Rroxscaffold_3G00231620

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000439
Physical Location & Seq
Forward (+)
16900311 .. 16906976
6666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231620.1

Sequence Viewer

Length: 3150 bp
ATGTGGCCGAAAGTTAGCAAAATTGCAAAGGCCTGTCGGGCAATGAAAGAATTTGGCATTGCTGAAGTCCAAACAAAGGCTGCGCTGAAGCAACTTCTGGAAGTGTATGAAAATAACTGGGATTTCATTGAAGCTGATGATTACAAAGAACTCTTTAATTTTATTGTACCAGATAACAAGAAGCCAAATGAAGAGAAAGTGCAGCCCAAGGTAAAAGGCGCTTTGATGCGTGAATCAAAGGTGAGTTTTGCTTTATCTTTTATATTCCATTCCCTATTTCTTGTTCCCTACCAGTCATTTGACTGCTGTAAGAGAGTGAATTCTAAGAACAAACAAGCTCCATCATATGATACAACTGAAGTTATTGAGCGTCCAACCAAGAGATATTGCACCAGGCAACAGAAAAATCAGCCAGTATCTCATACGAAATACTCTGAATCAAGCTTGAGAAGAACTCCACCAGAAAGTATGCATATTAAGTTTGATGAAGAATCTGAGGAATCTGAGGAGTGGCAGCCATTAGTGAGAAAACCTCAACAAAGGCACACAAATCCTCAAGAAGTTTGGGTTGCGGATAATAAGGTTGGTCCTGTGCCTGATGACTGTCCAGGACTTGAGATAAGGCCGAATCTTATATGTGAAGGTAACTTCTCAGATTCTGATGGTTGTGATGTTGGTGAAGATGTGATAAAGTACCTGCAACTGAAATCTAGGAACAAACAACCTCCATCATATGATACACCTGAAGTCATTGAGTGGCAAGCCAAGAGATTTCGCACCAGGCAACAGAAAAATCAGCCTTCATCTCTTACCAAATACTCTGAATCAAGCTTGAGAAGAACTCCAGGAAAAATGCATGTGAAGTTTGATGATGAATCTGAGGAATCTGAGGATTCGCAGCCATTAGTGAGAAAACCTCGACAAAGACACATAAATCCACAAGAAGTTTGGGTCACTAGGAATAACATTGATAATGTGCTTGATGACTGTACAGAACTTGAAATAGGTCCCAGTCCTGTATGTGAAGGTAACTTCACAAATTCTGATGGTTGTGATGTTTATGAAGGTGTGGTGAAGTACCTGCCAGTGGAATTATTGAATGAGAGCAATAGTGTGAGTGTCTCAGATTGGTCTCAGACTGATGTTGCATCTTCTTCCCCAGTGAAAAATCCTTTGATTTCTAGCTCTTCGCAAAAGTCTGGTTTTGATCTTCCTAACGGTGAAGTATCCCAAGAAATGATGGAAGAGAAATGCATAAAATCATATAGGACTGGAGAATGCCGCTCCATGGCGATAGTGACTAATGTCACTAAGAATAAGCCAGAATTAATAACTTCTAATGAACAAGATCAAGGCAGTAAGTGCAGTGGTCTGGGTTCTTTTAACGAGCTATTTGTTGATCAGAATCTTATCAAGCCTATACGTATACCTAATTATAGAGCATTGGGTAGTTTTGAAAGTCTTTGCAGCTTAATTGGTATTGAAGTTAAGGATATGGAGAACATCTGTGGGGAAAGTGCAAAGAGATCAAGGGTTTCCAAAGGTCAAAAAACATCACAATTATGCAAGGTGGAAGCCGGGCATAAATACCATTCTTCACTTAGAGTTACAGAGTCTGCATTTAACATTGATGACATAACGAGAGGTGAAGAAAGATTTAAGATTTCCTTGGAAAATGGAAGAAATGCCGAGTTGCCAACCTTTTCTTACATCGCGCAGAATTTAATTTATAATAAGGCCTCTGTGAGATTTGCACTTGCTAATATATCCAATGAGGGTTGCTGTTCAAAATGTTATGGGGACTGTCTTACATCATCAATTCCTTGTCTTTGTGTGATTGCCAATGGGGGTGAATGTGCTTACACGCCAGGAGGATTGGTCAAGGAGAAGTTTCTGGAAGAATGTATATCTATGAAGCGTGAGCCTGAAAAGCACCCATACTTCTACTGTAAAAAGTGCCCACTGGTAAGGTCAGAGAATGCGAAGAGTTCTGTGGCATGCAAGGGACATATGTTACGGAGGTTTATAAAGGAATGCTCTTATAAATGCGGTTGTAACAGGAGCTGTGGAAACCGGATTGTACAGAAAGGCATTGCTGTGAAATTGCAGGTATTTTTGACACCCGAAGGGAAAGGGTGGGGTCTAAGAACACTGGAGGCATTGCCAAGAGGGGCTTTTGTTTGTGAATATGTTGGAGAGATAGTAACCATCGACGAACTACATGAGCGAAGTGTGCTGAGTATTGGTAAAGAGCATACCTACCCAGTACTACTAGATGCAGACTGGGGTTCACAGGATGTGTTGAAAGATGAAAAGGCTCTTTGCTTGGACACTACAGTCTACGGAAATGTTGCAAGATTCATTAACCACAGATGTTCTGATGCTACATTGGTCGAGATCCCAGTTGAAGTGGAGACCCCAGATCGTCACTATTATCATGTTGCCCTTTTCACAACAAGGGATGTTGGTGCTATGGAGGAGCTCACTTGGGACTATGGCATTTCCTTTCATGACCATAATTATCCTGTGAAGCATTTCCGTTGTCTCTGTGGAAGTCCATTATGTCGTGACCGCAAAGATATAAAACGCAAAATTACATATGTCCGACGACGGCGTAAGGACGGGAGGGGTAACAACAAGGATGGTTTGCTTGATCACTTGGCAAAGGATCTTGCTACGGGTGCACCGAGAGAGGAAATACAAGTAGAACCTGATGCATTGATGCAGCTTGAGGTTGTCCCGTCTACAGGTGCACTGAGGGAGGAGATACAAGTAGCACCCCATGAATCCAGGCAGCCCGAGATTGGCCCATCTACGGGTGCGCCGAAAGCGGAGATACAAGTTGCTCCAGATCCATGCATGCAGCTTCAGGTTATCCCTTCTACTCCTAGAATTGAACCCAGGAAGGCATTGCACTGTTTAAATTGGGAGCCAGTTAGGGATAGCTGCTCCTCTTCTTCCACTATGTATCTGGCCAAGGAGGTAGCAGACTTGCGGGCTCAGCTCGAGGCTGAGAAGGCAGCTCGAGAGAAGGACCAGATAAACTTTGAGGCTCATCGTACTCAATTTCAGGCAGTGATGCAGCAACTATCTACCCTTCTCCCTGGGTTTCAGGTACCACAAGCTTCTGTTCAGATGCAGCTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

1049

Amino Acids

118.63

Weight (kDa)

6.33

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 6 - 55 1.9e-15 Ubiquitin-binding WIYLD domain
SET PF00856 712 - 833 9e-18 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1731, 2027, 2043
AasI GACNNNNNNGTC 1 cut(s) 2336
Acc36I ACCTGC 3 cut(s) 705, 1089, 2098
Acc65I GGTACC 1 cut(s) 3115
AccB1I GGYRCC 1 cut(s) 3115
AccBSI CCGCTC 1 cut(s) 1284
AccI GTMKAC 3 cut(s) 1426, 2340, 2744
AccII CGCG 1 cut(s) 1715
AciI CCGC 6 cut(s) 572, 1282, 2049, 2572, 2831, 2995
AclWI GGATC 3 cut(s) 2392, 2676, 2846
AcoI YGGCCR 2 cut(s) 5, 2973
AcsI RAATTY 4 cut(s) 50, 319, 1039, 1720
AcuI CTGAAG 5 cut(s) 84, 107, 378, 765, 2852
AfaI GTAC 8 cut(s) 168, 695, 991, 1079, 2082, 2268, 3061, 3117
AfiI CCNNNNNNNGG 7 cut(s) 76, 1087, 1288, 2747, 2804, 2815, 2816
AgsI TTSAA 9 cut(s) 131, 1001, 1099, 1457, 1484, 1788, 2305, 2408, 2897
AjnI CCWGG 8 cut(s) 392, 607, 779, 844, 1867, 2789, 2900, 3103
Alw21I GWGCWC 3 cut(s) 2484, 2686, 2755
Alw26I GTCTC 4 cut(s) 1126, 1137, 2408, 2549
Alw44I GTGCAC 2 cut(s) 2682, 2751
AlwI GGATC 3 cut(s) 2392, 2676, 2846
AlwNI CAGNNNCTG 3 cut(s) 659, 1616, 2064
Ama87I CYCGRG 3 cut(s) 2798, 3005, 3024
AoxI GGCC 6 cut(s) 5, 30, 623, 1737, 2806, 2973
ApaLI GTGCAC 2 cut(s) 2682, 2751
ApoI RAATTY 4 cut(s) 50, 319, 1039, 1720
AseI ATTAAT 1 cut(s) 1328
Asp700I GAANNNNTTC 1 cut(s) 2534
Asp718I GGTACC 1 cut(s) 3115
AspLEI GCGC 4 cut(s) 85, 221, 1717, 2824
AspS9I GGNCC 4 cut(s) 587, 1007, 2807, 3034
AsuC2I CCSGG 1 cut(s) 1579
AsuHPI GGTGA 6 cut(s) 253, 689, 1084, 1232, 1658, 1862
AvaI CYCGRG 3 cut(s) 2798, 3005, 3024
AvaII GGWCC 3 cut(s) 587, 1007, 3034
BaeGI GKGCMC 3 cut(s) 1961, 2686, 2755
BalI TGGCCA 1 cut(s) 2975
BanI GGYRCC 1 cut(s) 3115
BanII GRGCYC 2 cut(s) 2484, 3001
Bbv12I GWGCWC 3 cut(s) 2484, 2686, 2755
BccI CCATC 8 cut(s) 349, 656, 736, 1040, 1234, 2216, 2636, 2818
BceAI ACGGC 1 cut(s) 2627
BciT130I CCWGG 8 cut(s) 394, 609, 781, 846, 1869, 2791, 2902, 3105
BciVI GTATCC 1 cut(s) 1237
BclI TGATCA 2 cut(s) 1399, 2653
BcnI CCSGG 1 cut(s) 1579
BcoDI GTCTC 4 cut(s) 1126, 1137, 2408, 2549
BfaI CTAG 5 cut(s) 711, 957, 1182, 2273, 2889
BfmI CTRYAG 2 cut(s) 2334, 2745
BfoI RGCGCY 1 cut(s) 222
BfuAI ACCTGC 3 cut(s) 705, 1089, 2098
BfuI GTATCC 1 cut(s) 1237
BglI GCCNNNNNGGC 1 cut(s) 38
BlpI GCTNAGC 1 cut(s) 3000
BmcAI AGTACT 1 cut(s) 2268
Bme1390I CCNGG 9 cut(s) 394, 609, 781, 846, 1579, 1869, 2791, 2902, 3105
Bme18I GGWCC 3 cut(s) 587, 1007, 3034
BmeT110I CYCGRG 3 cut(s) 2798, 3005, 3024
BmgT120I GGNCC 4 cut(s) 587, 1007, 2807, 3034
BmiI GGNNCC 3 cut(s) 1009, 2931, 3117
BmrFI CCNGG 9 cut(s) 394, 609, 781, 846, 1579, 1869, 2791, 2902, 3105
BmrI ACTGGG 6 cut(s) 127, 1005, 1154, 2258, 2293, 2396
BmsI GCATC 8 cut(s) 216, 1157, 2266, 2371, 2704, 2712, 3069, 3126
BmuI ACTGGG 6 cut(s) 127, 1005, 1154, 2258, 2293, 2396
BoxI GACNNNNGTC 1 cut(s) 1304
BplI GAGNNNNNCTC 8 cut(s) 439, 471, 517, 549, 826, 858, 901, 933
BpmI CTGGAG 4 cut(s) 828, 1293, 2174, 2832
Bpu1102I GCTNAGC 1 cut(s) 3000
BpuEI CTTGAG 5 cut(s) 466, 540, 635, 853, 2750
BpuMI CCSGG 1 cut(s) 1579
BsaAI YACGTR 1 cut(s) 1424
BsaBI GATNNNNATC 1 cut(s) 1404
BsaI GGTCTC 2 cut(s) 1137, 2408
BsaJI CCNNGG 7 cut(s) 207, 1287, 1668, 2900, 2976, 3103, 3104
BsaWI WCCGGW 1 cut(s) 2073
BsaXI ACNNNNNCTCC 4 cut(s) 1863, 1893, 2187, 2217
Bsc4I CCNNNNNNNGG 7 cut(s) 76, 1087, 1288, 2747, 2804, 2815, 2816
Bse3DI GCAATG 5 cut(s) 48, 57, 2091, 2159, 2909
Bse8I GATNNNNATC 1 cut(s) 1404
BseBI CCWGG 8 cut(s) 394, 609, 781, 846, 1869, 2791, 2902, 3105
BseDI CCNNGG 7 cut(s) 207, 1287, 1668, 2900, 2976, 3103, 3104
BseGI GGATG 3 cut(s) 2302, 2467, 2647
BseJI GATNNNNATC 1 cut(s) 1404
BseLI CCNNNNNNNGG 7 cut(s) 76, 1087, 1288, 2747, 2804, 2815, 2816
BseMI GCAATG 5 cut(s) 48, 57, 2091, 2159, 2909
BseRI GAGGAG 4 cut(s) 521, 2492, 2777, 2941
BseSI GKGCMC 3 cut(s) 1961, 2686, 2755
BsgI GTGCAG 2 cut(s) 221, 1384
Bsh1236I CGCG 1 cut(s) 1715
BshFI GGCC 6 cut(s) 7, 32, 625, 1739, 2808, 2975
BshNI GGYRCC 1 cut(s) 3115
BsiHKAI GWGCWC 3 cut(s) 2484, 2686, 2755
BsiHKCI CYCGRG 3 cut(s) 2798, 3005, 3024
BsiSI CCGG 2 cut(s) 1578, 2074
BslFI GGGAC 5 cut(s) 993, 1814, 2019, 2504, 2723
BslI CCNNNNNNNGG 7 cut(s) 76, 1087, 1288, 2747, 2804, 2815, 2816
BsmAI GTCTC 4 cut(s) 1126, 1137, 2408, 2549
BsmFI GGGAC 5 cut(s) 993, 1814, 2019, 2504, 2723
BsmI GAATGC 3 cut(s) 1283, 1984, 2039
BsnI GGCC 6 cut(s) 7, 32, 625, 1739, 2808, 2975
Bso31I GGTCTC 2 cut(s) 1137, 2408
BsoBI CYCGRG 3 cut(s) 2798, 3005, 3024
Bsp1286I GDGCHC 5 cut(s) 1961, 2484, 2686, 2755, 3001
Bsp1407I TGTACA 2 cut(s) 989, 2080
Bsp143I GATC 9 cut(s) 1207, 1348, 1399, 1526, 2397, 2422, 2653, 2668, 2851
Bsp1720I GCTNAGC 1 cut(s) 3000
Bsp19I CCATGG 1 cut(s) 1287
BspACI CCGC 6 cut(s) 572, 1282, 2049, 2572, 2831, 2995
BspANI GGCC 6 cut(s) 7, 32, 625, 1739, 2808, 2975
BspFNI CGCG 1 cut(s) 1715
BspHI TCATGA 1 cut(s) 2509
BspLI GGNNCC 3 cut(s) 1009, 2931, 3117
BspMI ACCTGC 3 cut(s) 705, 1089, 2098
BspPI GGATC 3 cut(s) 2392, 2676, 2846
BspQI GCTCTTC 1 cut(s) 1192
BspT107I GGYRCC 1 cut(s) 3115
BspTNI GGTCTC 2 cut(s) 1137, 2408
BsrBI CCGCTC 1 cut(s) 1284
BsrDI GCAATG 5 cut(s) 48, 57, 2091, 2159, 2909
BsrGI TGTACA 2 cut(s) 989, 2080
BssECI CCNNGG 7 cut(s) 207, 1287, 1668, 2900, 2976, 3103, 3104
BssMI GATC 9 cut(s) 1207, 1348, 1399, 1526, 2397, 2422, 2653, 2668, 2851
BssNAI GTATAC 1 cut(s) 1427
BssT1I CCWWGG 4 cut(s) 207, 1287, 1668, 2976
Bst1107I GTATAC 1 cut(s) 1427
Bst2UI CCWGG 8 cut(s) 394, 609, 781, 846, 1869, 2791, 2902, 3105
Bst4CI ACNGT 7 cut(s) 605, 989, 1220, 1805, 1949, 2338, 2918
Bst6I CTCTTC 5 cut(s) 186, 1192, 1239, 1979, 2959
BstAPI GCANNNNNTGC 1 cut(s) 1362
BstAUI TGTACA 2 cut(s) 989, 2080
BstBAI YACGTR 1 cut(s) 1424
BstC8I GCNNGC 4 cut(s) 762, 1999, 2861, 2997
BstDSI CCRYGG 1 cut(s) 1287
BstF5I GGATG 3 cut(s) 2302, 2467, 2647
BstFNI CGCG 1 cut(s) 1715
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 4 cut(s) 85, 221, 1717, 2824
BstKTI GATC 9 cut(s) 1210, 1351, 1402, 1529, 2400, 2425, 2656, 2671, 2854
BstMAI GTCTC 4 cut(s) 1126, 1137, 2408, 2549
BstMBI GATC 9 cut(s) 1207, 1348, 1399, 1526, 2397, 2422, 2653, 2668, 2851
BstMWI GCNNNNNNNGC 8 cut(s) 38, 1362, 1930, 2233, 2681, 2828, 3001, 3017
BstNI CCWGG 8 cut(s) 394, 609, 781, 846, 1869, 2791, 2902, 3105
BstNSI RCATGY 3 cut(s) 860, 2001, 2863
BstPAI GACNNNNGTC 1 cut(s) 1304
BstSCI CCNGG 9 cut(s) 392, 607, 779, 844, 1577, 1867, 2789, 2900, 3103
BstSFI CTRYAG 2 cut(s) 2334, 2745
BstSLI GKGCMC 3 cut(s) 1961, 2686, 2755
BstSNI TACGTA 1 cut(s) 1424
BstUI CGCG 1 cut(s) 1715
BstX2I RGATCY 3 cut(s) 2397, 2668, 2851
BstYI RGATCY 3 cut(s) 2397, 2668, 2851
BstZ17I GTATAC 1 cut(s) 1427
BsuI GTATCC 1 cut(s) 1237
BsuRI GGCC 6 cut(s) 7, 32, 625, 1739, 2808, 2975
BtgI CCRYGG 1 cut(s) 1287
BtgZI GCGATG 1 cut(s) 1696
BtsCI GGATG 3 cut(s) 2302, 2467, 2647
BtsI GCAGTG 2 cut(s) 1372, 3081
BtsIMutI CAGTG 8 cut(s) 1092, 1167, 1372, 1961, 2150, 2753, 2914, 3081
BveI ACCTGC 3 cut(s) 705, 1089, 2098
Cac8I GCNNGC 4 cut(s) 762, 1999, 2861, 2997
CaiI CAGNNNCTG 3 cut(s) 659, 1616, 2064
CciI TCATGA 1 cut(s) 2509
CfoI GCGC 4 cut(s) 85, 221, 1717, 2824
Cfr13I GGNCC 4 cut(s) 587, 1007, 2807, 3034
CseI GACGC 1 cut(s) 359
Csp6I GTAC 8 cut(s) 167, 694, 990, 1078, 2081, 2267, 3060, 3116
CviAII CATG 9 cut(s) 857, 1288, 1998, 2222, 2438, 2510, 2783, 2856, 2860
CviQI GTAC 8 cut(s) 167, 694, 990, 1078, 2081, 2267, 3060, 3116
DpnI GATC 9 cut(s) 1209, 1350, 1401, 1528, 2399, 2424, 2655, 2670, 2853
DpnII GATC 9 cut(s) 1207, 1348, 1399, 1526, 2397, 2422, 2653, 2668, 2851
DraI TTTAAA 1 cut(s) 2922
DrdI GACNNNNNNGTC 1 cut(s) 2336
DseDI GACNNNNNNGTC 1 cut(s) 2336
EaeI YGGCCR 2 cut(s) 5, 2973
Eam1104I CTCTTC 5 cut(s) 186, 1192, 1239, 1979, 2959
EarI CTCTTC 5 cut(s) 186, 1192, 1239, 1979, 2959
Ecl136II GAGCTC 1 cut(s) 2482
Eco105I TACGTA 1 cut(s) 1424
Eco130I CCWWGG 4 cut(s) 207, 1287, 1668, 2976
Eco147I AGGCCT 2 cut(s) 32, 1739
Eco24I GRGCYC 2 cut(s) 2484, 3001
Eco31I GGTCTC 2 cut(s) 1137, 2408
Eco47I GGWCC 3 cut(s) 587, 1007, 3034
Eco53kI GAGCTC 1 cut(s) 2482
Eco57I CTGAAG 5 cut(s) 84, 107, 378, 765, 2852
Eco88I CYCGRG 3 cut(s) 2798, 3005, 3024
EcoICRI GAGCTC 1 cut(s) 2482
EcoO109I RGGNCCY 1 cut(s) 1007
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 8 cut(s) 392, 607, 779, 844, 1867, 2789, 2900, 3103
EcoT14I CCWWGG 4 cut(s) 207, 1287, 1668, 2976
EcoT22I ATGCAT 5 cut(s) 474, 858, 1256, 2719, 2861
EcoT38I GRGCYC 2 cut(s) 2484, 3001
ErhI CCWWGG 4 cut(s) 207, 1287, 1668, 2976
FaeI CATG 9 cut(s) 860, 1291, 2001, 2225, 2441, 2513, 2786, 2859, 2863
FalI AAGNNNNNCTT 4 cut(s) 1652, 1684, 2158, 2190
FaqI GGGAC 5 cut(s) 993, 1814, 2019, 2504, 2723
FatI CATG 9 cut(s) 856, 1287, 1997, 2221, 2437, 2509, 2782, 2855, 2859
FauI CCCGC 1 cut(s) 2988
FauNDI CATATG 4 cut(s) 346, 733, 2010, 2599
FbaI TGATCA 2 cut(s) 1399, 2653
FblI GTMKAC 3 cut(s) 1426, 2340, 2744
FokI GGATG 3 cut(s) 2309, 2474, 2654
FriOI GRGCYC 2 cut(s) 2484, 3001
FspBI CTAG 5 cut(s) 711, 957, 1182, 2273, 2889
GlaI GCGC 4 cut(s) 84, 220, 1716, 2823
GsuI CTGGAG 4 cut(s) 828, 1293, 2174, 2832
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 6 cut(s) 7, 32, 625, 1739, 2808, 2975
HapII CCGG 2 cut(s) 1578, 2074
HgaI GACGC 1 cut(s) 359
HhaI GCGC 4 cut(s) 85, 221, 1717, 2824
Hin1II CATG 9 cut(s) 860, 1291, 2001, 2225, 2441, 2513, 2786, 2859, 2863
Hin6I GCGC 4 cut(s) 83, 219, 1715, 2822
HinP1I GCGC 4 cut(s) 83, 219, 1715, 2822
HindIII AAGCTT 3 cut(s) 442, 829, 3123
HpaII CCGG 2 cut(s) 1578, 2074
HphI GGTGA 6 cut(s) 253, 689, 1084, 1232, 1658, 1862
Hpy166II GTNNAC 6 cut(s) 1427, 2291, 2341, 2684, 2745, 2753
Hpy188III TCNNGA 8 cut(s) 98, 557, 1895, 2395, 2510, 2567, 2849, 3026
Hpy8I GTNNAC 6 cut(s) 1427, 2291, 2341, 2684, 2745, 2753
Hpy99I CGWCG 3 cut(s) 2216, 2610, 2613
HpyCH4III ACNGT 7 cut(s) 605, 989, 1220, 1805, 1949, 2338, 2918
HpyCH4IV ACGT 1 cut(s) 1423
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 1362, 1930, 2233, 2681, 2828, 3001, 3017
HpySE526I ACGT 1 cut(s) 1423
Hsp92II CATG 9 cut(s) 860, 1291, 2001, 2225, 2441, 2513, 2786, 2859, 2863
HspAI GCGC 4 cut(s) 83, 219, 1715, 2822
KpnI GGTACC 1 cut(s) 3119
Ksp22I TGATCA 2 cut(s) 1399, 2653
Kzo9I GATC 9 cut(s) 1207, 1348, 1399, 1526, 2397, 2422, 2653, 2668, 2851
LguI GCTCTTC 1 cut(s) 1192
LmnI GCTCC 7 cut(s) 343, 1289, 2061, 2479, 2851, 2929, 2954
LweI GCATC 8 cut(s) 216, 1157, 2266, 2371, 2704, 2712, 3069, 3126
MaeI CTAG 5 cut(s) 711, 957, 1182, 2273, 2889
MaeII ACGT 1 cut(s) 1423
MalI GATC 9 cut(s) 1209, 1350, 1401, 1528, 2399, 2424, 2655, 2670, 2853
MbiI CCGCTC 1 cut(s) 1284
MboI GATC 9 cut(s) 1207, 1348, 1399, 1526, 2397, 2422, 2653, 2668, 2851
MflI RGATCY 3 cut(s) 2397, 2668, 2851
MhlI GDGCHC 5 cut(s) 1961, 2484, 2686, 2755, 3001
MlsI TGGCCA 1 cut(s) 2975
MluNI TGGCCA 1 cut(s) 2975
MlyI GAGTC 1 cut(s) 1622
MmeI TCCRAC 3 cut(s) 398, 2173, 2629
Mox20I TGGCCA 1 cut(s) 2975
Mph1103I ATGCAT 5 cut(s) 474, 858, 1256, 2719, 2861
MroXI GAANNNNTTC 1 cut(s) 2534
MscI TGGCCA 1 cut(s) 2975
MslI CAYNNNNRTG 2 cut(s) 1561, 2096
Msp20I TGGCCA 1 cut(s) 2975
MspI CCGG 2 cut(s) 1578, 2074
MspR9I CCNGG 9 cut(s) 394, 609, 781, 846, 1579, 1869, 2791, 2902, 3105
Mva1269I GAATGC 3 cut(s) 1283, 1984, 2039
MvaI CCWGG 8 cut(s) 394, 609, 781, 846, 1869, 2791, 2902, 3105
MvnI CGCG 1 cut(s) 1715
MwoI GCNNNNNNNGC 8 cut(s) 38, 1362, 1930, 2233, 2681, 2828, 3001, 3017
NciI CCSGG 1 cut(s) 1579
NcoI CCATGG 1 cut(s) 1287
NdeI CATATG 4 cut(s) 346, 733, 2010, 2599
NdeII GATC 9 cut(s) 1207, 1348, 1399, 1526, 2397, 2422, 2653, 2668, 2851
NlaIII CATG 9 cut(s) 860, 1291, 2001, 2225, 2441, 2513, 2786, 2859, 2863
NlaIV GGNNCC 3 cut(s) 1009, 2931, 3117
NmeAIII GCCGAG 1 cut(s) 1714
NmuCI GTSAC 5 cut(s) 952, 1297, 1306, 2426, 2567
NsiI ATGCAT 5 cut(s) 474, 858, 1256, 2719, 2861
NspI RCATGY 3 cut(s) 860, 2001, 2863
PaeI GCATGC 2 cut(s) 2001, 2863
PaeR7I CTCGAG 2 cut(s) 3005, 3024
PagI TCATGA 1 cut(s) 2509
PasI CCCWGGG 1 cut(s) 3104
PceI AGGCCT 2 cut(s) 32, 1739
PciSI GCTCTTC 1 cut(s) 1192
PcsI WCGNNNNNNNCGW 2 cut(s) 2684, 2822
PctI GAATGC 3 cut(s) 1283, 1984, 2039
PdmI GAANNNNTTC 1 cut(s) 2534
PfoI TCCNGGA 2 cut(s) 607, 844
PleI GAGTC 1 cut(s) 1621
PpsI GAGTC 1 cut(s) 1621
Ppu21I YACGTR 1 cut(s) 1424
PpuMI RGGWCCY 1 cut(s) 1007
PshAI GACNNNNGTC 1 cut(s) 1304
PshBI ATTAAT 1 cut(s) 1328
PsiI TTATAA 3 cut(s) 1731, 2027, 2043
Psp124BI GAGCTC 1 cut(s) 2484
Psp5II RGGWCCY 1 cut(s) 1007
Psp6I CCWGG 8 cut(s) 392, 607, 779, 844, 1867, 2789, 2900, 3103
PspGI CCWGG 8 cut(s) 392, 607, 779, 844, 1867, 2789, 2900, 3103
PspN4I GGNNCC 3 cut(s) 1009, 2931, 3117
PspPI GGNCC 4 cut(s) 587, 1007, 2807, 3034
PspPPI RGGWCCY 1 cut(s) 1007
PspXI VCTCGAGB 1 cut(s) 3005
PstNI CAGNNNCTG 3 cut(s) 659, 1616, 2064
PsuI RGATCY 3 cut(s) 2397, 2668, 2851
RsaI GTAC 8 cut(s) 168, 695, 991, 1079, 2082, 2268, 3061, 3117
RsaNI GTAC 8 cut(s) 167, 694, 990, 1078, 2081, 2267, 3060, 3116
RseI CAYNNNNRTG 2 cut(s) 1561, 2096
SacI GAGCTC 1 cut(s) 2484
SapI GCTCTTC 1 cut(s) 1192
Sau3AI GATC 9 cut(s) 1207, 1348, 1399, 1526, 2397, 2422, 2653, 2668, 2851
Sau96I GGNCC 4 cut(s) 587, 1007, 2807, 3034
ScaI AGTACT 1 cut(s) 2268
SchI GAGTC 1 cut(s) 1622
ScrFI CCNGG 9 cut(s) 394, 609, 781, 846, 1579, 1869, 2791, 2902, 3105
SduI GDGCHC 5 cut(s) 1961, 2484, 2686, 2755, 3001
SfaNI GCATC 8 cut(s) 216, 1157, 2266, 2371, 2704, 2712, 3069, 3126
SfcI CTRYAG 2 cut(s) 2334, 2745
Sfr274I CTCGAG 2 cut(s) 3005, 3024
SinI GGWCC 3 cut(s) 587, 1007, 3034
SlaI CTCGAG 2 cut(s) 3005, 3024
SmiMI CAYNNNNRTG 2 cut(s) 1561, 2096
SmlI CTYRAG 8 cut(s) 445, 555, 614, 832, 2729, 3005, 3024, 3143
SmoI CTYRAG 8 cut(s) 445, 555, 614, 832, 2729, 3005, 3024, 3143
SnaBI TACGTA 1 cut(s) 1424
SphI GCATGC 2 cut(s) 2001, 2863
SseBI AGGCCT 2 cut(s) 32, 1739
SsiI CCGC 6 cut(s) 572, 1282, 2049, 2572, 2831, 2995
SspMI CTAG 5 cut(s) 711, 957, 1182, 2273, 2889
SstI GAGCTC 1 cut(s) 2484
StuI AGGCCT 2 cut(s) 32, 1739
StyD4I CCNGG 9 cut(s) 392, 607, 779, 844, 1577, 1867, 2789, 2900, 3103
StyI CCWWGG 4 cut(s) 207, 1287, 1668, 2976
TaaI ACNGT 7 cut(s) 605, 989, 1220, 1805, 1949, 2338, 2918
TaiI ACGT 1 cut(s) 1426
TaqI TCGA 5 cut(s) 919, 2211, 2394, 3006, 3025
TatI WGTACW 3 cut(s) 989, 2080, 2266
TauI GCSGC 1 cut(s) 1284
TscAI CASTG 8 cut(s) 1092, 1167, 1372, 1968, 2157, 2760, 2921, 3081
TseFI GTSAC 5 cut(s) 952, 1297, 1306, 2426, 2567
Tsp45I GTSAC 5 cut(s) 952, 1297, 1306, 2426, 2567
TspGWI ACGGA 3 cut(s) 2032, 2358, 2528
TspRI CASTG 8 cut(s) 1092, 1167, 1372, 1968, 2157, 2760, 2921, 3081
VneI GTGCAC 2 cut(s) 2682, 2751
VpaK11BI GGWCC 3 cut(s) 587, 1007, 3034
VspI ATTAAT 1 cut(s) 1328
XapI RAATTY 4 cut(s) 50, 319, 1039, 1720
XceI RCATGY 3 cut(s) 860, 2001, 2863
XcmI CCANNNNNNNNNTGG 2 cut(s) 945, 2968
XhoI CTCGAG 2 cut(s) 3005, 3024
XmiI GTMKAC 3 cut(s) 1426, 2340, 2744
XmnI GAANNNNTTC 1 cut(s) 2534
XspI CTAG 5 cut(s) 711, 957, 1182, 2273, 2889
ZrmI AGTACT 1 cut(s) 2268
Zsp2I ATGCAT 5 cut(s) 474, 858, 1256, 2719, 2861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.