Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Forward (+)

1205734 .. 1211675

Gene Structure 5942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG018800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

ATGGCTCCCACTAGAGAGCAACTTAGAGAGCATCTTGCCAATGCTTATAAAGCCGCAAATGCCGTGGGAATTAGTAAAGAAGACATTAAACCTGTCCTCCGGCGCTTATATCAAGCTTTTGACGAGAACTGGGAGCCTATTGAAGCAGACAACTACAGGGTTCTAATTGATACATACTTTGAGTTGAAGGAGAAGGAAGATGACGAGCAGAGAGATCAAAAACCACGTAAAAGACGTCATTTGACTGAGGAGGAAGACCAGGCATCTTTCAGAACTGGATCAAGTTCTGAATTCTCCCTCGGACATTCCAGACACAATGGAAATCATCGATCTACCCGTCATTTGGACTCTGGAGATGGATCAGTACATCCTGAGCGGGCATCAGCTTCTGCAGTCTCGTGTAGTAATCACAAGAACAATTTCACGAAGCCAAAAAACAAGGTATCCACAGATGATGCTACAGTTTCTGCAGGACCAACCTCAATAACACGTCCGGGACCAGTTGGAGCTGCTAGAATACAACGACCCAAGCCAGAATCAAATGCTGCACCTATCACTTGTGAGGATAAGAAGCCACTCAGATGTATATCAGACATAACAAAATCAACTGAGAAGGTGGCGATATCCTTAGTAGATGAAGTGGGAAATGGGAGCTTGCCAAAGTTCAATTACATCCCACACAACATAATATACGAAAATGCCCATCTAAATATTTCACTCTCTCGTATTGCGGATGAGGATTGCTGTCTGGATTGTTCCGGAGATTGTCTTTCATCTGCATTACCATGTGCATGTGCTCATGAAACTGGTGGGGAGTTTGTGTACACACCAGAAGGTCTGCTGAAAGAAGAATTTCTAAGTAAGCATATGGCTCTGGTGAGGGAACCAGAGAAGCAAAATTATGTTTACTGTCAAGATTGCCCTATTGAGAGGTCTAAGAATGAAGACATGCCGGAAAGCTGCAAAGGGCATGTGGTCCGACAGTTTATTAAAGAGTGTTGGAGAAAATGTGGATGTGACATGCAATGTGGAAACAGAGTAGTACAAAGGGGGATTTCATGCAAGTTGCAGGTGTTCTGGACTTCTCAAGGAAAAGGCTGGGGAGTTAGAACCTTAGAGGTCTTGGAGAAAGGATCCTTCGTCTGTGAATATGTCGGGGAGATACTGACCAATACAGAGTTATATAATCGGAATATGAAAAGCAATGGCAATGACAGACATACATACCCAGTCACACTAGATGCAGATTGGGGGTCAGAACAGATTTTGAGGGATGAGGATGCCCTGTGTCTGGATGGGACGCTTCATGGAAATGTTGCAAGGTTTATCAATCATAGATGCTTTGATGGAAACTTGGTTGATATCCCAGTTCAAGTGGAGACTCCTGACCGCCATTATTATCATCTTGCCTTTTTCACTACCAGGAAAGTGAATGCCTTTGAAGAGTTGACTTGGGTGAGTGAGCTTGTTTCTTATCTACTACTTGAGTTACCTATTCTGTATACTATTTTAAGTGCTATGCCGATTGTTGAATGTTCTATCCATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

516

Amino Acids

58.3

Weight (kDa)

5.79

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIYLD	PF10440	10 - 64	2e-14	Ubiquitin-binding WIYLD domain
Pre-SET	PF05033	201 - 346	3.7e-12	Pre-SET motif
SET	PF00856	366 - 485	4.7e-15	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	48
AarI	CACCTGC	1 cut(s)	1060
AatII	GACGTC	1 cut(s)	238
Acc36I	ACCTGC	1 cut(s)	1060
AccBSI	CCGCTC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	1502
AccIII	TCCGGA	1 cut(s)	758
AciI	CCGC	4 cut(s)	54, 376, 731, 1390
AclWI	GGATC	4 cut(s)	286, 367, 1128, 1141
AcsI	RAATTY	2 cut(s)	290, 851
AcyI	GRCGYC	1 cut(s)	235
AfaI	GTAC	3 cut(s)	366, 824, 1044
AfiI	CCNNNNNNNGG	2 cut(s)	343, 1291
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	6 cut(s)	143, 187, 667, 1373, 1442, 1532
AjiI	CACGTC	1 cut(s)	491
AjnI	CCWGG	2 cut(s)	258, 1421
AluBI	AGCT	6 cut(s)	116, 386, 509, 654, 960, 1465
AluI	AGCT	6 cut(s)	116, 386, 509, 654, 960, 1465
Alw21I	GWGCWC	1 cut(s)	799
Alw26I	GTCTC	2 cut(s)	400, 1373
AlwI	GGATC	4 cut(s)	286, 367, 1128, 1141
AlwNI	CAGNNNCTG	2 cut(s)	389, 467
Aor13HI	TCCGGA	1 cut(s)	758
ApeKI	GCWGC	3 cut(s)	509, 545, 960
ApoI	RAATTY	2 cut(s)	290, 851
Asp700I	GAANNNNTTC	2 cut(s)	419, 852
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	3 cut(s)	473, 497, 976
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	889, 1468
AvaII	GGWCC	3 cut(s)	473, 497, 976
BamHI	GGATCC	1 cut(s)	1133
BauI	CACGAG	1 cut(s)	397
BbsI	GAAGAC	3 cut(s)	87, 261, 951
Bbv12I	GWGCWC	1 cut(s)	799
BbvI	GCAGC	3 cut(s)	496, 532, 947
BccI	CCATC	4 cut(s)	350, 711, 1289, 1340
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	260, 1423
BciVI	GTATCC	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	2 cut(s)	400, 1373
BfaI	CTAG	3 cut(s)	12, 513, 1238
BfmI	CTRYAG	4 cut(s)	154, 390, 459, 468
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	1060
BfuI	GTATCC	1 cut(s)	454
BisI	GCNGC	4 cut(s)	54, 510, 546, 961
BlsI	GCNGC	4 cut(s)	55, 511, 547, 962
Bme1390I	CCNGG	3 cut(s)	260, 495, 1423
Bme18I	GGWCC	3 cut(s)	473, 497, 976
BmgBI	CACGTC	1 cut(s)	491
BmgT120I	GGNCC	3 cut(s)	473, 497, 976
BmiI	GGNNCC	5 cut(s)	6, 135, 498, 885, 1135
BmrFI	CCNGG	3 cut(s)	260, 495, 1423
BmrI	ACTGGG	3 cut(s)	139, 1223, 1361
BmsI	GCATC	7 cut(s)	40, 272, 389, 445, 1231, 1270, 1328
BmuI	ACTGGG	3 cut(s)	139, 1223, 1361
BpiI	GAAGAC	3 cut(s)	87, 261, 951
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	372
BpuEI	CTTGAG	2 cut(s)	1071, 1505
BpuMI	CCSGG	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	328
BsaAI	YACGTR	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	63, 298
BsaWI	WCCGGW	1 cut(s)	758
BsaXI	ACNNNNNCTCC	6 cut(s)	81, 111, 806, 836, 994, 1024
Bsc4I	CCNNNNNNNGG	2 cut(s)	343, 1291
Bse1I	ACTGG	6 cut(s)	134, 280, 500, 811, 1229, 1367
Bse3DI	GCAATG	3 cut(s)	1031, 1210, 1216
Bse8I	GATNNNNATC	1 cut(s)	586
BseAI	TCCGGA	1 cut(s)	758
BseBI	CCWGG	2 cut(s)	260, 1423
BseCI	ATCGAT	1 cut(s)	328
BseDI	CCNNGG	2 cut(s)	63, 298
BseGI	GGATG	7 cut(s)	367, 672, 739, 1019, 1279, 1285, 1300
BseJI	GATNNNNATC	1 cut(s)	586
BseLI	CCNNNNNNNGG	2 cut(s)	343, 1291
BseMI	GCAATG	3 cut(s)	1031, 1210, 1216
BseMII	CTCAG	4 cut(s)	237, 363, 592, 600
BseNI	ACTGG	6 cut(s)	134, 280, 500, 811, 1229, 1367
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	496, 532, 947
BseYI	CCCAGC	1 cut(s)	1098
BsgI	GTGCAG	1 cut(s)	531
BshVI	ATCGAT	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	799
BsiSI	CCGG	4 cut(s)	100, 494, 759, 953
BslFI	GGGAC	2 cut(s)	510, 1312
BslI	CCNNNNNNNGG	2 cut(s)	343, 1291
BsmAI	GTCTC	2 cut(s)	400, 1373
BsmFI	GGGAC	2 cut(s)	510, 1312
BsmI	GAATGC	1 cut(s)	1438
Bsp1286I	GDGCHC	1 cut(s)	799
Bsp13I	TCCGGA	1 cut(s)	758
Bsp1407I	TGTACA	1 cut(s)	822
Bsp143I	GATC	5 cut(s)	214, 278, 329, 359, 1133
BspACI	CCGC	4 cut(s)	54, 376, 731, 1390
BspCNI	CTCAG	4 cut(s)	238, 364, 591, 601
BspDI	ATCGAT	1 cut(s)	328
BspEI	TCCGGA	1 cut(s)	758
BspHI	TCATGA	1 cut(s)	799
BspLI	GGNNCC	5 cut(s)	6, 135, 498, 885, 1135
BspMAI	CTGCAG	2 cut(s)	394, 472
BspMI	ACCTGC	1 cut(s)	1060
BspPI	GGATC	4 cut(s)	286, 367, 1128, 1141
BsrBI	CCGCTC	1 cut(s)	376
BsrDI	GCAATG	3 cut(s)	1031, 1210, 1216
BsrGI	TGTACA	1 cut(s)	822
BsrI	ACTGG	6 cut(s)	134, 280, 500, 811, 1229, 1367
BssECI	CCNNGG	2 cut(s)	63, 298
BssMI	GATC	5 cut(s)	214, 278, 329, 359, 1133
BssNAI	GTATAC	1 cut(s)	1503
BssNI	GRCGYC	1 cut(s)	235
BssSI	CACGAG	1 cut(s)	397
Bst1107I	GTATAC	1 cut(s)	1503
Bst2BI	CACGAG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	260, 1423
Bst4CI	ACNGT	3 cut(s)	463, 911, 984
Bst6I	CTCTTC	1 cut(s)	1437
BstACI	GRCGYC	1 cut(s)	235
BstAUI	TGTACA	1 cut(s)	822
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	378, 656
BstDEI	CTNAG	9 cut(s)	23, 246, 372, 578, 609, 628, 857, 936, 1114
BstDSI	CCRYGG	1 cut(s)	63
BstF5I	GGATG	7 cut(s)	367, 672, 739, 1019, 1279, 1285, 1300
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	5 cut(s)	217, 281, 332, 362, 1136
BstMAI	GTCTC	2 cut(s)	400, 1373
BstMBI	GATC	5 cut(s)	214, 278, 329, 359, 1133
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 59
BstNI	CCWGG	2 cut(s)	260, 1423
BstNSI	RCATGY	4 cut(s)	795, 952, 974, 1024
BstSCI	CCNGG	3 cut(s)	258, 493, 1421
BstSFI	CTRYAG	4 cut(s)	154, 390, 459, 468
BstV1I	GCAGC	3 cut(s)	496, 532, 947
BstV2I	GAAGAC	3 cut(s)	87, 261, 951
BstX2I	RGATCY	1 cut(s)	1133
BstYI	RGATCY	1 cut(s)	1133
BstZ17I	GTATAC	1 cut(s)	1503
Bsu15I	ATCGAT	1 cut(s)	328
BsuI	GTATCC	1 cut(s)	454
BsuTUI	ATCGAT	1 cut(s)	328
BtgI	CCRYGG	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	491
BtsCI	GGATG	7 cut(s)	367, 672, 739, 1019, 1279, 1285, 1300
BveI	ACCTGC	1 cut(s)	1060
Cac8I	GCNNGC	2 cut(s)	378, 656
CaiI	CAGNNNCTG	2 cut(s)	389, 467
CciI	TCATGA	1 cut(s)	799
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	3 cut(s)	473, 497, 976
ClaI	ATCGAT	1 cut(s)	328
CseI	GACGC	1 cut(s)	1309
Csp6I	GTAC	3 cut(s)	365, 823, 1043
CspCI	CAANNNNNGTGG	2 cut(s)	45, 80
CviAII	CATG	8 cut(s)	786, 792, 800, 949, 971, 1021, 1059, 1307
CviQI	GTAC	3 cut(s)	365, 823, 1043
DdeI	CTNAG	9 cut(s)	23, 246, 372, 578, 609, 628, 857, 936, 1114
DpnI	GATC	5 cut(s)	216, 280, 331, 361, 1135
DpnII	GATC	5 cut(s)	214, 278, 329, 359, 1133
Eam1104I	CTCTTC	1 cut(s)	1437
EarI	CTCTTC	1 cut(s)	1437
Eco32I	GATATC	2 cut(s)	624, 1363
Eco47I	GGWCC	3 cut(s)	473, 497, 976
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	2 cut(s)	258, 1421
EcoRV	GATATC	2 cut(s)	624, 1363
FaeI	CATG	8 cut(s)	789, 795, 803, 952, 974, 1024, 1062, 1310
FaqI	GGGAC	2 cut(s)	510, 1312
FatI	CATG	8 cut(s)	785, 791, 799, 948, 970, 1020, 1058, 1306
FauI	CCCGC	1 cut(s)	369
FauNDI	CATATG	1 cut(s)	867
FblI	GTMKAC	1 cut(s)	1502
Fnu4HI	GCNGC	4 cut(s)	54, 510, 546, 961
FokI	GGATG	7 cut(s)	354, 659, 746, 1026, 1286, 1292, 1307
Fsp4HI	GCNGC	4 cut(s)	54, 510, 546, 961
FspBI	CTAG	3 cut(s)	12, 513, 1238
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	4 cut(s)	54, 510, 546, 961
GsaI	CCCAGC	1 cut(s)	1102
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	106
HapII	CCGG	4 cut(s)	100, 494, 759, 953
HgaI	GACGC	1 cut(s)	1309
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	235
Hin1II	CATG	8 cut(s)	789, 795, 803, 952, 974, 1024, 1062, 1310
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	1449
HindII	GTYRAC	1 cut(s)	1449
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	3 cut(s)	347, 536, 1381
HpaII	CCGG	4 cut(s)	100, 494, 759, 953
HphI	GGTGA	2 cut(s)	889, 1468
Hpy166II	GTNNAC	5 cut(s)	823, 825, 907, 1449, 1503
Hpy188I	TCNGA	8 cut(s)	272, 289, 302, 581, 592, 980, 1191, 1258
Hpy8I	GTNNAC	5 cut(s)	823, 825, 907, 1449, 1503
HpyAV	CCTTC	5 cut(s)	181, 187, 607, 827, 1147
HpyCH4III	ACNGT	3 cut(s)	463, 911, 984
HpyCH4IV	ACGT	3 cut(s)	226, 235, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 59
HpyF3I	CTNAG	9 cut(s)	23, 246, 372, 578, 609, 628, 857, 936, 1114
HpySE526I	ACGT	3 cut(s)	226, 235, 490
Hsp92I	GRCGYC	1 cut(s)	235
Hsp92II	CATG	8 cut(s)	789, 795, 803, 952, 974, 1024, 1062, 1310
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	758
Kzo9I	GATC	5 cut(s)	214, 278, 329, 359, 1133
LmnI	GCTCC	4 cut(s)	10, 133, 506, 651
Lsp1109I	GCAGC	3 cut(s)	496, 532, 947
LweI	GCATC	7 cut(s)	40, 272, 389, 445, 1231, 1270, 1328
MaeI	CTAG	3 cut(s)	12, 513, 1238
MaeII	ACGT	3 cut(s)	226, 235, 490
MaeIII	GTNAC	3 cut(s)	1016, 1231, 1488
MalI	GATC	5 cut(s)	216, 280, 331, 361, 1135
MbiI	CCGCTC	1 cut(s)	376
MboI	GATC	5 cut(s)	214, 278, 329, 359, 1133
MboII	GAAGA	6 cut(s)	92, 209, 266, 860, 956, 1454
MflI	RGATCY	1 cut(s)	1133
MhlI	GDGCHC	1 cut(s)	799
MluCI	AATT	7 cut(s)	69, 165, 290, 418, 667, 851, 898
MlyI	GAGTC	2 cut(s)	341, 1375
MmeI	TCCRAC	3 cut(s)	484, 980, 1003
MroI	TCCGGA	1 cut(s)	758
MroXI	GAANNNNTTC	2 cut(s)	419, 852
MseI	TTAA	3 cut(s)	87, 990, 1511
MslI	CAYNNNNRTG	4 cut(s)	580, 784, 790, 1311
MspI	CCGG	4 cut(s)	100, 494, 759, 953
MspR9I	CCNGG	3 cut(s)	260, 495, 1423
Mva1269I	GAATGC	1 cut(s)	1438
MvaI	CCWGG	2 cut(s)	260, 1423
MwoI	GCNNNNNNNGC	2 cut(s)	50, 59
NciI	CCSGG	1 cut(s)	495
NdeI	CATATG	1 cut(s)	867
NdeII	GATC	5 cut(s)	214, 278, 329, 359, 1133
NlaIII	CATG	8 cut(s)	789, 795, 803, 952, 974, 1024, 1062, 1310
NlaIV	GGNNCC	5 cut(s)	6, 135, 498, 885, 1135
NmuCI	GTSAC	2 cut(s)	1016, 1231
NspI	RCATGY	4 cut(s)	795, 952, 974, 1024
PagI	TCATGA	1 cut(s)	799
PaqCI	CACCTGC	1 cut(s)	1060
PcsI	WCGNNNNNNNCGW	2 cut(s)	232, 334
PctI	GAATGC	1 cut(s)	1438
PdmI	GAANNNNTTC	2 cut(s)	419, 852
PfeI	GAWTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	493
PkrI	GCNGC	4 cut(s)	55, 511, 547, 962
PleI	GAGTC	2 cut(s)	341, 1375
PpsI	GAGTC	2 cut(s)	341, 1375
Ppu21I	YACGTR	1 cut(s)	227
PsiI	TTATAA	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	258, 1421
PspFI	CCCAGC	1 cut(s)	1098
PspGI	CCWGG	2 cut(s)	258, 1421
PspN4I	GGNNCC	5 cut(s)	6, 135, 498, 885, 1135
PspPI	GGNCC	3 cut(s)	473, 497, 976
PstI	CTGCAG	2 cut(s)	394, 472
PstNI	CAGNNNCTG	2 cut(s)	389, 467
PsuI	RGATCY	1 cut(s)	1133
RsaI	GTAC	3 cut(s)	366, 824, 1044
RsaNI	GTAC	3 cut(s)	365, 823, 1043
RseI	CAYNNNNRTG	4 cut(s)	580, 784, 790, 1311
SaqAI	TTAA	3 cut(s)	87, 990, 1511
SatI	GCNGC	4 cut(s)	54, 510, 546, 961
Sau3AI	GATC	5 cut(s)	214, 278, 329, 359, 1133
Sau96I	GGNCC	3 cut(s)	473, 497, 976
SchI	GAGTC	2 cut(s)	341, 1375
ScrFI	CCNGG	3 cut(s)	260, 495, 1423
SduI	GDGCHC	1 cut(s)	799
SfaNI	GCATC	7 cut(s)	40, 272, 389, 445, 1231, 1270, 1328
SfcI	CTRYAG	4 cut(s)	154, 390, 459, 468
SinI	GGWCC	3 cut(s)	473, 497, 976
SmiMI	CAYNNNNRTG	4 cut(s)	580, 784, 790, 1311
SmlI	CTYRAG	2 cut(s)	1086, 1484
SmoI	CTYRAG	2 cut(s)	1086, 1484
Sse9I	AATT	7 cut(s)	69, 165, 290, 418, 667, 851, 898
SsiI	CCGC	4 cut(s)	54, 376, 731, 1390
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	3 cut(s)	12, 513, 1238
StyD4I	CCNGG	3 cut(s)	258, 493, 1421
TaaI	ACNGT	3 cut(s)	463, 911, 984
TaiI	ACGT	3 cut(s)	229, 238, 493
TaqI	TCGA	1 cut(s)	328
TasI	AATT	7 cut(s)	69, 165, 290, 418, 667, 851, 898
TatI	WGTACW	3 cut(s)	364, 822, 1042
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	3 cut(s)	87, 990, 1511
Tru9I	TTAA	3 cut(s)	87, 990, 1511
TseFI	GTSAC	2 cut(s)	1016, 1231
TseI	GCWGC	3 cut(s)	509, 545, 960
Tsp45I	GTSAC	2 cut(s)	1016, 1231
TspDTI	ATGAA	7 cut(s)	651, 762, 816, 957, 1047, 1211, 1295
VpaK11BI	GGWCC	3 cut(s)	473, 497, 976
XapI	RAATTY	2 cut(s)	290, 851
XceI	RCATGY	4 cut(s)	795, 952, 974, 1024
XmiI	GTMKAC	1 cut(s)	1502
XmnI	GAANNNNTTC	2 cut(s)	419, 852
XspI	CTAG	3 cut(s)	12, 513, 1238
ZraI	GACGTC	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.