Rh6CG028600

Histone-lysine n-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
2554148 .. 2554456
309 bp
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UTR
Exon/CDS
Intron
Rh6CG028600.1

Sequence Viewer

Length: 216 bp
ATGGCTCCCAGTAAAACGCAGATTGCTAATGCTTTTAAAGCGGCAAAGGCCTTGGGAATTAGTACTGAAGAAATCAGACCTGTCCTCAGAGACTTGTACATCAGACCTGTCCTCAGAGACTTGTACAAATCTTTTCACAAGAATTGGGAGCATATTGAAGCAGACAACTACAGGGTTCTATTTGATAGATACTTTGAAATGAAGGAGAATAAGTAG

Protein Analysis

71

Amino Acids

8.49

Weight (kDa)

9.34

Isoelectric Point (pI)

51.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 34 - 70 2.5e-10 Ubiquitin-binding WIYLD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 3 cut(s) 64, 98, 125
AgsI TTSAA 2 cut(s) 158, 197
Alw26I GTCTC 2 cut(s) 84, 111
AoxI GGCC 1 cut(s) 48
BcoDI GTCTC 2 cut(s) 84, 111
BfmI CTRYAG 1 cut(s) 169
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmcAI AGTACT 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 3
BmuI ACTGGG 1 cut(s) 3
BsaJI CCNNGG 1 cut(s) 51
BsaXI ACNNNNNCTCC 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 51
BseMII CTCAG 2 cut(s) 100, 127
BseNI ACTGG 1 cut(s) 9
BshFI GGCC 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 84, 111
BsnI GGCC 1 cut(s) 50
Bsp1407I TGTACA 2 cut(s) 96, 123
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 99, 126
BspLI GGNNCC 1 cut(s) 6
BsrGI TGTACA 2 cut(s) 96, 123
BsrI ACTGG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 51
BstAUI TGTACA 2 cut(s) 96, 123
BstDEI CTNAG 2 cut(s) 86, 113
BstMAI GTCTC 2 cut(s) 84, 111
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstSFI CTRYAG 1 cut(s) 169
BsuRI GGCC 1 cut(s) 50
Csp6I GTAC 3 cut(s) 63, 97, 124
CviJI RGCY 2 cut(s) 5, 50
CviKI_1 RGCY 2 cut(s) 5, 50
CviQI GTAC 3 cut(s) 63, 97, 124
DdeI CTNAG 2 cut(s) 86, 113
DraI TTTAAA 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaiI YATR 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 50
Hpy188I TCNGA 4 cut(s) 77, 89, 104, 116
HpyAV CCTTC 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpyF3I CTNAG 2 cut(s) 86, 113
LmnI GCTCC 2 cut(s) 10, 148
LpnPI CCDG 4 cut(s) 22, 93, 120, 157
MboII GAAGA 1 cut(s) 80
MluCI AATT 2 cut(s) 57, 142
MnlI CCTC 2 cut(s) 95, 122
MseI TTAA 1 cut(s) 36
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NlaIV GGNNCC 1 cut(s) 6
PceI AGGCCT 1 cut(s) 50
PkrI GCNGC 1 cut(s) 43
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 3 cut(s) 64, 98, 125
RsaNI GTAC 3 cut(s) 63, 97, 124
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 42
ScaI AGTACT 1 cut(s) 64
SetI ASST 2 cut(s) 82, 109
SfcI CTRYAG 1 cut(s) 169
SgeI CNNG 8 cut(s) 21, 64, 92, 106, 119, 133, 151, 184
Sse9I AATT 2 cut(s) 57, 142
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 50
StyI CCWWGG 1 cut(s) 51
TasI AATT 2 cut(s) 57, 142
TatI WGTACW 3 cut(s) 62, 96, 123
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TspDTI ATGAA 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.