Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Forward (+)

65679745 .. 65684895

Gene Structure 5151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGGCTCCCAGTAAAACACAGATTGCTAATGCTTTTAAAGCATCAAAGGCCTTGGGAATTAGTACTGAAGAAATCAGACCTGTCCTCAGAGACTTGTACAAATCTTTTCACAAGAATTGGGAGCATATTGAAGCAGACAACTACAGGGTTCTATTTGATAGATACTTCGAAATGAAGGAGGAAGAAGCAGAAAAGAGAGATGAAAAACCAGGTAAAGCAGTGCATTTGGCTGAGGAAGACCAGGTTTCTAAAAGAACTGGATCAAGTTTTGAACTGCCCCTCAAACATTCCACTCACAGTGGAAATGTCCAATTTCCCCGTCATGTGGCCTCTGGAAATGGAAGAGTACACCCTGAAAGAGCATCAGCAGTCTCGCTTACTAGTCACACAAACTACTTCATGAAGCCAAAGAATGAGGGATCCACAAATAATGCTATAGTTTCTGCAGAACAAACCTCAATGAGACGTCCAGGATCAATGAACGGAGCTGCTAGAATACAACGACCTAAGACAGACTCAAATGGTGCGTCCATTTCTCGTGAGGACAAGAAGCCAATCATTTATAAATCAGACATAACCAAATCAACTGAAAAAGTGCCAATATCCTTAGTAGATGATGTTGGAATTGAGAGCTTGCCAAAGTTCAATTACATCCCACAAAACATCATATACCAAAATGCCAATCTGAATATTTCACTGTCTCGCATTGCGGATGAGGATTGCTGCCCAGATTGTTTTGGAGATTGTCTTTCAGCAGCATTTCCTTGCGCTTGTGCTCTTGAAACTGGTGGGGAGTTTGTGTACACACCAGAAGGCCTACTGAAAGAGGATTTTCTAAGTAACCGTATGGCTCTGGTGAGGGAACCGGATAAGCAACCTCATGTTTATTGTCAAGACTGTCCTATTGAGAGGTCTAAGAATGAAGACATGCCTGAAAAATGCAAAGGACACGTGGTCAGGAGGTTTATCAAAGAATGCTGGAGAAAATGTGGATGTGACATGCAGTGTGGAAATCGTGTTGTACAAAGGGGAATTTCGTGCAAGTTGCAGGTGTTCTGGACTCCTCAAGGAAAAGGCTGGGGAGTTAGAACCTTAGAGGTCTTAGAGAAAGGATCATTTGTCTGTGAATATGTCGGGGAGATAATGACTAACACAGAGTTGCATGAGCGGAATATGGAAAGCACTGGTAGTGAGAGACATACATACCCCGTGACACTAGATGCAGATTGGGGGTCAGAACAAATTTTGAGGGATGAGGATGCCCTCTGTCTGGATGCGACGCTACACGGCAATGTTGCAAGGTTCATCAATCATAGATGCTTTGACGCAAACTTGGTTGATATCCCAGTTCAAGTGGAAACTCCTGACCGCCATTATTATCATCTTGCCTTCTTTACTACCAGGAAAGTGAATGCCTTTGAAGAGTTGAATTGGGATTATGGGATTGATTTTGATGATGAAGATCATCCTATTGAGGCATTTCAGTGCAGTTGTGGAAGTCCATACTGCCGAAACATAAACAGAAAGGGAAAACAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

513

Amino Acids

58.3

Weight (kDa)

6.06

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIYLD	PF10440	5 - 61	1e-14	Ubiquitin-binding WIYLD domain
Pre-SET	PF05033	194 - 339	3.1e-12	Pre-SET motif
SET	PF00856	359 - 481	2.3e-17	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	564
AarI	CACCTGC	1 cut(s)	1039
AatII	GACGTC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	1039
AccBSI	CCGCTC	1 cut(s)	1168
AciI	CCGC	4 cut(s)	710, 1168, 1369, 1537
AclWI	GGATC	5 cut(s)	268, 414, 427, 481, 1120
AcsI	RAATTY	2 cut(s)	1032, 1242
AcuI	CTGAAG	1 cut(s)	87
AcvI	CACGTG	1 cut(s)	952
AcyI	GRCGYC	1 cut(s)	466
AfaI	GTAC	5 cut(s)	64, 98, 348, 803, 1023
AfiI	CCNNNNNNNGG	2 cut(s)	325, 1270
AflIII	ACRYGT	1 cut(s)	949
AgsI	TTSAA	7 cut(s)	131, 272, 646, 782, 1352, 1421, 1429
AhdI	GACNNNNNGTC	1 cut(s)	953
AhlI	ACTAGT	1 cut(s)	380
AjnI	CCWGG	4 cut(s)	208, 240, 469, 1400
AluBI	AGCT	2 cut(s)	488, 633
AluI	AGCT	2 cut(s)	488, 633
Alw21I	GWGCWC	1 cut(s)	778
Alw26I	GTCTC	5 cut(s)	84, 376, 457, 705, 1189
AlwI	GGATC	5 cut(s)	268, 414, 427, 481, 1120
AoxI	GGCC	3 cut(s)	48, 327, 814
ApeKI	GCWGC	3 cut(s)	488, 723, 755
ApoI	RAATTY	2 cut(s)	1032, 1242
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
AspLEI	GCGC	1 cut(s)	770
AsuHPI	GGTGA	1 cut(s)	868
AsuII	TTCGAA	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	952
BbsI	GAAGAC	2 cut(s)	243, 930
Bbv12I	GWGCWC	1 cut(s)	778
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	475, 710, 767
BceAI	ACGGC	1 cut(s)	1303
BciT130I	CCWGG	4 cut(s)	210, 242, 471, 1402
BcoDI	GTCTC	5 cut(s)	84, 376, 457, 705, 1189
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	3 cut(s)	381, 492, 1217
BfmI	CTRYAG	3 cut(s)	142, 435, 444
BfuAI	ACCTGC	1 cut(s)	1039
BisI	GCNGC	3 cut(s)	489, 724, 756
BlsI	GCNGC	3 cut(s)	490, 725, 757
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	210, 242, 471, 1402
BmeRI	GACNNNNNGTC	1 cut(s)	953
BmiI	GGNNCC	3 cut(s)	6, 421, 864
BmrFI	CCNGG	4 cut(s)	210, 242, 471, 1402
BmrI	ACTGGG	2 cut(s)	3, 1340
BmsI	GCATC	6 cut(s)	50, 371, 1210, 1249, 1264, 1307
BmuI	ACTGGG	2 cut(s)	3, 1340
BpiI	GAAGAC	2 cut(s)	243, 930
BpmI	CTGGAG	1 cut(s)	1000
Bpu10I	CCTNAGC	1 cut(s)	231
Bpu14I	TTCGAA	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	1050
BsaAI	YACGTR	1 cut(s)	952
BsaBI	GATNNNNATC	1 cut(s)	1461
BsaHI	GRCGYC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	865
BsaXI	ACNNNNNCTCC	4 cut(s)	785, 815, 973, 1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 1270
Bse1I	ACTGG	5 cut(s)	9, 262, 790, 1189, 1346
Bse3DI	GCAATG	2 cut(s)	705, 1297
Bse8I	GATNNNNATC	1 cut(s)	1461
BseBI	CCWGG	4 cut(s)	210, 242, 471, 1402
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	7 cut(s)	651, 718, 998, 1258, 1264, 1279, 1465
BseJI	GATNNNNATC	1 cut(s)	1461
BseLI	CCNNNNNNNGG	2 cut(s)	325, 1270
BseMI	GCAATG	2 cut(s)	705, 1297
BseMII	CTCAG	2 cut(s)	100, 222
BseNI	ACTGG	5 cut(s)	9, 262, 790, 1189, 1346
BseRI	GAGGAG	1 cut(s)	1053
BseXI	GCAGC	3 cut(s)	475, 710, 767
BseYI	CCCAGC	1 cut(s)	1077
BsgI	GTGCAG	1 cut(s)	1507
BshFI	GGCC	3 cut(s)	50, 329, 816
BsiHKAI	GWGCWC	1 cut(s)	778
BsiSI	CCGG	1 cut(s)	866
BslI	CCNNNNNNNGG	2 cut(s)	325, 1270
BsmAI	GTCTC	5 cut(s)	84, 376, 457, 705, 1189
BsmBI	CGTCTC	1 cut(s)	457
BsmI	GAATGC	2 cut(s)	980, 1417
BsnI	GGCC	3 cut(s)	50, 329, 816
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp1407I	TGTACA	3 cut(s)	96, 801, 1021
Bsp143I	GATC	5 cut(s)	260, 419, 473, 1112, 1462
BspACI	CCGC	4 cut(s)	710, 1168, 1369, 1537
BspANI	GGCC	3 cut(s)	50, 329, 816
BspCNI	CTCAG	2 cut(s)	99, 223
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	3 cut(s)	6, 421, 864
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	1039
BspPI	GGATC	5 cut(s)	268, 414, 427, 481, 1120
BspT104I	TTCGAA	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	1168
BsrDI	GCAATG	2 cut(s)	705, 1297
BsrGI	TGTACA	3 cut(s)	96, 801, 1021
BsrI	ACTGG	5 cut(s)	9, 262, 790, 1189, 1346
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	5 cut(s)	260, 419, 473, 1112, 1462
BssNI	GRCGYC	1 cut(s)	466
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	4 cut(s)	210, 242, 471, 1402
Bst4CI	ACNGT	4 cut(s)	299, 699, 845, 899
Bst6I	CTCTTC	2 cut(s)	337, 1416
BstACI	GRCGYC	1 cut(s)	466
BstAUI	TGTACA	3 cut(s)	96, 801, 1021
BstBAI	YACGTR	1 cut(s)	952
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	8 cut(s)	86, 231, 507, 607, 836, 915, 1093, 1102
BstF5I	GGATG	7 cut(s)	651, 718, 998, 1258, 1264, 1279, 1465
BstHHI	GCGC	1 cut(s)	770
BstKTI	GATC	5 cut(s)	263, 422, 476, 1115, 1465
BstMAI	GTCTC	5 cut(s)	84, 376, 457, 705, 1189
BstMBI	GATC	5 cut(s)	260, 419, 473, 1112, 1462
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNI	CCWGG	4 cut(s)	210, 242, 471, 1402
BstNSI	RCATGY	2 cut(s)	931, 1003
BstSCI	CCNGG	4 cut(s)	208, 240, 469, 1400
BstSFI	CTRYAG	3 cut(s)	142, 435, 444
BstV1I	GCAGC	3 cut(s)	475, 710, 767
BstV2I	GAAGAC	2 cut(s)	243, 930
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BsuRI	GGCC	3 cut(s)	50, 329, 816
BtsCI	GGATG	7 cut(s)	651, 718, 998, 1258, 1264, 1279, 1465
BtsI	GCAGTG	2 cut(s)	225, 1010
BtsIMutI	CAGTG	6 cut(s)	225, 304, 695, 1010, 1182, 1490
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	1 cut(s)	635
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	1 cut(s)	770
CseI	GACGC	3 cut(s)	516, 1288, 1334
CsiI	ACCWGGT	2 cut(s)	208, 240
Csp6I	GTAC	5 cut(s)	63, 97, 347, 802, 1022
CviAII	CATG	6 cut(s)	323, 400, 881, 928, 1000, 1163
CviQI	GTAC	5 cut(s)	63, 97, 347, 802, 1022
DdeI	CTNAG	8 cut(s)	86, 231, 507, 607, 836, 915, 1093, 1102
DpnI	GATC	5 cut(s)	262, 421, 475, 1114, 1464
DpnII	GATC	5 cut(s)	260, 419, 473, 1112, 1462
DraI	TTTAAA	1 cut(s)	37
DriI	GACNNNNNGTC	1 cut(s)	953
Eam1104I	CTCTTC	2 cut(s)	337, 1416
Eam1105I	GACNNNNNGTC	1 cut(s)	953
EarI	CTCTTC	2 cut(s)	337, 1416
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	2 cut(s)	50, 816
Eco32I	GATATC	1 cut(s)	1342
Eco57I	CTGAAG	1 cut(s)	87
Eco72I	CACGTG	1 cut(s)	952
EcoRII	CCWGG	4 cut(s)	208, 240, 469, 1400
EcoRV	GATATC	1 cut(s)	1342
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	457
FaeI	CATG	6 cut(s)	326, 403, 884, 931, 1003, 1166
FatI	CATG	6 cut(s)	322, 399, 880, 927, 999, 1162
Fnu4HI	GCNGC	3 cut(s)	489, 724, 756
FokI	GGATG	7 cut(s)	638, 725, 1005, 1265, 1271, 1286, 1452
Fsp4HI	GCNGC	3 cut(s)	489, 724, 756
FspBI	CTAG	3 cut(s)	381, 492, 1217
GlaI	GCGC	1 cut(s)	769
GluI	GCNGC	3 cut(s)	489, 724, 756
GsaI	CCCAGC	1 cut(s)	1081
GsuI	CTGGAG	1 cut(s)	1000
HaeIII	GGCC	3 cut(s)	50, 329, 816
HapII	CCGG	1 cut(s)	866
HgaI	GACGC	3 cut(s)	516, 1288, 1334
HhaI	GCGC	1 cut(s)	770
Hin1I	GRCGYC	1 cut(s)	466
Hin1II	CATG	6 cut(s)	326, 403, 884, 931, 1003, 1166
Hin6I	GCGC	1 cut(s)	768
HinP1I	GCGC	1 cut(s)	768
HinfI	GANTC	2 cut(s)	515, 1060
HpaII	CCGG	1 cut(s)	866
HphI	GGTGA	1 cut(s)	868
Hpy166II	GTNNAC	3 cut(s)	349, 802, 804
Hpy188I	TCNGA	5 cut(s)	77, 89, 571, 687, 1237
Hpy188III	TCNNGA	9 cut(s)	333, 400, 539, 779, 893, 958, 1057, 1271, 1364
Hpy8I	GTNNAC	3 cut(s)	349, 802, 804
Hpy99I	CGWCG	1 cut(s)	1282
HpyAV	CCTTC	3 cut(s)	169, 806, 1399
HpyCH4III	ACNGT	4 cut(s)	299, 699, 845, 899
HpyCH4IV	ACGT	2 cut(s)	466, 951
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	8 cut(s)	86, 231, 507, 607, 836, 915, 1093, 1102
HpySE526I	ACGT	2 cut(s)	466, 951
Hsp92I	GRCGYC	1 cut(s)	466
Hsp92II	CATG	6 cut(s)	326, 403, 884, 931, 1003, 1166
HspAI	GCGC	1 cut(s)	768
Kzo9I	GATC	5 cut(s)	260, 419, 473, 1112, 1462
LmnI	GCTCC	3 cut(s)	10, 121, 485
Lsp1109I	GCAGC	3 cut(s)	475, 710, 767
LweI	GCATC	6 cut(s)	50, 371, 1210, 1249, 1264, 1307
MabI	ACCWGGT	2 cut(s)	208, 240
MaeI	CTAG	3 cut(s)	381, 492, 1217
MaeII	ACGT	2 cut(s)	466, 951
MaeIII	GTNAC	4 cut(s)	383, 839, 995, 1210
MalI	GATC	5 cut(s)	262, 421, 475, 1114, 1464
MbiI	CCGCTC	1 cut(s)	1168
MboI	GATC	5 cut(s)	260, 419, 473, 1112, 1462
MboII	GAAGA	7 cut(s)	80, 194, 248, 354, 935, 1433, 1472
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	778
MluCI	AATT	8 cut(s)	57, 115, 311, 624, 646, 1032, 1242, 1429
MlyI	GAGTC	2 cut(s)	509, 1054
MmeI	TCCRAC	1 cut(s)	601
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	1290, 1483
MspA1I	CMGCKG	1 cut(s)	1537
MspI	CCGG	1 cut(s)	866
MspR9I	CCNGG	4 cut(s)	210, 242, 471, 1402
Mva1269I	GAATGC	2 cut(s)	980, 1417
MvaI	CCWGG	4 cut(s)	210, 242, 471, 1402
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NdeII	GATC	5 cut(s)	260, 419, 473, 1112, 1462
NlaIII	CATG	6 cut(s)	326, 403, 884, 931, 1003, 1166
NlaIV	GGNNCC	3 cut(s)	6, 421, 864
NmuCI	GTSAC	3 cut(s)	383, 995, 1210
NspI	RCATGY	2 cut(s)	931, 1003
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	399
PaqCI	CACCTGC	1 cut(s)	1039
PceI	AGGCCT	2 cut(s)	50, 816
PctI	GAATGC	2 cut(s)	980, 1417
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	3 cut(s)	490, 725, 757
PleI	GAGTC	2 cut(s)	509, 1054
PmaCI	CACGTG	1 cut(s)	952
PmlI	CACGTG	1 cut(s)	952
PpsI	GAGTC	2 cut(s)	509, 1054
Ppu21I	YACGTR	1 cut(s)	952
PsiI	TTATAA	1 cut(s)	564
Psp6I	CCWGG	4 cut(s)	208, 240, 469, 1400
PspCI	CACGTG	1 cut(s)	952
PspFI	CCCAGC	1 cut(s)	1077
PspGI	CCWGG	4 cut(s)	208, 240, 469, 1400
PspN4I	GGNNCC	3 cut(s)	6, 421, 864
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	419
RsaI	GTAC	5 cut(s)	64, 98, 348, 803, 1023
RsaNI	GTAC	5 cut(s)	63, 97, 347, 802, 1022
RseI	CAYNNNNRTG	2 cut(s)	1290, 1483
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	3 cut(s)	489, 724, 756
Sau3AI	GATC	5 cut(s)	260, 419, 473, 1112, 1462
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	2 cut(s)	509, 1054
ScrFI	CCNGG	4 cut(s)	210, 242, 471, 1402
SduI	GDGCHC	1 cut(s)	778
SexAI	ACCWGGT	2 cut(s)	208, 240
SfaNI	GCATC	6 cut(s)	50, 371, 1210, 1249, 1264, 1307
SfcI	CTRYAG	3 cut(s)	142, 435, 444
SfuI	TTCGAA	1 cut(s)	168
SmiMI	CAYNNNNRTG	2 cut(s)	1290, 1483
SmlI	CTYRAG	1 cut(s)	1065
SmoI	CTYRAG	1 cut(s)	1065
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	8 cut(s)	57, 115, 311, 624, 646, 1032, 1242, 1429
SseBI	AGGCCT	2 cut(s)	50, 816
SsiI	CCGC	4 cut(s)	710, 1168, 1369, 1537
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	3 cut(s)	381, 492, 1217
StuI	AGGCCT	2 cut(s)	50, 816
StyD4I	CCNGG	4 cut(s)	208, 240, 469, 1400
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	4 cut(s)	299, 699, 845, 899
TaiI	ACGT	2 cut(s)	469, 954
TaqI	TCGA	1 cut(s)	168
TasI	AATT	8 cut(s)	57, 115, 311, 624, 646, 1032, 1242, 1429
TatI	WGTACW	5 cut(s)	62, 96, 346, 801, 1021
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	6 cut(s)	225, 304, 702, 1010, 1189, 1490
TseFI	GTSAC	3 cut(s)	383, 995, 1210
TseI	GCWGC	3 cut(s)	488, 723, 755
Tsp45I	GTSAC	3 cut(s)	383, 995, 1210
TspDTI	ATGAA	8 cut(s)	188, 216, 388, 416, 494, 936, 1294, 1473
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	6 cut(s)	225, 304, 702, 1010, 1189, 1490
XapI	RAATTY	2 cut(s)	1032, 1242
XceI	RCATGY	2 cut(s)	931, 1003
XspI	CTAG	3 cut(s)	381, 492, 1217
ZraI	GACGTC	1 cut(s)	467
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.