Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039188.1

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1068

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039188.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 545 bp

caatggctcccactagagagcaacttagagagcaccttgccaatgcttataaagctgcaaatgccgtgggaattagtaaagaagacattaaacctgtcctccggcgcttatatcaagcttttgacgagaactgggagcctattgaagcagacaactacagggttctaattgatacatactttgagttgaaggagaaggaagatgacgagcagagagatcaaaaaccacgtaaaagacgtcatttgtctgaggaggaagaccaggcatctttcagaactggatcaagttctgaattctccctcggacattccagacacaatggaaatcatcaatctacccgtcgtttggactctggagatggattagtacatcctgagcgggcatcagcttctgcagtctcacgtagtaatcacaagaacaatttcacgaagccaaaaaccaaggtatccacagatgatgctacagtttctgcaggaccaacctcaacaagacgtccgggtatatatttttttcccctgcatgatattagtttcttttacaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

180

Amino Acids

20.67

Weight (kDa)

7.12

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AatII	GACGTC	2 cut(s)	240, 495
AccBSI	CCGCTC	1 cut(s)	378
AciI	CCGC	1 cut(s)	378
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	2 cut(s)	237, 492
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	2 cut(s)	145, 189
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	55, 118, 388
AluI	AGCT	3 cut(s)	55, 118, 388
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	288
AlwNI	CAGNNNCTG	2 cut(s)	391, 469
ApeKI	GCWGC	1 cut(s)	55
ApoI	RAATTY	1 cut(s)	292
Asp700I	GAANNNNTTC	1 cut(s)	421
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	475
BaeI	ACNNNNGTAYC	2 cut(s)	428, 461
BbsI	GAAGAC	2 cut(s)	89, 263
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	42
BccI	CCATC	1 cut(s)	352
BceAI	ACGGC	1 cut(s)	49
BciT130I	CCWGG	1 cut(s)	262
BciVI	GTATCC	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	497
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	4 cut(s)	156, 392, 461, 470
BfoI	RGCGCY	1 cut(s)	108
BfuI	GTATCC	1 cut(s)	456
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	262, 497
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	8, 137
BmrFI	CCNGG	2 cut(s)	262, 497
BmrI	ACTGGG	1 cut(s)	141
BmsI	GCATC	3 cut(s)	274, 391, 447
BmuI	ACTGGG	1 cut(s)	141
BpiI	GAAGAC	2 cut(s)	89, 263
BpmI	CTGGAG	1 cut(s)	374
Bpu10I	CCTNAGC	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	497
BsaAI	YACGTR	2 cut(s)	229, 403
BsaHI	GRCGYC	2 cut(s)	237, 492
BsaJI	CCNNGG	3 cut(s)	65, 300, 440
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
Bse1I	ACTGG	2 cut(s)	136, 282
BseBI	CCWGG	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	65, 300, 440
BseGI	GGATG	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	239, 365
BseNI	ACTGG	2 cut(s)	136, 282
BseRI	GAGGAG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	2 cut(s)	102, 496
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	216, 280
BspACI	CCGC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	240, 366
BspLI	GGNNCC	2 cut(s)	8, 137
BspMAI	CTGCAG	2 cut(s)	396, 474
BspPI	GGATC	1 cut(s)	288
BsrBI	CCGCTC	1 cut(s)	378
BsrI	ACTGG	2 cut(s)	136, 282
BssECI	CCNNGG	3 cut(s)	65, 300, 440
BssMI	GATC	2 cut(s)	216, 280
BssNI	GRCGYC	2 cut(s)	237, 492
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	465
BstACI	GRCGYC	2 cut(s)	237, 492
BstBAI	YACGTR	2 cut(s)	229, 403
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	3 cut(s)	25, 248, 374
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	2 cut(s)	219, 283
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	2 cut(s)	216, 280
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 61
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	260, 495
BstSFI	CTRYAG	4 cut(s)	156, 392, 461, 470
BstV1I	GCAGC	1 cut(s)	42
BstV2I	GAAGAC	2 cut(s)	89, 263
BsuI	GTATCC	1 cut(s)	456
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	369
Cac8I	GCNNGC	1 cut(s)	380
CaiI	CAGNNNCTG	2 cut(s)	391, 469
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	1 cut(s)	367
CspCI	CAANNNNNGTGG	2 cut(s)	47, 82
CviAII	CATG	1 cut(s)	520
CviJI	RGCY	6 cut(s)	7, 55, 118, 138, 388, 432
CviKI_1	RGCY	6 cut(s)	7, 55, 118, 138, 388, 432
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	3 cut(s)	25, 248, 374
DpnI	GATC	2 cut(s)	218, 282
DpnII	GATC	2 cut(s)	216, 280
Eco130I	CCWWGG	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	475
EcoRI	GAATTC	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	440
FaeI	CATG	1 cut(s)	523
FaiI	YATR	6 cut(s)	50, 111, 177, 502, 504, 521
FatI	CATG	1 cut(s)	519
FauI	CCCGC	1 cut(s)	371
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	108
HapII	CCGG	2 cut(s)	102, 496
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	2 cut(s)	237, 492
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	349
HpaII	CCGG	2 cut(s)	102, 496
Hpy188I	TCNGA	4 cut(s)	249, 274, 291, 304
Hpy188III	TCNNGA	4 cut(s)	311, 353, 373, 426
Hpy99I	CGWCG	1 cut(s)	344
HpyAV	CCTTC	2 cut(s)	183, 189
HpyCH4III	ACNGT	1 cut(s)	465
HpyCH4IV	ACGT	4 cut(s)	228, 237, 402, 492
HpyCH4V	TGCA	4 cut(s)	58, 394, 472, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 61
HpyF3I	CTNAG	3 cut(s)	25, 248, 374
HpySE526I	ACGT	4 cut(s)	228, 237, 402, 492
Hsp92I	GRCGYC	2 cut(s)	237, 492
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	216, 280
LmnI	GCTCC	2 cut(s)	12, 135
Lsp1109I	GCAGC	1 cut(s)	42
LweI	GCATC	3 cut(s)	274, 391, 447
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	4 cut(s)	228, 237, 402, 492
MalI	GATC	2 cut(s)	218, 282
MbiI	CCGCTC	1 cut(s)	378
MboI	GATC	2 cut(s)	216, 280
MboII	GAAGA	3 cut(s)	94, 211, 268
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	5 cut(s)	71, 167, 292, 420, 540
MlyI	GAGTC	1 cut(s)	343
MnlI	CCTC	5 cut(s)	109, 243, 246, 310, 492
MroXI	GAANNNNTTC	1 cut(s)	421
MseI	TTAA	1 cut(s)	89
MspI	CCGG	2 cut(s)	102, 496
MspR9I	CCNGG	2 cut(s)	262, 497
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	52, 61
NciI	CCSGG	1 cut(s)	497
NdeII	GATC	2 cut(s)	216, 280
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	2 cut(s)	8, 137
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	2 cut(s)	229, 403
PsiI	TTATAA	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	8, 137
PspPI	GGNCC	1 cut(s)	475
PstI	CTGCAG	2 cut(s)	396, 474
PstNI	CAGNNNCTG	2 cut(s)	391, 469
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	2 cut(s)	216, 280
Sau96I	GGNCC	1 cut(s)	475
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	262, 497
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	3 cut(s)	274, 391, 447
SfcI	CTRYAG	4 cut(s)	156, 392, 461, 470
SinI	GGWCC	1 cut(s)	475
Sse9I	AATT	5 cut(s)	71, 167, 292, 420, 540
SsiI	CCGC	1 cut(s)	378
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	260, 495
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	1 cut(s)	465
TaiI	ACGT	4 cut(s)	231, 240, 405, 495
TasI	AATT	5 cut(s)	71, 167, 292, 420, 540
TatI	WGTACW	1 cut(s)	366
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseI	GCWGC	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	421
XspI	CTAG	1 cut(s)	14
ZraI	GACGTC	2 cut(s)	238, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.