Rorug05G0517600

Histone-lysine n-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
70194486 .. 70196711
2226 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0517600.1

Sequence Viewer

Length: 1371 bp
ATGGATTCCGTCACCATAGGACAACCAACCGGCGTCTGCCACATAGTAGCCATGCCCCATCCCGGCCGGGGTCACATAAACCCTATGATGAACCTCTGCAACTTGCTAGTTTCCCAAAAGAGTGATATTCTAATAACCTTCGTCCTCACAGAAGAGTGGCTCGGCTTAATTGGGTCTGAAGCCAAGCCGGACAACATTCGCTTTGCCACAATCCCTAATGTGGTCCCATCGGAGAAGGAACGTGCCGCCGATATGGTTGTGTTCTTTGAAGCCGTCATGACCAAAATGGAAGTTCCGTTTGAGCAACTCCTGGAGGTTCTCGAGCCACCACCTAGTGCCATTGTGGCTGACACTTTCCTGCCTTGGGCAGTCGCCGTCGGCAACCGGAGGAACATTTCTTCGGCGTCGTTTTGGCCAATGACGGGGTCCCATTTCTCCGTGTTCCAGCATTTTCATCTCTTCCAGCAAAATGGACACTTCCCAATTGACTTGTTAGAGAAGGGCAATGAACGTGTTGACTACATCCCAGGAGTTTCTTCCATACGGTTAGCGGACACTACTAATTTCATTGATGGAAGCCAATCAAAAATTCTAGACAATATCCTCAAGGATTTTTCTTGGGTGCCCAAAGCACAATATCTCTTTGTCACCTCCATCTATGAGCTTGAAACCCAAGTGATTGATGCTATAAGATCAGAACTCTCACTACCAGTTTACACAATAGGCCCATTACTACCTTCCTTCAAAGCTATCAGCTCCACTAGTAATAACCATCTACAATGGTTGGATTCTCAACCTTGTAGCTCTGTTTTATATATCTCTATGGGAAGCTTTCTTTCAGTTTCAAGTGCTCAAATGGATGAGATCGCAGTTGGTTTGCGAAAGAGTGGTGTTCGATTCTTTTGGGTTGCTCGCACTGAAACGAATAGGTTACAAGAGGTTTGTGGTGATATGGGGTTAGTTGTTCCCTGGTGTGACCAGTTTAGAGTGTTGTGCCATTCTTCTGTTGGTGGGTATTGGTCACATTGTGGATGGAACTCAGTTAGAGAAGGTGTTTTTGGAGGTGTTCCTTTTCTTACCTTTCCCATAACTTTCGATCAAGGTACAAATAGTAAAGTGGTTGTGGAGGATTGGAAAATTGGGTGGAGGGTGAAGAGTACTGAGGCGAAAATCGACCATTTGGTGACAAGTGAGGAAATTGCAGTGTTAGTGAAAAAATTTATGGATTTGGAGGATGATGAAGGGAAAGAATTGAGAAGGAGAACAAGTGAACTCCAACAGATATGGAAAGGTGCCATTGCAGAAGGCGGTTCAACTAAAACTGACATCAATGCGTTCATTAGAGACATTTCACAGAGCCTTGAGGGTTAA

Protein Analysis

456

Amino Acids

50.91

Weight (kDa)

5.23

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 265 - 379 1.8e-14 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 622, 1292
AciI CCGC 3 cut(s) 246, 551, 1308
AcoI YGGCCR 2 cut(s) 64, 413
AcsI RAATTY 2 cut(s) 588, 1217
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 2 cut(s) 33, 404
AdeI CACNNNGTG 2 cut(s) 335, 1028
AfaI GTAC 2 cut(s) 1105, 1159
AfiI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 5 cut(s) 269, 668, 745, 846, 1314
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 3 cut(s) 309, 526, 968
AjuI GAANNNNNNNTTGG 4 cut(s) 573, 605, 1041, 1073
AluBI AGCT 5 cut(s) 664, 749, 756, 804, 831
AluI AGCT 5 cut(s) 664, 749, 756, 804, 831
Alw21I GWGCWC 1 cut(s) 853
Alw26I GTCTC 1 cut(s) 1338
Ama87I CYCGRG 1 cut(s) 320
AoxI GGCC 3 cut(s) 64, 413, 724
ApoI RAATTY 2 cut(s) 588, 1217
AspS9I GGNCC 3 cut(s) 223, 426, 725
AsuC2I CCSGG 2 cut(s) 63, 68
AsuHPI GGTGA 5 cut(s) 4, 640, 959, 1162, 1195
AvaI CYCGRG 1 cut(s) 320
AvaII GGWCC 2 cut(s) 223, 426
BaeGI GKGCMC 1 cut(s) 627
BalI TGGCCA 1 cut(s) 415
BanI GGYRCC 2 cut(s) 622, 1292
Bbv12I GWGCWC 1 cut(s) 853
BccI CCATC 6 cut(s) 66, 235, 566, 662, 780, 1026
BceAI ACGGC 2 cut(s) 257, 359
BciT130I CCWGG 3 cut(s) 311, 528, 970
BcnI CCSGG 2 cut(s) 63, 68
BcoDI GTCTC 1 cut(s) 1338
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 4 cut(s) 107, 333, 593, 762
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
BmcAI AGTACT 1 cut(s) 1159
Bme1390I CCNGG 5 cut(s) 63, 68, 311, 528, 970
Bme18I GGWCC 2 cut(s) 223, 426
BmeT110I CYCGRG 1 cut(s) 320
BmgT120I GGNCC 3 cut(s) 223, 426, 725
BmiI GGNNCC 5 cut(s) 225, 427, 428, 624, 1294
BmrFI CCNGG 5 cut(s) 63, 68, 311, 528, 970
BmsI GCATC 1 cut(s) 673
BpmI CTGGAG 1 cut(s) 332
BpuEI CTTGAG 1 cut(s) 590
BpuMI CCSGG 2 cut(s) 63, 68
BsaHI GRCGYC 2 cut(s) 33, 404
BsaJI CCNNGG 4 cut(s) 67, 362, 526, 968
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 1252, 1282
Bsc4I CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
Bse118I RCCGGY 1 cut(s) 29
Bse1I ACTGG 2 cut(s) 710, 979
Bse3DI GCAATG 2 cut(s) 511, 1296
BseBI CCWGG 3 cut(s) 311, 528, 970
BseDI CCNNGG 4 cut(s) 67, 362, 526, 968
BseGI GGATG 5 cut(s) 58, 522, 865, 1037, 1240
BseLI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
BseMI GCAATG 2 cut(s) 511, 1296
BseMII CTCAG 2 cut(s) 1053, 1152
BseNI ACTGG 2 cut(s) 710, 979
BseSI GKGCMC 1 cut(s) 627
BseX3I CGGCCG 1 cut(s) 64
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 66, 415, 726
BshNI GGYRCC 2 cut(s) 622, 1292
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 320
BsiSI CCGG 5 cut(s) 30, 63, 67, 188, 385
BslFI GGGAC 2 cut(s) 209, 412
BslI CCNNNNNNNGG 5 cut(s) 62, 68, 220, 364, 422
BsmAI GTCTC 1 cut(s) 1338
BsmFI GGGAC 2 cut(s) 209, 412
BsnI GGCC 3 cut(s) 66, 415, 726
BsoBI CYCGRG 1 cut(s) 320
Bsp1286I GDGCHC 2 cut(s) 627, 853
Bsp143I GATC 3 cut(s) 692, 864, 1096
BspACI CCGC 3 cut(s) 246, 551, 1308
BspANI GGCC 3 cut(s) 66, 415, 726
BspCNI CTCAG 2 cut(s) 1052, 1153
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 5 cut(s) 225, 427, 428, 624, 1294
BspT107I GGYRCC 2 cut(s) 622, 1292
BsrDI GCAATG 2 cut(s) 511, 1296
BsrFI RCCGGY 1 cut(s) 29
BsrI ACTGG 2 cut(s) 710, 979
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 4 cut(s) 67, 362, 526, 968
BssMI GATC 3 cut(s) 692, 864, 1096
BssNI GRCGYC 2 cut(s) 33, 404
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 3 cut(s) 311, 528, 970
Bst4CI ACNGT 1 cut(s) 546
Bst6I CTCTTC 3 cut(s) 147, 464, 1148
BstACI GRCGYC 2 cut(s) 33, 404
BstC8I GCNNGC 1 cut(s) 913
BstDEI CTNAG 2 cut(s) 1039, 1161
BstF5I GGATG 5 cut(s) 58, 522, 865, 1037, 1240
BstKTI GATC 3 cut(s) 695, 867, 1099
BstMAI GTCTC 1 cut(s) 1338
BstMBI GATC 3 cut(s) 692, 864, 1096
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstNI CCWGG 3 cut(s) 311, 528, 970
BstSCI CCNGG 5 cut(s) 61, 66, 309, 526, 968
BstSLI GKGCMC 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 470
BstZI CGGCCG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 66, 415, 726
BtsCI GGATG 5 cut(s) 58, 522, 865, 1037, 1240
BtsI GCAGTG 1 cut(s) 1209
BtsIMutI CAGTG 2 cut(s) 915, 1209
Cac8I GCNNGC 1 cut(s) 913
CciI TCATGA 1 cut(s) 276
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 3 cut(s) 223, 426, 725
CseI GACGC 2 cut(s) 22, 393
Csp6I GTAC 2 cut(s) 1104, 1158
CviAII CATG 2 cut(s) 52, 277
CviQI GTAC 2 cut(s) 1104, 1158
DdeI CTNAG 2 cut(s) 1039, 1161
DpnI GATC 3 cut(s) 694, 866, 1098
DpnII GATC 3 cut(s) 692, 864, 1096
DraIII CACNNNGTG 2 cut(s) 335, 1028
EaeI YGGCCR 2 cut(s) 64, 413
EagI CGGCCG 1 cut(s) 64
Eam1104I CTCTTC 3 cut(s) 147, 464, 1148
EarI CTCTTC 3 cut(s) 147, 464, 1148
EclXI CGGCCG 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 223, 426
Eco52I CGGCCG 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 198
Eco88I CYCGRG 1 cut(s) 320
EcoO109I RGGNCCY 1 cut(s) 426
EcoRII CCWGG 3 cut(s) 309, 526, 968
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 2 cut(s) 55, 280
FaqI GGGAC 2 cut(s) 209, 412
FatI CATG 2 cut(s) 51, 276
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 5 cut(s) 45, 509, 872, 1044, 1247
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 4 cut(s) 107, 333, 593, 762
GluI GCNGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 332
HaeIII GGCC 3 cut(s) 66, 415, 726
HapII CCGG 5 cut(s) 30, 63, 67, 188, 385
HgaI GACGC 2 cut(s) 22, 393
Hin1I GRCGYC 2 cut(s) 33, 404
Hin1II CATG 2 cut(s) 55, 280
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 829
HinfI GANTC 3 cut(s) 5, 788, 897
HpaII CCGG 5 cut(s) 30, 63, 67, 188, 385
HphI GGTGA 5 cut(s) 4, 640, 959, 1162, 1195
Hpy166II GTNNAC 3 cut(s) 517, 715, 1271
Hpy188I TCNGA 3 cut(s) 178, 232, 697
Hpy188III TCNNGA 3 cut(s) 277, 320, 593
Hpy8I GTNNAC 3 cut(s) 517, 715, 1271
Hpy99I CGWCG 2 cut(s) 380, 409
HpyAV CCTTC 9 cut(s) 148, 229, 493, 747, 751, 1043, 1235, 1251, 1298
HpyCH4III ACNGT 1 cut(s) 546
HpyCH4IV ACGT 2 cut(s) 241, 511
HpyCH4V TGCA 3 cut(s) 99, 1202, 1301
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 1039, 1161
HpySE526I ACGT 2 cut(s) 241, 511
Hsp92I GRCGYC 2 cut(s) 33, 404
Hsp92II CATG 2 cut(s) 55, 280
KflI GGGWCCC 1 cut(s) 426
Kzo9I GATC 3 cut(s) 692, 864, 1096
LmnI GCTCC 1 cut(s) 761
LweI GCATC 1 cut(s) 673
MaeI CTAG 4 cut(s) 107, 333, 593, 762
MaeII ACGT 2 cut(s) 241, 511
MaeIII GTNAC 7 cut(s) 10, 71, 646, 930, 974, 1020, 1183
MalI GATC 3 cut(s) 694, 866, 1098
MboI GATC 3 cut(s) 692, 864, 1096
MboII GAAGA 6 cut(s) 164, 390, 451, 528, 993, 1165
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 627, 853
MlsI TGGCCA 1 cut(s) 415
MluCI AATT 8 cut(s) 168, 483, 562, 588, 1137, 1197, 1217, 1250
MluNI TGGCCA 1 cut(s) 415
MmeI TCCRAC 2 cut(s) 765, 1300
Mox20I TGGCCA 1 cut(s) 415
MscI TGGCCA 1 cut(s) 415
MseI TTAA 2 cut(s) 167, 1369
Msp20I TGGCCA 1 cut(s) 415
MspI CCGG 5 cut(s) 30, 63, 67, 188, 385
MspR9I CCNGG 5 cut(s) 63, 68, 311, 528, 970
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 3 cut(s) 311, 528, 970
MwoI GCNNNNNNNGC 1 cut(s) 344
NciI CCSGG 2 cut(s) 63, 68
NdeII GATC 3 cut(s) 692, 864, 1096
NlaIII CATG 2 cut(s) 55, 280
NlaIV GGNNCC 5 cut(s) 225, 427, 428, 624, 1294
NmeAIII GCCGAG 1 cut(s) 141
NmuCI GTSAC 6 cut(s) 10, 71, 646, 974, 1020, 1183
PaeR7I CTCGAG 1 cut(s) 320
PagI TCATGA 1 cut(s) 276
PfeI GAWTC 3 cut(s) 5, 788, 897
PflFI GACNNNGTC 1 cut(s) 424
PfoI TCCNGGA 1 cut(s) 309
PkrI GCNGC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 426
Psp6I CCWGG 3 cut(s) 309, 526, 968
PspGI CCWGG 3 cut(s) 309, 526, 968
PspN4I GGNNCC 5 cut(s) 225, 427, 428, 624, 1294
PspPI GGNCC 3 cut(s) 223, 426, 725
PspPPI RGGWCCY 1 cut(s) 426
PsrI GAACNNNNNNTAC 2 cut(s) 690, 722
PsyI GACNNNGTC 1 cut(s) 424
RsaI GTAC 2 cut(s) 1105, 1159
RsaNI GTAC 2 cut(s) 1104, 1158
SaqAI TTAA 2 cut(s) 167, 1369
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 3 cut(s) 692, 864, 1096
Sau96I GGNCC 3 cut(s) 223, 426, 725
ScaI AGTACT 1 cut(s) 1159
ScrFI CCNGG 5 cut(s) 63, 68, 311, 528, 970
SduI GDGCHC 2 cut(s) 627, 853
SfaNI GCATC 1 cut(s) 673
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 223, 426
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 3 cut(s) 320, 605, 1361
SmoI CTYRAG 3 cut(s) 320, 605, 1361
SpeI ACTAGT 1 cut(s) 761
Sse9I AATT 8 cut(s) 168, 483, 562, 588, 1137, 1197, 1217, 1250
SsiI CCGC 3 cut(s) 246, 551, 1308
SspMI CTAG 4 cut(s) 107, 333, 593, 762
StyD4I CCNGG 5 cut(s) 61, 66, 309, 526, 968
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 546
TaiI ACGT 2 cut(s) 244, 514
TaqI TCGA 4 cut(s) 321, 895, 1095, 1173
TasI AATT 8 cut(s) 168, 483, 562, 588, 1137, 1197, 1217, 1250
TatI WGTACW 1 cut(s) 1157
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 3 cut(s) 5, 788, 897
Tru1I TTAA 2 cut(s) 167, 1369
Tru9I TTAA 2 cut(s) 167, 1369
TscAI CASTG 2 cut(s) 922, 1209
TseFI GTSAC 6 cut(s) 10, 71, 646, 974, 1020, 1183
Tsp45I GTSAC 6 cut(s) 10, 71, 646, 974, 1020, 1183
TspDTI ATGAA 6 cut(s) 104, 443, 522, 556, 1254, 1327
TspGWI ACGGA 2 cut(s) 285, 427
TspRI CASTG 2 cut(s) 922, 1209
Tth111I GACNNNGTC 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 223, 426
XapI RAATTY 2 cut(s) 588, 1217
XbaI TCTAGA 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 1004
XhoI CTCGAG 1 cut(s) 320
XspI CTAG 4 cut(s) 107, 333, 593, 762
ZrmI AGTACT 1 cut(s) 1159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.