Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Reverse (-)

70256218 .. 70258370

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0518100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1857 bp

ATGATGCTCAAAATGTCTTCTTCTTGTTCTTCTGGTTGCAGCAGCAGCAGCAGCAGCAGCAGCACAAGAGGTAACCCAGTTCTGCACTTTACCACTCTTGATGTTCCCATCAACAACTACATGAGCACAAGAAGAAGAGGCTTTCATTCTAAAAACCCAAAACCTGCAAAATCTAGAGAAACCCATCGAGGGAAGCTTGTGAGAGACAACCCTCAACCCTCTGTGCCCAAAGTCAGAAGTCTTGAACATGCGTTGAAGGTGTTCGGTGAAATGCTTCAAAGGCGTCCTCTGCCTTCGGTTGTCCGTTTCACTCAAATCTTGACTCAAGTTTCCAAATTGAGTCAATATTCGGCAGTCATTTCTATGAATAAACAGATGGTTCAGTGTGGAATTGGTCCTAATCACTATACCCTATCTATTATCATGAATTGCTTTTGCCATTTAAATCAAATGGGGTTTAGCTTATCTGTCTTGGCACACTTCTTCAAATTGGGTCTTCAACCAACTGTCACCACCTACACTACTCTAATCAACGGCTTTGTTCTCAAGAATAGAATGGCTGAGGCAGCAGGGATTTTCAGCAAAATGCTGCAGGCAGGTCATTGTGTGCCCGATGTGGTTGCTTTCAACACACTAATAAAGGGACTTTGCATGAGGGGTGACAACAGTGCAGCTATTCAATTGCTCAGGAAGATGGAAGAAAGAGGTTGTAAGCCTAACGTAGTCGTCTACAGCACGATCATTGACAGTCTTTGCAAGGATACGCTAGTTGTTGATGCACTGAACCTCTTCTCAGAAATGATTAGTAGGGGCATTGCTCCAAACGTTGTTACTTACACCTCTTTGATTCAAGGAGTTTGCAACATAGGTCAGTGGAAAGAAGCTACAAGGTTGTTGAATGAAATGGCGAGTAGAAATATCTTTCCGGATGTAGTCACCTTCAATGTCTTGGTTGATGGACTTTGTAAGGAGGGGAAGGTTGTGGAAGCCAAAAGTGTAGTTGAAATGATGATCCAAAGAGATATTGAGCCTAATGTGATTACCTACAATTCACTAATGGATGGTTACTGTTTGCGAGGTGAAATGGATGAAGCAAGAAAAGTCTTCGATCTAATGCTTAGCAAGGTCTGCATGGTTAATGTTCGTAGTTGTAGTATATTGATAAATGGATATTGTAAACATAAAAAGATTGATGAGGCCAACAAGGTTTTTCAGGAAATGCTTTGTATGGAACTTGTTCCCAATACCATTACTTACAATACTCTTATTGACGGTTTTTGTAAAGTGGGAAGAATACAGGTAGCAGAGAAGTTGTTCTCTCAGATGCAAGGTAGTGGCCAACTTCCAGATGTTCAAACGTACACCATTCTAATGGATGGCCTATGTGGAAACAAGCAACTTTGTACGGCAATGGAACTGCTTAGAGAGGTGGAAGACAAGAAGCTGGAACTAGATATTGTAATTTACACTGTTATCATTGAAGGTTTGTTCAAAGCTGGAAAACTTGAATCTGCTGCAGATGTTTTCTCTAGTTTGTCTGCAAAAAGAGTTCAGCCTAATGTGAGGACATATACTGTGATGATTAATGGACTCTGTAATGGATGCCTATTGGTTGAAGCAGAAAAGTTGCTTAGAGAAATGGGAGAGAAAGGCTGTTCTCCAAATGAGTGTACATATAACACCATCATCCGAGGGTTTATCAATAACAATGAGACATCAAGAGCTGTGGGACTAATTCAAGAAATGGTGGAGATGGGGTTCTCTGCAGATGCATCAACTACAGAATTGATAATTGATTTGTTGTCTAAAGATAAAGTAGATCCAGCTTTGTTGTCATATTTAAAAAGTTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

618

Amino Acids

68.6

Weight (kDa)

8.63

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	98 - 147	9.3e-06	PPR repeat family
PPR_3	PF13812	163 - 214	5.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	165 - 196	6.9e-07	PPR repeat
PPR_1	PF12854	202 - 233	2.4e-10	PPR repeat
PPR_2	PF13041	204 - 253	1.8e-17	PPR repeat family
PPR_3	PF13812	204 - 249	1.8e-09	Pentatricopeptide repeat domain
PPR	PF01535	207 - 237	4.6e-06	PPR repeat
PPR_long	PF17177	219 - 386	1.2e-10	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	235 - 267	7.4e-12	PPR repeat
PPR_2	PF13041	239 - 288	4.6e-17	PPR repeat family
PPR_3	PF13812	263 - 318	1.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	270 - 302	4.1e-11	PPR repeat
PPR_2	PF13041	274 - 323	6.4e-19	PPR repeat family
PPR	PF01535	277 - 307	6.4e-06	PPR repeat
PPR_1	PF12854	305 - 337	2.1e-11	PPR repeat
PPR_2	PF13041	309 - 357	1.8e-16	PPR repeat family
PPR	PF01535	312 - 342	1.3e-06	PPR repeat
PPR_3	PF13812	333 - 387	3.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	341 - 372	2.6e-12	PPR repeat
PPR_2	PF13041	344 - 393	3.4e-15	PPR repeat family
PPR	PF01535	347 - 375	3.3e-08	PPR repeat
PPR_1	PF12854	377 - 407	4.5e-07	PPR repeat
PPR_2	PF13041	380 - 428	2.4e-16	PPR repeat family
PPR	PF01535	383 - 409	6.9e-07	PPR repeat
PPR_3	PF13812	402 - 464	5.3e-06	Pentatricopeptide repeat domain
TPR_24	PF23276	402 - 511	1.3e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	411 - 443	1e-13	PPR repeat
PPR_2	PF13041	414 - 462	1.6e-19	PPR repeat family
PPR	PF01535	417 - 446	4.3e-08	PPR repeat
PPR_3	PF13812	473 - 529	2.8e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	485 - 533	4.2e-15	PPR repeat family
PPR_1	PF12854	516 - 547	1.5e-08	PPR repeat
PPR	PF01535	523 - 552	1.8e-06	PPR repeat
PPR_2	PF13041	539 - 567	7.1e-08	PPR repeat family
PPR_1	PF12854	550 - 583	3.5e-07	PPR repeat
PPR_2	PF13041	554 - 602	1.9e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	172, 587
AccI	GTMKAC	1 cut(s)	729
AccIII	TCCGGA	1 cut(s)	925
AclI	AACGTT	1 cut(s)	825
AclWI	GGATC	2 cut(s)	1006, 1814
AcoI	YGGCCR	1 cut(s)	1336
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	3 cut(s)	1361, 1405, 1672
AfiI	CCNNNNNNNGG	1 cut(s)	189
AloI	GAACNNNNNNTCC	2 cut(s)	1742, 1774
AluBI	AGCT	8 cut(s)	196, 462, 674, 884, 1444, 1496, 1724, 1826
AluI	AGCT	8 cut(s)	196, 462, 674, 884, 1444, 1496, 1724, 1826
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	2 cut(s)	198, 1706
AlwI	GGATC	2 cut(s)	1006, 1814
Aor13HI	TCCGGA	1 cut(s)	925
AoxI	GGCC	3 cut(s)	1197, 1336, 1378
AseI	ATTAAT	1 cut(s)	1584
Asp700I	GAANNNNTTC	5 cut(s)	260, 273, 788, 1236, 1313
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	5 cut(s)	278, 502, 671, 928, 1091
AvaII	GGWCC	1 cut(s)	395
BaeGI	GKGCMC	2 cut(s)	228, 612
BaeI	ACNNNNGTAYC	2 cut(s)	753, 786
BalI	TGGCCA	1 cut(s)	1338
BbsI	GAAGAC	4 cut(s)	9, 488, 1096, 1440
Bbv12I	GWGCWC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	561
BccI	CCATC	9 cut(s)	116, 192, 370, 688, 950, 1055, 1370, 1691, 1747
BceAI	ACGGC	2 cut(s)	550, 1422
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciVI	GTATCC	1 cut(s)	754
BcoDI	GTCTC	2 cut(s)	198, 1706
BfaI	CTAG	4 cut(s)	174, 767, 1451, 1530
BfmI	CTRYAG	5 cut(s)	590, 730, 1515, 1764, 1779
BfuAI	ACCTGC	2 cut(s)	172, 587
BfuI	GTATCC	1 cut(s)	754
BlpI	GCTNAGC	1 cut(s)	1118
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	5 cut(s)	766, 1314, 1592, 1759, 1781
BmuI	ACTGGG	1 cut(s)	71
BpiI	GAAGAC	4 cut(s)	9, 488, 1096, 1440
Bpu10I	CCTNAGC	2 cut(s)	561, 686
Bpu1102I	GCTNAGC	1 cut(s)	1118
BpuEI	CTTGAG	2 cut(s)	309, 530
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	1 cut(s)	1690
BsaWI	WCCGGW	1 cut(s)	925
BsaXI	ACNNNNNCTCC	2 cut(s)	1742, 1772
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	2 cut(s)	813, 1416
BseAI	TCCGGA	1 cut(s)	925
BseDI	CCNNGG	1 cut(s)	1690
BseGI	GGATG	6 cut(s)	934, 1066, 1093, 1381, 1607, 1686
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseMI	GCAATG	2 cut(s)	813, 1416
BseMII	CTCAG	4 cut(s)	552, 700, 807, 1334
BseNI	ACTGG	1 cut(s)	77
BseSI	GKGCMC	2 cut(s)	228, 612
BsgI	GTGCAG	2 cut(s)	68, 690
BshFI	GGCC	3 cut(s)	1199, 1338, 1380
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	926
BslFI	GGGAC	2 cut(s)	657, 1743
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	198, 1706
BsmFI	GGGAC	2 cut(s)	657, 1743
BsnI	GGCC	3 cut(s)	1199, 1338, 1380
Bsp1286I	GDGCHC	3 cut(s)	128, 228, 612
Bsp13I	TCCGGA	1 cut(s)	925
Bsp1407I	TGTACA	1 cut(s)	1670
Bsp143I	GATC	4 cut(s)	738, 1011, 1108, 1819
Bsp1720I	GCTNAGC	1 cut(s)	1118
BspANI	GGCC	3 cut(s)	1199, 1338, 1380
BspCNI	CTCAG	4 cut(s)	553, 699, 806, 1333
BspEI	TCCGGA	1 cut(s)	925
BspHI	TCATGA	1 cut(s)	423
BspMAI	CTGCAG	3 cut(s)	594, 1519, 1768
BspMI	ACCTGC	2 cut(s)	172, 587
BspPI	GGATC	2 cut(s)	1006, 1814
BsrDI	GCAATG	2 cut(s)	813, 1416
BsrGI	TGTACA	1 cut(s)	1670
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	1690
BssMI	GATC	4 cut(s)	738, 1011, 1108, 1819
BssNI	GRCGYC	1 cut(s)	283
Bst4CI	ACNGT	7 cut(s)	508, 668, 749, 1070, 1274, 1471, 1576
Bst6I	CTCTTC	2 cut(s)	130, 794
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	1128
BstAUI	TGTACA	1 cut(s)	1670
BstC8I	GCNNGC	1 cut(s)	594
BstDEI	CTNAG	7 cut(s)	561, 686, 793, 1118, 1320, 1421, 1631
BstEII	GGTNACC	1 cut(s)	71
BstF5I	GGATG	6 cut(s)	934, 1066, 1093, 1381, 1607, 1686
BstKTI	GATC	4 cut(s)	741, 1014, 1111, 1822
BstMAI	GTCTC	2 cut(s)	198, 1706
BstMBI	GATC	4 cut(s)	738, 1011, 1108, 1819
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	71
BstSFI	CTRYAG	5 cut(s)	590, 730, 1515, 1764, 1779
BstSLI	GKGCMC	2 cut(s)	228, 612
BstV2I	GAAGAC	4 cut(s)	9, 488, 1096, 1440
BstX2I	RGATCY	1 cut(s)	1819
BstXI	CCANNNNNNTGG	1 cut(s)	1372
BstYI	RGATCY	1 cut(s)	1819
BsuI	GTATCC	1 cut(s)	754
BsuRI	GGCC	3 cut(s)	1199, 1338, 1380
BtsCI	GGATG	6 cut(s)	934, 1066, 1093, 1381, 1607, 1686
BtsIMutI	CAGTG	5 cut(s)	389, 673, 779, 878, 1467
BveI	ACCTGC	2 cut(s)	172, 587
Cac8I	GCNNGC	1 cut(s)	594
CciI	TCATGA	1 cut(s)	423
Cfr13I	GGNCC	1 cut(s)	395
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	1360, 1404, 1671
CspCI	CAANNNNNGTGG	2 cut(s)	1707, 1742
CviAII	CATG	5 cut(s)	121, 248, 424, 652, 1132
CviQI	GTAC	3 cut(s)	1360, 1404, 1671
DdeI	CTNAG	7 cut(s)	561, 686, 793, 1118, 1320, 1421, 1631
DpnI	GATC	4 cut(s)	740, 1013, 1110, 1821
DpnII	GATC	4 cut(s)	738, 1011, 1108, 1819
DraI	TTTAAA	2 cut(s)	444, 1842
EaeI	YGGCCR	1 cut(s)	1336
Eam1104I	CTCTTC	2 cut(s)	130, 794
EarI	CTCTTC	2 cut(s)	130, 794
Eco47I	GGWCC	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	71
EcoO65I	GGTNACC	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	1774
FaeI	CATG	5 cut(s)	124, 251, 427, 655, 1135
FaqI	GGGAC	2 cut(s)	657, 1743
FatI	CATG	5 cut(s)	120, 247, 423, 651, 1131
FblI	GTMKAC	1 cut(s)	729
FokI	GGATG	6 cut(s)	941, 1073, 1100, 1388, 1614, 1673
FspBI	CTAG	4 cut(s)	174, 767, 1451, 1530
HaeIII	GGCC	3 cut(s)	1199, 1338, 1380
HapII	CCGG	1 cut(s)	926
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	5 cut(s)	124, 251, 427, 655, 1135
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	5 cut(s)	322, 340, 847, 1508, 1590
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	5 cut(s)	278, 502, 671, 928, 1091
Hpy166II	GTNNAC	4 cut(s)	730, 1178, 1362, 1671
Hpy188I	TCNGA	4 cut(s)	236, 796, 1323, 1691
Hpy8I	GTNNAC	4 cut(s)	730, 1178, 1362, 1671
HpyAV	CCTTC	5 cut(s)	250, 303, 949, 970, 1475
HpyCH4III	ACNGT	7 cut(s)	508, 668, 749, 1070, 1274, 1471, 1576
HpyCH4IV	ACGT	3 cut(s)	720, 825, 1358
HpyF3I	CTNAG	7 cut(s)	561, 686, 793, 1118, 1320, 1421, 1631
HpySE526I	ACGT	3 cut(s)	720, 825, 1358
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	5 cut(s)	124, 251, 427, 655, 1135
Kpn2I	TCCGGA	1 cut(s)	925
Kzo9I	GATC	4 cut(s)	738, 1011, 1108, 1819
LmnI	GCTCC	1 cut(s)	823
LweI	GCATC	5 cut(s)	766, 1314, 1592, 1759, 1781
MaeI	CTAG	4 cut(s)	174, 767, 1451, 1530
MaeII	ACGT	3 cut(s)	720, 825, 1358
MaeIII	GTNAC	6 cut(s)	71, 508, 659, 829, 934, 1064
MalI	GATC	4 cut(s)	740, 1013, 1110, 1821
MboI	GATC	4 cut(s)	738, 1011, 1108, 1819
MfeI	CAATTG	1 cut(s)	680
MflI	RGATCY	1 cut(s)	1819
MhlI	GDGCHC	3 cut(s)	128, 228, 612
MlsI	TGGCCA	1 cut(s)	1338
MluNI	TGGCCA	1 cut(s)	1338
MlyI	GAGTC	3 cut(s)	316, 349, 1584
Mox20I	TGGCCA	1 cut(s)	1338
Mph1103I	ATGCAT	1 cut(s)	1774
MroI	TCCGGA	1 cut(s)	925
MroXI	GAANNNNTTC	5 cut(s)	260, 273, 788, 1236, 1313
MscI	TGGCCA	1 cut(s)	1338
MseI	TTAA	4 cut(s)	443, 1137, 1584, 1841
MslI	CAYNNNNRTG	2 cut(s)	362, 1370
Msp20I	TGGCCA	1 cut(s)	1338
MspI	CCGG	1 cut(s)	926
MunI	CAATTG	1 cut(s)	680
NdeII	GATC	4 cut(s)	738, 1011, 1108, 1819
NlaIII	CATG	5 cut(s)	124, 251, 427, 655, 1135
NmuCI	GTSAC	3 cut(s)	508, 659, 934
NsiI	ATGCAT	1 cut(s)	1774
NspI	RCATGY	1 cut(s)	251
PagI	TCATGA	1 cut(s)	423
PdmI	GAANNNNTTC	5 cut(s)	260, 273, 788, 1236, 1313
PfeI	GAWTC	2 cut(s)	847, 1508
PleI	GAGTC	3 cut(s)	316, 348, 1584
PpsI	GAGTC	3 cut(s)	316, 348, 1584
PshBI	ATTAAT	1 cut(s)	1584
Psp1406I	AACGTT	1 cut(s)	825
PspEI	GGTNACC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	395
PstI	CTGCAG	3 cut(s)	594, 1519, 1768
PsuI	RGATCY	1 cut(s)	1819
RsaI	GTAC	3 cut(s)	1361, 1405, 1672
RsaNI	GTAC	3 cut(s)	1360, 1404, 1671
RseI	CAYNNNNRTG	2 cut(s)	362, 1370
SaqAI	TTAA	4 cut(s)	443, 1137, 1584, 1841
Sau3AI	GATC	4 cut(s)	738, 1011, 1108, 1819
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	3 cut(s)	316, 349, 1584
SduI	GDGCHC	3 cut(s)	128, 228, 612
SfaNI	GCATC	5 cut(s)	766, 1314, 1592, 1759, 1781
SfcI	CTRYAG	5 cut(s)	590, 730, 1515, 1764, 1779
SinI	GGWCC	1 cut(s)	395
SmiI	ATTTAAAT	1 cut(s)	444
SmiMI	CAYNNNNRTG	2 cut(s)	362, 1370
SmlI	CTYRAG	2 cut(s)	324, 545
SmoI	CTYRAG	2 cut(s)	324, 545
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	4 cut(s)	174, 767, 1451, 1530
SwaI	ATTTAAAT	1 cut(s)	444
TaaI	ACNGT	7 cut(s)	508, 668, 749, 1070, 1274, 1471, 1576
TaiI	ACGT	3 cut(s)	723, 828, 1361
TaqI	TCGA	2 cut(s)	187, 1107
TatI	WGTACW	1 cut(s)	1670
TfiI	GAWTC	2 cut(s)	847, 1508
Tru1I	TTAA	4 cut(s)	443, 1137, 1584, 1841
Tru9I	TTAA	4 cut(s)	443, 1137, 1584, 1841
TscAI	CASTG	5 cut(s)	389, 673, 786, 878, 1474
TseFI	GTSAC	3 cut(s)	508, 659, 934
Tsp45I	GTSAC	3 cut(s)	508, 659, 934
TspDTI	ATGAA	6 cut(s)	134, 380, 440, 915, 1104, 1839
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	5 cut(s)	389, 673, 786, 878, 1474
VpaK11BI	GGWCC	1 cut(s)	395
VspI	ATTAAT	1 cut(s)	1584
XbaI	TCTAGA	1 cut(s)	173
XceI	RCATGY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	729
XmnI	GAANNNNTTC	5 cut(s)	260, 273, 788, 1236, 1313
XspI	CTAG	4 cut(s)	174, 767, 1451, 1530
Zsp2I	ATGCAT	1 cut(s)	1774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.