Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Forward (+)

70202495 .. 70203295

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0517800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCTGGGAAACATCATTGAAGATTTTTCTTGGGTCCCCAAAGCACAATATCTCTTGCTTGCTTCTATCTATGAGCTTGAAACTACAGTCATTGACATTTTAAGATTAGAATTTTCACTGCCTGTTTATACAATTGGTCCATTGATACCTCACTTCAAAGCTAATGACCCTCCTAGTAGTGGTTTGGACTATCTAGAATGGCTAGATTCTCAAACTTTTAGCTCTGTCTTGTACATCTCAATGGGAAGCTTTCTTTCAGTCTCTTATGCCCAAATGGATGAGATTGCAGCCGGTTTGTGCAAGAGTGGTGTTCGATTCTTTTGGGTAGCTCGTGGTGAAACCGTTAGCGAAGGTGTTTTCTCTGGTGTTCCTTTTCTTACTTTCCCCATGATTTTCGATCAAGGCCTGAACAGTAAGATGGTTGTGGAGGATTGGAAGATTGGATGGAAAGTGAAGAGACCTGAGGCGAAAATCGACCAGGTGGTTACAAGAGAGGAAATTGCAGGGTTGGTGAAGAAATTCATGGATTTGGAGGATGGTGAAGGGAAAGAGACGAGGAGTAGAGTAAGAGAATTACAGCATACATGGAAGGGTGCCATTGAAGAAGGTGGATCCTTTAAAACCAACTTCGGTGCCTTCATCAGAGATTTCTTGCAACGCCATGCACATCAAGCAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

226

Amino Acids

25.6

Weight (kDa)

5.19

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	593, 632
AclWI	GGATC	2 cut(s)	606, 619
AcsI	RAATTY	2 cut(s)	110, 518
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	4 cut(s)	20, 80, 157, 602
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	5 cut(s)	76, 161, 222, 249, 329
AluI	AGCT	5 cut(s)	76, 161, 222, 249, 329
Alw26I	GTCTC	3 cut(s)	265, 451, 545
AlwI	GGATC	2 cut(s)	606, 619
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	110, 518
Asp700I	GAANNNNTTC	1 cut(s)	518
AspS9I	GGNCC	2 cut(s)	34, 137
AsuHPI	GGTGA	3 cut(s)	347, 523, 551
AvaII	GGWCC	2 cut(s)	34, 137
AxyI	CCTNAGG	1 cut(s)	462
BamHI	GGATCC	1 cut(s)	611
BanI	GGYRCC	2 cut(s)	593, 632
BauI	CACGAG	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	3 cut(s)	412, 438, 530
BciT130I	CCWGG	1 cut(s)	479
BcoDI	GTCTC	3 cut(s)	265, 451, 545
BfaI	CTAG	3 cut(s)	174, 194, 203
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	2 cut(s)	34, 137
BmgT120I	GGNCC	2 cut(s)	34, 137
BmiI	GGNNCC	5 cut(s)	35, 36, 595, 613, 634
BmrFI	CCNGG	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	451
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	290
Bse21I	CCTNAGG	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	479
BseGI	GGATG	3 cut(s)	283, 449, 541
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMII	CTCAG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	571
BseXI	GCAGC	1 cut(s)	299
BseYI	CCCAGC	1 cut(s)	4
BshFI	GGCC	1 cut(s)	405
BshNI	GGYRCC	2 cut(s)	593, 632
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	3 cut(s)	265, 451, 545
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	405
Bso31I	GGTCTC	1 cut(s)	451
Bsp1407I	TGTACA	1 cut(s)	231
Bsp143I	GATC	2 cut(s)	397, 611
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	454
BspLI	GGNNCC	5 cut(s)	35, 36, 595, 613, 634
BspPI	GGATC	2 cut(s)	606, 619
BspT107I	GGYRCC	2 cut(s)	593, 632
BspTNI	GGTCTC	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	290
BssMI	GATC	2 cut(s)	397, 611
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	88, 343, 413
Bst6I	CTCTTC	1 cut(s)	449
BstAUI	TGTACA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	283, 449, 541
BstKTI	GATC	2 cut(s)	400, 614
BstMAI	GTCTC	3 cut(s)	265, 451, 545
BstMBI	GATC	2 cut(s)	397, 611
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstNI	CCWGG	1 cut(s)	479
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	405
BtsCI	GGATG	3 cut(s)	283, 449, 541
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	60
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	34, 137
CsiI	ACCWGGT	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	4 cut(s)	388, 523, 585, 662
CviJI	RGCY	8 cut(s)	76, 161, 202, 222, 249, 290, 329, 405
CviKI_1	RGCY	8 cut(s)	76, 161, 202, 222, 249, 290, 329, 405
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	2 cut(s)	399, 613
DpnII	GATC	2 cut(s)	397, 611
DraI	TTTAAA	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
Eco147I	AGGCCT	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	34, 137
Eco81I	CCTNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	4 cut(s)	391, 526, 588, 665
FaiI	YATR	8 cut(s)	72, 129, 267, 389, 524, 582, 586, 663
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	4 cut(s)	387, 522, 584, 661
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	3 cut(s)	290, 456, 548
Fsp4HI	GCNGC	1 cut(s)	288
FspBI	CTAG	3 cut(s)	174, 194, 203
GluI	GCNGC	1 cut(s)	288
GsaI	CCCAGC	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	4 cut(s)	391, 526, 588, 665
HindIII	AAGCTT	1 cut(s)	247
HinfI	GANTC	2 cut(s)	206, 315
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	3 cut(s)	347, 523, 551
Hpy188I	TCNGA	1 cut(s)	644
Hpy188III	TCNNGA	1 cut(s)	194
HpyAV	CCTTC	5 cut(s)	344, 536, 583, 599, 646
HpyCH4III	ACNGT	3 cut(s)	88, 343, 413
HpyCH4V	TGCA	5 cut(s)	287, 300, 503, 655, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	1 cut(s)	462
Hsp92II	CATG	4 cut(s)	391, 526, 588, 665
KflI	GGGWCCC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	397, 611
LpnPI	CCDG	8 cut(s)	135, 304, 348, 419, 464, 474, 489, 491
Lsp1109I	GCAGC	1 cut(s)	299
MabI	ACCWGGT	1 cut(s)	477
MaeI	CTAG	3 cut(s)	174, 194, 203
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	2 cut(s)	399, 613
MboI	GATC	2 cut(s)	397, 611
MboII	GAAGA	5 cut(s)	32, 448, 466, 526, 614
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	611
MluCI	AATT	5 cut(s)	110, 132, 498, 518, 572
MnlI	CCTC	7 cut(s)	159, 180, 421, 457, 487, 526, 549
MroXI	GAANNNNTTC	1 cut(s)	518
MseI	TTAA	2 cut(s)	101, 618
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	479
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	671
NdeII	GATC	2 cut(s)	397, 611
NlaIII	CATG	4 cut(s)	391, 526, 588, 665
NlaIV	GGNNCC	5 cut(s)	35, 36, 595, 613, 634
PceI	AGGCCT	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	518
PfeI	GAWTC	2 cut(s)	206, 315
PkrI	GCNGC	1 cut(s)	289
PpuMI	RGGWCCY	1 cut(s)	34
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	477
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	5 cut(s)	35, 36, 595, 613, 634
PspPI	GGNCC	2 cut(s)	34, 137
PspPPI	RGGWCCY	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	611
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	101, 618
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	2 cut(s)	397, 611
Sau96I	GGNCC	2 cut(s)	34, 137
ScrFI	CCNGG	1 cut(s)	479
SexAI	ACCWGGT	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	2 cut(s)	34, 137
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	5 cut(s)	110, 132, 498, 518, 572
SseBI	AGGCCT	1 cut(s)	405
SspMI	CTAG	3 cut(s)	174, 194, 203
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	3 cut(s)	88, 343, 413
TaqI	TCGA	3 cut(s)	313, 396, 474
TasI	AATT	5 cut(s)	110, 132, 498, 518, 572
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	206, 315
Tru1I	TTAA	2 cut(s)	101, 618
Tru9I	TTAA	2 cut(s)	101, 618
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	511, 628
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	34, 137
XapI	RAATTY	2 cut(s)	110, 518
XbaI	TCTAGA	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	518
XspI	CTAG	3 cut(s)	174, 194, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.