Rmu_sc0007224.1_g000005

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007224.1
OG0000439
Physical Location & Seq
Reverse (-)
19983 .. 21699
1717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007224.1_g000005.1.cds

Sequence Viewer

Length: 744 bp
atgcaaactgcgggtgggtttgcatacgcaccaggtggatcggtcaaggatacttttatggaagaatttttgtcagtgatccaggaacgtaaacaacaccagtacttctattgtaaaaagtgccctcttgaaagttttaggaagaaaaagagttctagcccatgcaaaggccatttattacagaaatttgtaaaggaatgttggtctaaatgtggatgcaacaagaactgtgggaaccggattattcaacaaggcatttctgtcaagctgcaggtgtttttgacacccgaagggaaagggtggggtcttcgaacactggaggacttgccgagaggggcttttgtttgtgagtatgttggagagatactaacaatcacagaactatatgagcgaaatatgcaaagtgctggtaagaggcattcatacacagtgctactagatgcaaactggcgttcaaagggtgtcttgaaagatgaagaggcactttgcttagacgctacagtttatggaaatgttgcaagatgctctgatgctaccttggttcagatccctgttgaagtggagactcctgaccatcactattatcatgttgcccttttcacaacaaggaatgttgctgctatggaagagcttacttgggactatggcattgactttgatgaccatgatcatcctgtgaagccatttccttgtctttgtggaagccaattctgtcgtggcagtgacttcaaagttcaagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

247

Amino Acids

27.99

Weight (kDa)

7.04

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
AciI CCGC 1 cut(s) 11
AclWI GGATC 3 cut(s) 46, 73, 541
AcsI RAATTY 2 cut(s) 65, 185
AdeI CACNNNGTG 1 cut(s) 35
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 167
AgsI TTSAA 7 cut(s) 131, 248, 456, 469, 557, 730, 737
AjnI CCWGG 2 cut(s) 31, 81
AluBI AGCT 2 cut(s) 268, 631
AluI AGCT 2 cut(s) 268, 631
Alw26I GTCTC 1 cut(s) 557
AlwI GGATC 3 cut(s) 46, 73, 541
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 268, 617
ApoI RAATTY 2 cut(s) 65, 185
AsuII TTCGAA 1 cut(s) 310
BaeGI GKGCMC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 255, 604
BccI CCATC 1 cut(s) 582
BciT130I CCWGG 2 cut(s) 33, 83
BciVI GTATCC 1 cut(s) 43
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 2 cut(s) 156, 437
BfmI CTRYAG 2 cut(s) 269, 498
BfuAI ACCTGC 1 cut(s) 262
BfuI GTATCC 1 cut(s) 43
BisI GCNGC 2 cut(s) 269, 618
BlsI GCNGC 2 cut(s) 270, 619
BmcAI AGTACT 1 cut(s) 104
Bme1390I CCNGG 2 cut(s) 33, 83
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 2 cut(s) 33, 83
BmsI GCATC 4 cut(s) 206, 430, 512, 520
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 338
Bpu14I TTCGAA 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 537
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 100, 321, 452
BseBI CCWGG 2 cut(s) 33, 83
BseDI CCNNGG 1 cut(s) 537
BseGI GGATG 2 cut(s) 221, 670
BseLI CCNNNNNNNGG 1 cut(s) 167
BseNI ACTGG 3 cut(s) 100, 321, 452
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 2 cut(s) 255, 604
BshFI GGCC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 1 cut(s) 653
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 38, 78, 546, 667
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 236
BspMAI CTGCAG 1 cut(s) 273
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 3 cut(s) 46, 73, 541
BspQI GCTCTTC 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 310
BsrI ACTGG 3 cut(s) 100, 321, 452
BssECI CCNNGG 1 cut(s) 537
BssMI GATC 4 cut(s) 38, 78, 546, 667
BssT1I CCWWGG 1 cut(s) 537
Bst2UI CCWGG 2 cut(s) 33, 83
Bst4CI ACNGT 3 cut(s) 230, 430, 502
Bst6I CTCTTC 2 cut(s) 471, 621
BstBI TTCGAA 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 490
BstF5I GGATG 2 cut(s) 221, 670
BstKTI GATC 4 cut(s) 41, 81, 549, 670
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 4 cut(s) 38, 78, 546, 667
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNI CCWGG 2 cut(s) 33, 83
BstSCI CCNGG 2 cut(s) 31, 81
BstSFI CTRYAG 2 cut(s) 269, 498
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 2 cut(s) 255, 604
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 546
BstYI RGATCY 1 cut(s) 546
BsuI GTATCC 1 cut(s) 43
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 221, 670
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 4 cut(s) 81, 314, 435, 727
BveI ACCTGC 1 cut(s) 262
CseI GACGC 1 cut(s) 503
CsiI ACCWGGT 1 cut(s) 31
Csp6I GTAC 1 cut(s) 103
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviAII CATG 4 cut(s) 162, 587, 665, 741
CviJI RGCY 7 cut(s) 159, 171, 268, 338, 631, 682, 705
CviKI_1 RGCY 7 cut(s) 159, 171, 268, 338, 631, 682, 705
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 490
DpnI GATC 4 cut(s) 40, 80, 548, 669
DpnII GATC 4 cut(s) 38, 78, 546, 667
DraIII CACNNNGTG 1 cut(s) 35
Eam1104I CTCTTC 2 cut(s) 471, 621
EarI CTCTTC 2 cut(s) 471, 621
Eco130I CCWWGG 1 cut(s) 537
EcoRII CCWGG 2 cut(s) 31, 81
EcoT14I CCWWGG 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 4 cut(s) 165, 590, 668, 744
FalI AAGNNNNNCTT 4 cut(s) 449, 481, 468, 500
FaqI GGGAC 1 cut(s) 653
FatI CATG 4 cut(s) 161, 586, 664, 740
FauI CCCGC 1 cut(s) 4
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 269, 618
FokI GGATG 2 cut(s) 228, 657
Fsp4HI GCNGC 2 cut(s) 269, 618
FspBI CTAG 2 cut(s) 156, 437
GluI GCNGC 2 cut(s) 269, 618
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 238
HgaI GACGC 1 cut(s) 503
Hin1II CATG 4 cut(s) 165, 590, 668, 744
HinfI GANTC 1 cut(s) 565
HpaII CCGG 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 92
Hpy188I TCNGA 2 cut(s) 529, 546
Hpy188III TCNNGA 3 cut(s) 128, 466, 569
Hpy8I GTNNAC 1 cut(s) 92
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 3 cut(s) 230, 430, 502
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 8 cut(s) 4, 23, 165, 219, 271, 400, 443, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 1 cut(s) 490
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 4 cut(s) 165, 590, 668, 744
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 4 cut(s) 38, 78, 546, 667
LguI GCTCTTC 1 cut(s) 621
Lsp1109I GCAGC 2 cut(s) 255, 604
LweI GCATC 4 cut(s) 206, 430, 512, 520
MabI ACCWGGT 1 cut(s) 31
MaeI CTAG 2 cut(s) 156, 437
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 722
MalI GATC 4 cut(s) 40, 80, 548, 669
MboI GATC 4 cut(s) 38, 78, 546, 667
MboII GAAGA 5 cut(s) 74, 154, 299, 488, 638
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 3 cut(s) 65, 185, 707
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 1 cut(s) 337
MnlI CCTC 5 cut(s) 135, 313, 326, 408, 472
MspI CCGG 1 cut(s) 238
MspR9I CCNGG 2 cut(s) 33, 83
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 2 cut(s) 33, 83
MwoI GCNNNNNNNGC 1 cut(s) 397
NdeII GATC 4 cut(s) 38, 78, 546, 667
NlaIII CATG 4 cut(s) 165, 590, 668, 744
NlaIV GGNNCC 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 722
NspV TTCGAA 1 cut(s) 310
PaqCI CACCTGC 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 621
PctI GAATGC 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 81
PkrI GCNGC 2 cut(s) 270, 619
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
Psp6I CCWGG 2 cut(s) 31, 81
PspGI CCWGG 2 cut(s) 31, 81
PspN4I GGNNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 273
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SapI GCTCTTC 1 cut(s) 621
SatI GCNGC 2 cut(s) 269, 618
Sau3AI GATC 4 cut(s) 38, 78, 546, 667
ScaI AGTACT 1 cut(s) 104
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 2 cut(s) 33, 83
SduI GDGCHC 1 cut(s) 125
SetI ASST 6 cut(s) 37, 91, 270, 276, 539, 633
SexAI ACCWGGT 1 cut(s) 31
SfaNI GCATC 4 cut(s) 206, 430, 512, 520
SfcI CTRYAG 2 cut(s) 269, 498
SfuI TTCGAA 1 cut(s) 310
Sse9I AATT 3 cut(s) 65, 185, 707
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 156, 437
StyD4I CCNGG 2 cut(s) 31, 81
StyI CCWWGG 1 cut(s) 537
TaaI ACNGT 3 cut(s) 230, 430, 502
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 310
TaqII GACCGA 1 cut(s) 31
TasI AATT 3 cut(s) 65, 185, 707
TatI WGTACW 1 cut(s) 102
TscAI CASTG 4 cut(s) 81, 321, 435, 727
TseFI GTSAC 1 cut(s) 722
TseI GCWGC 2 cut(s) 268, 617
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 2 cut(s) 411, 489
TspRI CASTG 4 cut(s) 81, 321, 435, 727
XapI RAATTY 2 cut(s) 65, 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 713
XspI CTAG 2 cut(s) 156, 437
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.