGTGTGGAAATCGTGTTGTACAAAGGGGAATTTCGTGCAAGTTGCAGGTATTCTGGACTCCTCAAGGAAAAGGCTGGGGAGTTAGAACCTTAGAGGTCTTAGAAAAAGGATCATTTGTCTGTGAATATGTCGGCGAGATAATGACTAACACAGAGTTATATGAGCGGAATATGGAAAGCACTGGTAGTGAGAGACATACATACCCCGTGACACTAGATGCAGATTGGGGGTCAGAACAAATTTTGAGGGATGAGGATGCCCTCTGTCTGGATGCGACGCTTCACGGCAATGTTGCAAGGTTCATCAATCATAGATGCTTTGATGCAAACTTGGTTGATATCCCAGTTCAAGTGGAAACTCCTGACCGCCATTATTATCATCTTGCCTTCTTTACTACCAGGAAAGTGAATGCCTTTGAAGAGTTGAATTGGGTGAGTGCGCTTGCTTTCATTTATGGTACCTCCCTTGACCAAACATCTGTTGTAGAGAGGCAAATTCATGTGGTGGAATGTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

508

Amino Acids

57.48

Weight (kDa)

6.18

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIYLD	PF10440	5 - 61	5.2e-15	Ubiquitin-binding WIYLD domain
Pre-SET	PF05033	196 - 341	6.2e-13	Pre-SET motif
SET	PF00856	361 - 478	7.5e-15	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AatII	GACGTC	1 cut(s)	475
Acc16I	TGCGCA	1 cut(s)	775
Acc36I	ACCTGC	1 cut(s)	1045
Acc65I	GGTACC	1 cut(s)	1466
AccB1I	GGYRCC	1 cut(s)	1466
AccB7I	CCANNNNNTGG	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	1174
AccIII	TCCGGA	1 cut(s)	871
AciI	CCGC	3 cut(s)	716, 1174, 1375
AclWI	GGATC	6 cut(s)	274, 420, 433, 863, 876, 1126
AcsI	RAATTY	3 cut(s)	1038, 1248, 1503
AcuI	CTGAAG	1 cut(s)	87
AcvI	CACGTG	1 cut(s)	958
AcyI	GRCGYC	1 cut(s)	472
AfaI	GTAC	7 cut(s)	64, 98, 354, 809, 1029, 1468, 1522
AfiI	CCNNNNNNNGG	3 cut(s)	331, 488, 1276
AflIII	ACRYGT	1 cut(s)	955
AgsI	TTSAA	6 cut(s)	131, 278, 652, 1358, 1427, 1435
AhdI	GACNNNNNGTC	1 cut(s)	959
AjnI	CCWGG	4 cut(s)	214, 246, 475, 1406
AluBI	AGCT	2 cut(s)	494, 639
AluI	AGCT	2 cut(s)	494, 639
Alw21I	GWGCWC	1 cut(s)	784
Alw26I	GTCTC	6 cut(s)	84, 237, 382, 463, 711, 1195
AlwI	GGATC	6 cut(s)	274, 420, 433, 863, 876, 1126
Aor13HI	TCCGGA	1 cut(s)	871
AoxI	GGCC	3 cut(s)	48, 333, 820
ApeKI	GCWGC	3 cut(s)	494, 729, 761
ApoI	RAATTY	3 cut(s)	1038, 1248, 1503
Asp700I	GAANNNNTTC	1 cut(s)	837
Asp718I	GGTACC	1 cut(s)	1466
AspLEI	GCGC	2 cut(s)	776, 1450
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	874, 1453
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	606
BamHI	GGATCC	2 cut(s)	425, 868
BanI	GGYRCC	1 cut(s)	1466
BauI	CACGAG	2 cut(s)	543, 783
BbrPI	CACGTG	1 cut(s)	958
BbsI	GAAGAC	1 cut(s)	936
Bbv12I	GWGCWC	1 cut(s)	784
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	481, 716, 773
BceAI	ACGGC	1 cut(s)	1309
BciT130I	CCWGG	4 cut(s)	216, 248, 477, 1408
BcoDI	GTCTC	6 cut(s)	84, 237, 382, 463, 711, 1195
BfaI	CTAG	2 cut(s)	498, 1223
BfmI	CTRYAG	3 cut(s)	142, 441, 450
BfuAI	ACCTGC	1 cut(s)	1045
BisI	GCNGC	3 cut(s)	495, 730, 762
BlsI	GCNGC	3 cut(s)	496, 731, 763
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	216, 248, 477, 1408
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	959
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	4 cut(s)	6, 427, 870, 1468
BmrFI	CCNGG	4 cut(s)	216, 248, 477, 1408
BmrI	ACTGGG	2 cut(s)	3, 1346
BmsI	GCATC	8 cut(s)	50, 377, 542, 1216, 1255, 1270, 1313, 1321
BmuI	ACTGGG	2 cut(s)	3, 1346
BpiI	GAAGAC	1 cut(s)	936
BpmI	CTGGAG	1 cut(s)	1006
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	1056
BsaAI	YACGTR	1 cut(s)	958
BsaHI	GRCGYC	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	871
BsaXI	ACNNNNNCTCC	6 cut(s)	234, 264, 791, 821, 979, 1009
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 488, 1276
Bse1I	ACTGG	5 cut(s)	9, 268, 796, 1195, 1352
Bse3DI	GCAATG	2 cut(s)	711, 1303
BseAI	TCCGGA	1 cut(s)	871
BseBI	CCWGG	4 cut(s)	216, 248, 477, 1408
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	7 cut(s)	533, 657, 724, 1004, 1264, 1270, 1285
BseLI	CCNNNNNNNGG	3 cut(s)	331, 488, 1276
BseMI	GCAATG	2 cut(s)	711, 1303
BseMII	CTCAG	2 cut(s)	100, 228
BseNI	ACTGG	5 cut(s)	9, 268, 796, 1195, 1352
BseRI	GAGGAG	1 cut(s)	1059
BseSI	GKGCMC	1 cut(s)	606
BseXI	GCAGC	3 cut(s)	481, 716, 773
BseYI	CCCAGC	1 cut(s)	1083
BshFI	GGCC	3 cut(s)	50, 335, 822
BshNI	GGYRCC	1 cut(s)	1466
BsiHKAI	GWGCWC	1 cut(s)	784
BsiSI	CCGG	1 cut(s)	872
BslI	CCNNNNNNNGG	3 cut(s)	331, 488, 1276
BsmAI	GTCTC	6 cut(s)	84, 237, 382, 463, 711, 1195
BsmBI	CGTCTC	1 cut(s)	463
BsmI	GAATGC	2 cut(s)	986, 1423
BsnI	GGCC	3 cut(s)	50, 335, 822
Bso31I	GGTCTC	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	606, 784
Bsp13I	TCCGGA	1 cut(s)	871
Bsp1407I	TGTACA	4 cut(s)	96, 807, 1027, 1520
Bsp143I	GATC	4 cut(s)	266, 425, 868, 1118
BspACI	CCGC	3 cut(s)	716, 1174, 1375
BspANI	GGCC	3 cut(s)	50, 335, 822
BspCNI	CTCAG	2 cut(s)	99, 229
BspEI	TCCGGA	1 cut(s)	871
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	4 cut(s)	6, 427, 870, 1468
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	1045
BspPI	GGATC	6 cut(s)	274, 420, 433, 863, 876, 1126
BspT104I	TTCGAA	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	1466
BspTNI	GGTCTC	1 cut(s)	237
BsrBI	CCGCTC	1 cut(s)	1174
BsrDI	GCAATG	2 cut(s)	711, 1303
BsrGI	TGTACA	4 cut(s)	96, 807, 1027, 1520
BsrI	ACTGG	5 cut(s)	9, 268, 796, 1195, 1352
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	4 cut(s)	266, 425, 868, 1118
BssNI	GRCGYC	1 cut(s)	472
BssSI	CACGAG	2 cut(s)	543, 783
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	2 cut(s)	543, 783
Bst2UI	CCWGG	4 cut(s)	216, 248, 477, 1408
Bst4CI	ACNGT	4 cut(s)	305, 705, 851, 905
Bst6I	CTCTTC	2 cut(s)	343, 1422
BstACI	GRCGYC	1 cut(s)	472
BstAUI	TGTACA	4 cut(s)	96, 807, 1027, 1520
BstBAI	YACGTR	1 cut(s)	958
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	641, 1452
BstDEI	CTNAG	8 cut(s)	86, 237, 513, 613, 842, 921, 1099, 1108
BstF5I	GGATG	7 cut(s)	533, 657, 724, 1004, 1264, 1270, 1285
BstHHI	GCGC	2 cut(s)	776, 1450
BstKTI	GATC	4 cut(s)	269, 428, 871, 1121
BstMAI	GTCTC	6 cut(s)	84, 237, 382, 463, 711, 1195
BstMBI	GATC	4 cut(s)	266, 425, 868, 1118
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNI	CCWGG	4 cut(s)	216, 248, 477, 1408
BstNSI	RCATGY	3 cut(s)	780, 937, 1009
BstSCI	CCNGG	4 cut(s)	214, 246, 475, 1406
BstSFI	CTRYAG	3 cut(s)	142, 441, 450
BstSLI	GKGCMC	1 cut(s)	606
BstV1I	GCAGC	3 cut(s)	481, 716, 773
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	2 cut(s)	425, 868
BstYI	RGATCY	2 cut(s)	425, 868
BsuRI	GGCC	3 cut(s)	50, 335, 822
BtsCI	GGATG	7 cut(s)	533, 657, 724, 1004, 1264, 1270, 1285
BtsI	GCAGTG	2 cut(s)	231, 1016
BtsIMutI	CAGTG	5 cut(s)	231, 310, 701, 1016, 1188
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	2 cut(s)	641, 1452
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	2 cut(s)	776, 1450
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	2 cut(s)	446, 1294
CsiI	ACCWGGT	2 cut(s)	214, 246
Csp6I	GTAC	7 cut(s)	63, 97, 353, 808, 1028, 1467, 1521
CviAII	CATG	7 cut(s)	329, 406, 777, 887, 934, 1006, 1508
CviQI	GTAC	7 cut(s)	63, 97, 353, 808, 1028, 1467, 1521
DdeI	CTNAG	8 cut(s)	86, 237, 513, 613, 842, 921, 1099, 1108
DpnI	GATC	4 cut(s)	268, 427, 870, 1120
DpnII	GATC	4 cut(s)	266, 425, 868, 1118
DraI	TTTAAA	1 cut(s)	37
DriI	GACNNNNNGTC	1 cut(s)	959
Eam1104I	CTCTTC	2 cut(s)	343, 1422
Eam1105I	GACNNNNNGTC	1 cut(s)	959
EarI	CTCTTC	2 cut(s)	343, 1422
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	2 cut(s)	50, 822
Eco31I	GGTCTC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	1348
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	87
Eco72I	CACGTG	1 cut(s)	958
EcoRII	CCWGG	4 cut(s)	214, 246, 475, 1406
EcoRV	GATATC	1 cut(s)	1348
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	7 cut(s)	332, 409, 780, 890, 937, 1009, 1511
FatI	CATG	7 cut(s)	328, 405, 776, 886, 933, 1005, 1507
Fnu4HI	GCNGC	3 cut(s)	495, 730, 762
FokI	GGATG	7 cut(s)	520, 644, 731, 1011, 1271, 1277, 1292
Fsp4HI	GCNGC	3 cut(s)	495, 730, 762
FspBI	CTAG	2 cut(s)	498, 1223
FspI	TGCGCA	1 cut(s)	775
GlaI	GCGC	2 cut(s)	775, 1449
GluI	GCNGC	3 cut(s)	495, 730, 762
GsaI	CCCAGC	1 cut(s)	1087
GsuI	CTGGAG	1 cut(s)	1006
HaeIII	GGCC	3 cut(s)	50, 335, 822
HapII	CCGG	1 cut(s)	872
HgaI	GACGC	2 cut(s)	446, 1294
HhaI	GCGC	2 cut(s)	776, 1450
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	7 cut(s)	332, 409, 780, 890, 937, 1009, 1511
Hin6I	GCGC	2 cut(s)	774, 1448
HinP1I	GCGC	2 cut(s)	774, 1448
HinfI	GANTC	3 cut(s)	388, 521, 1066
HpaII	CCGG	1 cut(s)	872
HphI	GGTGA	2 cut(s)	874, 1453
Hpy166II	GTNNAC	3 cut(s)	355, 808, 810
Hpy188I	TCNGA	5 cut(s)	77, 89, 577, 693, 1243
Hpy8I	GTNNAC	3 cut(s)	355, 808, 810
Hpy99I	CGWCG	1 cut(s)	1288
HpyAV	CCTTC	2 cut(s)	812, 1405
HpyCH4III	ACNGT	4 cut(s)	305, 705, 851, 905
HpyCH4IV	ACGT	2 cut(s)	472, 957
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	8 cut(s)	86, 237, 513, 613, 842, 921, 1099, 1108
HpySE526I	ACGT	2 cut(s)	472, 957
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	7 cut(s)	332, 409, 780, 890, 937, 1009, 1511
HspAI	GCGC	2 cut(s)	774, 1448
Kpn2I	TCCGGA	1 cut(s)	871
KpnI	GGTACC	1 cut(s)	1470
Kzo9I	GATC	4 cut(s)	266, 425, 868, 1118
LmnI	GCTCC	3 cut(s)	10, 121, 491
Lsp1109I	GCAGC	3 cut(s)	481, 716, 773
LweI	GCATC	8 cut(s)	50, 377, 542, 1216, 1255, 1270, 1313, 1321
MabI	ACCWGGT	2 cut(s)	214, 246
MaeI	CTAG	2 cut(s)	498, 1223
MaeII	ACGT	2 cut(s)	472, 957
MaeIII	GTNAC	4 cut(s)	389, 845, 1001, 1216
MalI	GATC	4 cut(s)	268, 427, 870, 1120
MbiI	CCGCTC	1 cut(s)	1174
MboI	GATC	4 cut(s)	266, 425, 868, 1118
MboII	GAAGA	5 cut(s)	80, 360, 845, 941, 1439
MflI	RGATCY	2 cut(s)	425, 868
MhlI	GDGCHC	2 cut(s)	606, 784
MluCI	AATT	8 cut(s)	57, 115, 317, 652, 1038, 1248, 1435, 1503
MlyI	GAGTC	3 cut(s)	397, 515, 1060
MroI	TCCGGA	1 cut(s)	871
MroXI	GAANNNNTTC	1 cut(s)	837
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	1 cut(s)	1296
MspI	CCGG	1 cut(s)	872
MspR9I	CCNGG	4 cut(s)	216, 248, 477, 1408
Mva1269I	GAATGC	2 cut(s)	986, 1423
MvaI	CCWGG	4 cut(s)	216, 248, 477, 1408
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NdeII	GATC	4 cut(s)	266, 425, 868, 1118
NlaIII	CATG	7 cut(s)	332, 409, 780, 890, 937, 1009, 1511
NlaIV	GGNNCC	4 cut(s)	6, 427, 870, 1468
NmuCI	GTSAC	3 cut(s)	389, 1001, 1216
NsbI	TGCGCA	1 cut(s)	775
NspI	RCATGY	3 cut(s)	780, 937, 1009
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	405
PceI	AGGCCT	2 cut(s)	50, 822
PctI	GAATGC	2 cut(s)	986, 1423
PdmI	GAANNNNTTC	1 cut(s)	837
PflMI	CCANNNNNTGG	1 cut(s)	488
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	496, 731, 763
PleI	GAGTC	3 cut(s)	396, 515, 1060
PmaCI	CACGTG	1 cut(s)	958
PmlI	CACGTG	1 cut(s)	958
PpsI	GAGTC	3 cut(s)	396, 515, 1060
Ppu21I	YACGTR	1 cut(s)	958
PsiI	TTATAA	1 cut(s)	570
Psp6I	CCWGG	4 cut(s)	214, 246, 475, 1406
PspCI	CACGTG	1 cut(s)	958
PspFI	CCCAGC	1 cut(s)	1083
PspGI	CCWGG	4 cut(s)	214, 246, 475, 1406
PspN4I	GGNNCC	4 cut(s)	6, 427, 870, 1468
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	2 cut(s)	425, 868
RsaI	GTAC	7 cut(s)	64, 98, 354, 809, 1029, 1468, 1522
RsaNI	GTAC	7 cut(s)	63, 97, 353, 808, 1028, 1467, 1521
RseI	CAYNNNNRTG	1 cut(s)	1296
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	3 cut(s)	495, 730, 762
Sau3AI	GATC	4 cut(s)	266, 425, 868, 1118
Sau96I	GGNCC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	3 cut(s)	397, 515, 1060
ScrFI	CCNGG	4 cut(s)	216, 248, 477, 1408
SduI	GDGCHC	2 cut(s)	606, 784
SexAI	ACCWGGT	2 cut(s)	214, 246
SfaNI	GCATC	8 cut(s)	50, 377, 542, 1216, 1255, 1270, 1313, 1321
SfcI	CTRYAG	3 cut(s)	142, 441, 450
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	1 cut(s)	1296
SmlI	CTYRAG	1 cut(s)	1071
SmoI	CTYRAG	1 cut(s)	1071
Sse9I	AATT	8 cut(s)	57, 115, 317, 652, 1038, 1248, 1435, 1503
SseBI	AGGCCT	2 cut(s)	50, 822
SsiI	CCGC	3 cut(s)	716, 1174, 1375
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	2 cut(s)	498, 1223
StuI	AGGCCT	2 cut(s)	50, 822
StyD4I	CCNGG	4 cut(s)	214, 246, 475, 1406
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	4 cut(s)	305, 705, 851, 905
TaiI	ACGT	2 cut(s)	475, 960
TaqI	TCGA	1 cut(s)	168
TasI	AATT	8 cut(s)	57, 115, 317, 652, 1038, 1248, 1435, 1503
TatI	WGTACW	6 cut(s)	62, 96, 352, 807, 1027, 1520
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	5 cut(s)	231, 310, 708, 1016, 1195
TseFI	GTSAC	3 cut(s)	389, 1001, 1216
TseI	GCWGC	3 cut(s)	494, 729, 761
Tsp45I	GTSAC	3 cut(s)	389, 1001, 1216
TspDTI	ATGAA	8 cut(s)	222, 394, 422, 500, 942, 1300, 1447, 1496
TspRI	CASTG	5 cut(s)	231, 310, 708, 1016, 1195
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	3 cut(s)	1038, 1248, 1503
XceI	RCATGY	3 cut(s)	780, 937, 1009
XmnI	GAANNNNTTC	1 cut(s)	837
XspI	CTAG	2 cut(s)	498, 1223
ZraI	GACGTC	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.