MD12G1043600.v1.1

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000439
Physical Location & Seq
Reverse (-)
4922293 .. 4924580
2288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1043600.v1.1.491

Sequence Viewer

Length: 429 bp
ATGAACTGTGGAAACCGGATTGTTCAGCAAGGCATCAGCGTGAAGTTGCAGGTATTTTTGACACCTGAAGGGAAAGGATGGGGTCTTAGAACACTGGAGGACTTGCCAAGAGGATCTTTTGTTTGTGAGCATGTTGGAGAGATATTAACCAACACAGAACGACATGAGCGAAATGTGTCGAGTACTGGTAAGAAGCATGCATACTACGCAGTGCAACTAGATGCGGCCTGGGGTTCGAAGGGTATCTTGGAAGATGAAGAGGCACTTTGCTTGGACGCTACTGCTTATGGAAATGTTGCAAGATTTATCAATCACAGGTGTTCGGATGCTACCTTGGTTGAGATTCCTGTTGAAGTGGAGACCCCGGATCGTCACCATCATCATGGACAAAACAAAACAAAACAAACAAAACATTCCCTCCAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

143

Amino Acids

15.88

Weight (kDa)

6.49

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 26 - 111 3.4e-12 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 40
AciI CCGC 1 cut(s) 224
AclWI GGATC 2 cut(s) 121, 375
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 184
AgsI TTSAA 1 cut(s) 353
AjnI CCWGG 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 2 cut(s) 121, 375
AoxI GGCC 1 cut(s) 225
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 1 cut(s) 365
AsuII TTCGAA 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 185, 217
BccI CCATC 2 cut(s) 72, 384
BciT130I CCWGG 1 cut(s) 229
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 40
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 229, 365
BmrFI CCNGG 2 cut(s) 229, 365
BmsI GCATC 3 cut(s) 42, 211, 316
BpmI CTGGAG 1 cut(s) 116
Bpu14I TTCGAA 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 365
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 3 cut(s) 228, 333, 363
BsaWI WCCGGW 1 cut(s) 15
BsaXI ACNNNNNCTCC 1 cut(s) 402
Bse1I ACTGG 2 cut(s) 99, 190
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 3 cut(s) 228, 333, 363
BseGI GGATG 2 cut(s) 83, 331
BseNI ACTGG 2 cut(s) 99, 190
BshFI GGCC 1 cut(s) 227
BsiSI CCGG 2 cut(s) 16, 365
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 236
Bsp143I GATC 2 cut(s) 113, 367
BspACI CCGC 1 cut(s) 224
BspANI GGCC 1 cut(s) 227
BspMI ACCTGC 1 cut(s) 40
BspPI GGATC 2 cut(s) 121, 375
BspT104I TTCGAA 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 353
BsrI ACTGG 2 cut(s) 99, 190
BssECI CCNNGG 3 cut(s) 228, 333, 363
BssMI GATC 2 cut(s) 113, 367
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 83, 331
BstKTI GATC 2 cut(s) 116, 370
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 113, 367
BstMWI GCNNNNNNNGC 1 cut(s) 206
BstNI CCWGG 1 cut(s) 229
BstNSI RCATGY 2 cut(s) 134, 200
BstSCI CCNGG 2 cut(s) 227, 363
BstX2I RGATCY 1 cut(s) 113
BstXI CCANNNNNNTGG 1 cut(s) 383
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 1 cut(s) 227
BtsCI GGATG 2 cut(s) 83, 331
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 2 cut(s) 92, 216
BveI ACCTGC 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 198
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 183
CviAII CATG 4 cut(s) 131, 164, 197, 383
CviJI RGCY 1 cut(s) 227
CviKI_1 RGCY 1 cut(s) 227
CviQI GTAC 1 cut(s) 183
DdeI CTNAG 1 cut(s) 86
DpnI GATC 2 cut(s) 115, 369
DpnII GATC 2 cut(s) 113, 367
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 4 cut(s) 134, 167, 200, 386
FaiI YATR 6 cut(s) 132, 165, 198, 202, 288, 384
FalI AAGNNNNNCTT 6 cut(s) 100, 132, 230, 262, 249, 281
FatI CATG 4 cut(s) 130, 163, 196, 382
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 2 cut(s) 90, 338
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 227
HapII CCGG 2 cut(s) 16, 365
HgaI GACGC 1 cut(s) 284
Hin1II CATG 4 cut(s) 134, 167, 200, 386
HinfI GANTC 1 cut(s) 343
HpaII CCGG 2 cut(s) 16, 365
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 1 cut(s) 325
HpyAV CCTTC 2 cut(s) 62, 232
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 4 cut(s) 49, 200, 214, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 206
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 4 cut(s) 134, 167, 200, 386
Kzo9I GATC 2 cut(s) 113, 367
LweI GCATC 3 cut(s) 42, 211, 316
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 371
MalI GATC 2 cut(s) 115, 369
MboI GATC 2 cut(s) 113, 367
MboII GAAGA 2 cut(s) 263, 269
MflI RGATCY 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 91, 104, 253, 428
Mph1103I ATGCAT 1 cut(s) 202
MseI TTAA 2 cut(s) 146, 427
MslI CAYNNNNRTG 2 cut(s) 38, 381
MspI CCGG 2 cut(s) 16, 365
MspR9I CCNGG 2 cut(s) 229, 365
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 206
NciI CCSGG 1 cut(s) 365
NdeII GATC 2 cut(s) 113, 367
NlaIII CATG 4 cut(s) 134, 167, 200, 386
NmuCI GTSAC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 202
NspI RCATGY 2 cut(s) 134, 200
NspV TTCGAA 1 cut(s) 236
PaeI GCATGC 1 cut(s) 200
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 227
PspGI CCWGG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 2 cut(s) 38, 381
SaqAI TTAA 2 cut(s) 146, 427
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 113, 367
ScaI AGTACT 1 cut(s) 184
ScrFI CCNGG 2 cut(s) 229, 365
SetI ASST 4 cut(s) 54, 67, 320, 335
SfaNI GCATC 3 cut(s) 42, 211, 316
SfuI TTCGAA 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 38, 381
SphI GCATGC 1 cut(s) 200
SsiI CCGC 1 cut(s) 224
SspMI CTAG 1 cut(s) 218
StyD4I CCNGG 2 cut(s) 227, 363
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 2 cut(s) 179, 236
TatI WGTACW 1 cut(s) 182
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 2 cut(s) 146, 427
Tru9I TTAA 2 cut(s) 146, 427
TscAI CASTG 2 cut(s) 99, 216
TseFI GTSAC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 17, 270
TspRI CASTG 2 cut(s) 99, 216
XceI RCATGY 2 cut(s) 134, 200
XspI CTAG 1 cut(s) 218
ZrmI AGTACT 1 cut(s) 184
Zsp2I ATGCAT 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.