Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Reverse (-)

2527888 .. 2550148

Gene Structure 22261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG028500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAAGCCAAAGAATGAGGGATCCACAAATGACGCTATAGTTTCTGCAGAACAAACCTCAATGAGACGTCCAGATGATGTTGGGATTGAGAGCTTGCCAAAGTTCAATTACATCCCACAAAACATCATATACCAAAATGCCAATCTGAATATTTCACTTTCTCGCATTGCGGATGAGGATTGCTGCCCAGATTGTTTTGGAGATTGTCTTTCAGCAGCATTTCCTTGCGCATGTGCTCTTGAAACTGGTGGGGAGTTTGTGTACACACCAGAAGGCCTACTGAAAGAAGATTTTCTAAGTAACCGTATGGCTCTGGTGAGGGAACCGGATAAGCAACCTCATGTTTATTGTCAAGACTGTCCTATTGAGAGGTCTAAGAATGAAGACATGCCTGAAAAATGCAAAGGACACGTGATCAGGAGGTTTATCAAAGAATGCTGGAGAAAATGTGGATGTGACATGCAGTGTGGAAATCGTGTTGTACAAAGGGGAATTTCGTGCAAGTTGCAGTTTGAGCAAAAGAGAGGACAAATTACCTCAGCTGTAGAGTGCTACATGAAAGAATATGGAGCCACAGAAGAAGAAGCAATAATCGGATTGCGTAGAAAAGTGAGTGACGCATGGAAGGACATAAATGAATCGTTCCTCCTCCCTAATGTTGTTCCGCGGCCACTGCTAACTCGAATTATTAACTTTGCATGTGTCATGGATGTTCTATACAAGTACGGAGACGGTTACACTACTCTTCATGATACTGTGCTCAAGGATTTTGTAATTTCTACACTTGTCCAACCCGTGCCTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

268

Amino Acids

30.34

Weight (kDa)

5.42

Isoelectric Point (pI)

51.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	30 - 159	1.5e-08	Pre-SET motif
Terpene_synth_C	PF03936	169 - 210	9e-10	Terpene synthase family, metal binding domain
Terpene_syn_C_2	PF19086	169 - 210	1.3e-08	Terpene synthase family 2, C-terminal metal binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	70
Acc16I	TGCGCA	1 cut(s)	229
AccII	CGCG	1 cut(s)	667
AciI	CCGC	3 cut(s)	170, 665, 667
AclWI	GGATC	2 cut(s)	15, 28
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	1 cut(s)	492
AcvI	CACGTG	1 cut(s)	412
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	3 cut(s)	263, 483, 725
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	106, 242
AluBI	AGCT	2 cut(s)	93, 542
AluI	AGCT	2 cut(s)	93, 542
Alw21I	GWGCWC	2 cut(s)	238, 762
Alw26I	GTCTC	2 cut(s)	58, 723
AlwI	GGATC	2 cut(s)	15, 28
AoxI	GGCC	2 cut(s)	274, 668
ApeKI	GCWGC	2 cut(s)	183, 215
ApoI	RAATTY	1 cut(s)	492
Asp700I	GAANNNNTTC	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	328
BamHI	GGATCC	1 cut(s)	20
BbrPI	CACGTG	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	2 cut(s)	238, 762
BbvCI	CCTCAGC	1 cut(s)	538
BbvI	GCAGC	2 cut(s)	170, 227
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	58, 723
BfmI	CTRYAG	3 cut(s)	36, 45, 543
BisI	GCNGC	3 cut(s)	184, 216, 668
BlsI	GCNGC	3 cut(s)	185, 217, 669
BmiI	GGNNCC	3 cut(s)	22, 324, 571
BpiI	GAAGAC	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	746
BsaAI	YACGTR	1 cut(s)	412
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	665
BsaWI	WCCGGW	1 cut(s)	325
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 433, 463
Bse1I	ACTGG	1 cut(s)	250
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	665
BseGI	GGATG	4 cut(s)	111, 178, 458, 715
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	2 cut(s)	170, 227
Bsh1236I	CGCG	1 cut(s)	667
BshFI	GGCC	2 cut(s)	276, 670
BsiHKAI	GWGCWC	2 cut(s)	238, 762
BsiSI	CCGG	1 cut(s)	326
BsmAI	GTCTC	2 cut(s)	58, 723
BsmBI	CGTCTC	2 cut(s)	58, 723
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	276, 670
Bsp1286I	GDGCHC	2 cut(s)	238, 762
Bsp1407I	TGTACA	2 cut(s)	261, 481
Bsp143I	GATC	2 cut(s)	20, 414
BspACI	CCGC	3 cut(s)	170, 665, 667
BspANI	GGCC	2 cut(s)	276, 670
BspCNI	CTCAG	1 cut(s)	551
BspFNI	CGCG	1 cut(s)	667
BspHI	TCATGA	1 cut(s)	748
BspLI	GGNNCC	3 cut(s)	22, 324, 571
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	2 cut(s)	15, 28
BsrDI	GCAATG	1 cut(s)	165
BsrGI	TGTACA	2 cut(s)	261, 481
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	665
BssMI	GATC	2 cut(s)	20, 414
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	4 cut(s)	305, 359, 734, 757
Bst6I	CTCTTC	1 cut(s)	750
BstACI	GRCGYC	1 cut(s)	67
BstAUI	TGTACA	2 cut(s)	261, 481
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	296, 375, 538
BstDSI	CCRYGG	1 cut(s)	665
BstF5I	GGATG	4 cut(s)	111, 178, 458, 715
BstFNI	CGCG	1 cut(s)	667
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	23, 417
BstMAI	GTCTC	2 cut(s)	58, 723
BstMBI	GATC	2 cut(s)	20, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	514, 673
BstNSI	RCATGY	4 cut(s)	234, 391, 463, 702
BstSFI	CTRYAG	3 cut(s)	36, 45, 543
BstUI	CGCG	1 cut(s)	667
BstV1I	GCAGC	2 cut(s)	170, 227
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	276, 670
BtgI	CCRYGG	1 cut(s)	665
BtsCI	GGATG	4 cut(s)	111, 178, 458, 715
BtsI	GCAGTG	2 cut(s)	470, 671
BtsIMutI	CAGTG	2 cut(s)	470, 671
Cac8I	GCNNGC	1 cut(s)	95
CciI	TCATGA	1 cut(s)	748
CfoI	GCGC	1 cut(s)	230
Cfr42I	CCGCGG	1 cut(s)	668
CseI	GACGC	2 cut(s)	41, 626
Csp6I	GTAC	3 cut(s)	262, 482, 724
CviAII	CATG	9 cut(s)	231, 341, 388, 460, 556, 621, 699, 706, 749
CviJI	RGCY	7 cut(s)	7, 93, 276, 311, 542, 572, 670
CviKI_1	RGCY	7 cut(s)	7, 93, 276, 311, 542, 572, 670
CviQI	GTAC	3 cut(s)	262, 482, 724
DdeI	CTNAG	3 cut(s)	296, 375, 538
DpnI	GATC	2 cut(s)	22, 416
DpnII	GATC	2 cut(s)	20, 414
EaeI	YGGCCR	1 cut(s)	668
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Eco147I	AGGCCT	1 cut(s)	276
Eco72I	CACGTG	1 cut(s)	412
Esp3I	CGTCTC	2 cut(s)	58, 723
FaeI	CATG	9 cut(s)	234, 344, 391, 463, 559, 624, 702, 709, 752
FatI	CATG	9 cut(s)	230, 340, 387, 459, 555, 620, 698, 705, 748
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	184, 216, 668
FokI	GGATG	4 cut(s)	98, 185, 465, 722
Fsp4HI	GCNGC	3 cut(s)	184, 216, 668
FspI	TGCGCA	1 cut(s)	229
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	3 cut(s)	184, 216, 668
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	2 cut(s)	276, 670
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	2 cut(s)	41, 626
HhaI	GCGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	9 cut(s)	234, 344, 391, 463, 559, 624, 702, 709, 752
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	1 cut(s)	638
HpaII	CCGG	1 cut(s)	326
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	262, 264
Hpy188I	TCNGA	2 cut(s)	147, 596
Hpy188III	TCNNGA	5 cut(s)	71, 239, 353, 418, 749
Hpy8I	GTNNAC	2 cut(s)	262, 264
HpyAV	CCTTC	2 cut(s)	266, 619
HpyCH4III	ACNGT	4 cut(s)	305, 359, 734, 757
HpyCH4IV	ACGT	2 cut(s)	67, 411
HpyCH4V	TGCA	6 cut(s)	47, 402, 463, 501, 508, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	514, 673
HpyF3I	CTNAG	3 cut(s)	296, 375, 538
HpySE526I	ACGT	2 cut(s)	67, 411
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	9 cut(s)	234, 344, 391, 463, 559, 624, 702, 709, 752
HspAI	GCGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	414
KspI	CCGCGG	1 cut(s)	668
Kzo9I	GATC	2 cut(s)	20, 414
LmnI	GCTCC	1 cut(s)	569
LpnPI	CCDG	9 cut(s)	84, 201, 231, 282, 299, 339, 403, 405, 424
Lsp1109I	GCAGC	2 cut(s)	170, 227
MaeII	ACGT	2 cut(s)	67, 411
MaeIII	GTNAC	4 cut(s)	299, 455, 614, 734
MalI	GATC	2 cut(s)	22, 416
MboI	GATC	2 cut(s)	20, 414
MboII	GAAGA	5 cut(s)	299, 395, 590, 593, 737
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	238, 762
MluCI	AATT	5 cut(s)	106, 492, 531, 684, 774
MroXI	GAANNNNTTC	1 cut(s)	291
MseI	TTAA	1 cut(s)	690
MspA1I	CMGCKG	2 cut(s)	542, 667
MspI	CCGG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	440
MvnI	CGCG	1 cut(s)	667
MwoI	GCNNNNNNNGC	2 cut(s)	514, 673
NdeII	GATC	2 cut(s)	20, 414
NlaIII	CATG	9 cut(s)	234, 344, 391, 463, 559, 624, 702, 709, 752
NlaIV	GGNNCC	3 cut(s)	22, 324, 571
NmuCI	GTSAC	2 cut(s)	455, 614
NsbI	TGCGCA	1 cut(s)	229
NspI	RCATGY	4 cut(s)	234, 391, 463, 702
PagI	TCATGA	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	276
PctI	GAATGC	1 cut(s)	440
PdmI	GAANNNNTTC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	638
PkrI	GCNGC	3 cut(s)	185, 217, 669
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	22, 324, 571
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	3 cut(s)	263, 483, 725
RsaNI	GTAC	3 cut(s)	262, 482, 724
SacII	CCGCGG	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	690
SatI	GCNGC	3 cut(s)	184, 216, 668
Sau3AI	GATC	2 cut(s)	20, 414
SduI	GDGCHC	2 cut(s)	238, 762
SetI	ASST	9 cut(s)	59, 70, 95, 340, 374, 414, 425, 539, 544
SfcI	CTRYAG	3 cut(s)	36, 45, 543
Sfr303I	CCGCGG	1 cut(s)	668
SgrBI	CCGCGG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	761
SmoI	CTYRAG	1 cut(s)	761
Sse9I	AATT	5 cut(s)	106, 492, 531, 684, 774
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	3 cut(s)	170, 665, 667
SspI	AATATT	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	276
TaaI	ACNGT	4 cut(s)	305, 359, 734, 757
TaiI	ACGT	2 cut(s)	70, 414
TaqI	TCGA	1 cut(s)	682
TasI	AATT	5 cut(s)	106, 492, 531, 684, 774
TatI	WGTACW	2 cut(s)	261, 481
TauI	GCSGC	1 cut(s)	670
TfiI	GAWTC	1 cut(s)	638
Tru1I	TTAA	1 cut(s)	690
Tru9I	TTAA	1 cut(s)	690
TscAI	CASTG	2 cut(s)	470, 678
TseFI	GTSAC	2 cut(s)	455, 614
TseI	GCWGC	2 cut(s)	183, 215
Tsp45I	GTSAC	2 cut(s)	455, 614
TspDTI	ATGAA	5 cut(s)	17, 396, 572, 651, 737
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	2 cut(s)	470, 678
XapI	RAATTY	1 cut(s)	492
XceI	RCATGY	4 cut(s)	234, 391, 463, 702
XmnI	GAANNNNTTC	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.