Rh7CG417400

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000439
Physical Location & Seq
Reverse (-)
53883911 .. 53894634
10724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG417400.1

Sequence Viewer

Length: 3231 bp
ATGGATTCTATCTGTATGAGAACAGACTTAAATGAAACTCTCAGCAGGTTTCTGCTCGTTTCTGTGTTAACCCAGAACGAAGCTCTGTTTCTTTGGGGACTGAAGGGAAAGGACAAACTGCAAATTGAGATCTGCAAAATTTTCAAATCAGTGATGTGGCCGAAAGGTAGCAAAATTGCAAAGGCCTGTCAGGCAATGAAAGAATTTGGCATTGCTGAAGTCCAAACAAAGGCTGCGCTGAAGCAACTTCTGGAAGTGTATGAAAATAACTGGGATTTCATTGAAGCTGATGATTACAAAGAACTCTTTAATTTTATTGTACCAGATAACAAGAAGCCAAATGAAGAGAGAGTGCAGCCCAAGGTAAAAGGCGCTTTGATGTGTGAATCAAAGAGAGTGAATTCTAAGAACAAACAAGCTCCATCATATGATACAACTGAAGTTATTGAGCGTCCAACCAAGAGATATTGCACCAGGCAACAGAAAAATCAGCCATTATCTCGTACCAAATACTCTGAATCAAGCTTGAGAAGAACTCCACCAGAAAGTATGCATATTAAGTTTGATGAAGAATCTGAGGAATCTGAGGAGTGGCAGCCATTAGTGAGAAAACCTCGACAAAGGCACACAAATCTGCAAGAAGTTTGGGTTGCGGATAATAAGGTTGGTCCTGTGCCTGATGACTGTCCAGAACTTGATATGAGTCCGAATCTTATATGTGAAGGTAACTTCTCAGATTCTGATGGTTGTGATGTTGGTGAAGATGTGATGAAGTACCTGCAACTGAAATCTAAGAACAAACAACCTCCATCATATGATACACCTGAAGTCATTGAGTGGCAAACCAAGAGATTTCGCACCAGGCAACAGAAAAATCAGACATCATCTCTTACCAAATACTCTGAATCAAGCTTGAGAAGAACTCCAGGAAAAATGCATGTGAAGTTTGATGAAGAATCTGAGGAATCTGAGGACTCGCAGCCATTAGTGAGAAAACCTCGACAAAGACACATAAATCCACAAGAAGTTTGGGTCACTAGGAATAACATTGATCATGTGCTTGATGACTGTCCAGAACTTGAAATAGGTCCCAGTCTTGTATGTGAATGTAACTTCACAAATTCTGATGGTTGTGATGTTAGTGAAGATGTGGTGAAGTACCTGCCAGTGGAATTATTGAATGAGAGCAATAGTGTGAGTGTCTCAGATGGGTCTCAGACTGATGTTGCATCTTCTTTCCCAGTGAAAAATCCTTTGATTTCTAGCTCTTCGCAAAAGTCTGGTTTTGATCTTCCTAACGGTGAAGTATCCCAAGAAATGATGGAAGAGAAATGCATAAAATCATATAGGACTGGAGAATGCCGCTCCATGGCGATAGTGACTAATGTCACTAAGAATAAGCCAGAATTAATAACTTCTAATGAACAAGATCAAGGCAGTAAGTGCAGTGGTCTGGGTTCTTTTAACGAGCTATTTGTTGATCAGAATCTTATCAAGCCTATACGTATACCTAATTATAGAGCGTTGGGTAGTTTTGAAGGTCTTCGCAGCTTAATTGGTATTAAAGTTAAGGATATGGAGAACATCTGTGGGGAAAGTGCAAAGAGATCAAGGGTTTCCAAAGGTCAAAAAACATCACAATTATGCAAGGTGGAAGCTGGGCATAACTACCATTCTTCACCTAGAGTTACAGAGTCTGCATTTAACATTGATGACATAACGAGAGGTGAGGAAAGATTTAAGATTTCCTTGGAAAATGGAAGAAATGCTGAGTTGCCAACCTTTTCTTACATCGCGCAGAATTTAATTTATAATAAGGCCTCTGTGAGATTTGCACTTGCTAATATATCCGATGAGGATTGCTGTTCAAAATGTTATGGGGACTGTCTTACATCATCAATTCCTTGTCTTTGTGTGATTGCCAATGGGGGTGAATGTGCTTACATGCCAGGAGGATTGGTCAAGGAGAAGTTTCTGGAAGAATGTATATCTATGAAGTGTGAGCCTGAAAAGCACCCATACTTCTACTGTAAAAAGTGCCCACTAGTAAGGTTAGAGAATGCGAAGAGTTCTGTGGCATGCAAGGGACATTTGTTACGGAGGTTTATAAAGGAATGCTGGTATAAATGCGGTTGCAACAGGAGCTGTGGAAACCGGATTGTACAGAAAGGCATTGCTGTGAAATTGCAGGTATTTTTGACACCCGAAGGGAAAGGGTGGGGTGTAAGAACACTGGAGGCATTGCCAAGAGGGGCTTTTGTTTGTGAATATGTTGGAGAGATAGTAACCATCGACGAACTACATGAGCGAAGTGTGCTGAGTATTGGTAAAGAGCACACCTACCCAGTACTACTAGATGCAGACTGGGGTTCACAGGATGTGTTGAAAGATGAAAAGGCTCTTTGTTTGGACACTACAGTCTACGGAAATGTTGCAAGATTCATTAACCACAGATGTTCTGATGCTACATTGGTCGAGATCCCAGTTGAAGTGGAGACCCCAGATCGTCACTATTATCATGTTGCCCTTTTCACAACAAGGGATGTTGGTGCTATGGAGGAGCTCACTTGGGACTATGGCATTTCCTTTCATGACCGTAATTATCCTGTGAAGCATTTCCAATGTCTCTGTGGAAGTCCATTATGTCGTGACCGCAAAGATATAAACCGCAAAATTACATATGTCCGACGACGTCGTAAGGAGGGGAAGGGTAACAAAAAGGATGGTGTGCTTGATCACTTGGCAAAGGATCTTGCCACGGGTACACCGAGCGAGGAAATACTAGTAGAACCTGATGCATTGATGCAGCTTGAGGTTGTCCCGTCTACAGGCCCATTGAGGGAGGAGATACAAGTAGCACCCCATGAATCCAGGCAGCTCGAGATTGTCCCATCTACGGGTGCGCCGAAAGCGGAGATACAAGTCGCTCCAGATCCATGCATGCAGCTTCAGGTTAACCCTTCTACTCCTAGAATTGAACCCAGGAAGGCAATGCACTGTTTAAATTGGGAGTCAGTTAGGGATAGCTGCTCCTCTTCTTCCACTATGTATCTGGCCAAGGAGGTAGCAGACTTGCGGGCTCAGCTTGAGGCTGAGAAGGCAGCTCGAGAGAAGGACCAGATATACTTTGAGGCTCATCGTGCTCAATTTCAGGCAGTGATGCAGCAACTATCTACCCTTCTCCCTGGGTTTCAGGTACCACAAGCTTCTGTTCAGATGCAGCTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SET WIYLD

Protein Analysis

1076

Amino Acids

121.88

Weight (kDa)

6.05

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WIYLD PF10440 57 - 106 2.1e-15 Ubiquitin-binding WIYLD domain
SET PF00856 739 - 860 6.6e-18 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1812, 2108
AasI GACNNNNNNGTC 1 cut(s) 2417
AatII GACGTC 1 cut(s) 2695
Acc36I ACCTGC 4 cut(s) 36, 786, 1170, 2179
Acc65I GGTACC 1 cut(s) 3196
AccB1I GGYRCC 1 cut(s) 3196
AccBSI CCGCTC 1 cut(s) 1365
AccI GTMKAC 3 cut(s) 1507, 2421, 2825
AccII CGCG 1 cut(s) 1796
AciI CCGC 7 cut(s) 653, 1363, 2130, 2653, 2668, 2912, 3076
AclWI GGATC 3 cut(s) 2473, 2757, 2927
AcoI YGGCCR 2 cut(s) 158, 3054
AcsI RAATTY 5 cut(s) 138, 203, 400, 1120, 1801
AcuI CTGAAG 6 cut(s) 122, 237, 260, 459, 846, 2933
AcyI GRCGYC 1 cut(s) 2692
AfaI GTAC 8 cut(s) 321, 505, 776, 1160, 2163, 2349, 2764, 3198
AfiI CCNNNNNNNGG 7 cut(s) 229, 1168, 1369, 2828, 2839, 2896, 2897
AgsI TTSAA 9 cut(s) 145, 284, 1082, 1180, 1538, 1869, 2386, 2489, 2978
AhlI ACTAGT 2 cut(s) 2044, 2782
AjnI CCWGG 7 cut(s) 473, 860, 925, 1948, 2870, 2981, 3184
Alw21I GWGCWC 3 cut(s) 2337, 2565, 3145
Alw26I GTCTC 4 cut(s) 1207, 1218, 2489, 2630
AlwI GGATC 3 cut(s) 2473, 2757, 2927
AlwNI CAGNNNCTG 3 cut(s) 740, 1697, 2145
Ama87I CYCGRG 3 cut(s) 2879, 3105, 3224
AoxI GGCC 5 cut(s) 158, 183, 1818, 2830, 3054
ApoI RAATTY 5 cut(s) 138, 203, 400, 1120, 1801
AseI ATTAAT 1 cut(s) 1409
Asp700I GAANNNNTTC 2 cut(s) 1542, 2615
Asp718I GGTACC 1 cut(s) 3196
AspLEI GCGC 4 cut(s) 238, 374, 1798, 2905
AspS9I GGNCC 4 cut(s) 668, 1088, 2831, 3115
AsuHPI GGTGA 6 cut(s) 770, 1165, 1313, 1671, 1739, 1943
AvaI CYCGRG 3 cut(s) 2879, 3105, 3224
AvaII GGWCC 3 cut(s) 668, 1088, 3115
BaeGI GKGCMC 1 cut(s) 2042
BalI TGGCCA 1 cut(s) 3056
BanI GGYRCC 1 cut(s) 3196
BanII GRGCYC 2 cut(s) 2565, 3082
BbsI GAAGAC 1 cut(s) 1535
Bbv12I GWGCWC 3 cut(s) 2337, 2565, 3145
BccI CCATC 9 cut(s) 430, 737, 817, 1121, 1202, 1315, 2297, 2717, 2899
BciT130I CCWGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
BciVI GTATCC 1 cut(s) 1318
BclI TGATCA 3 cut(s) 1051, 1480, 2734
BcoDI GTCTC 4 cut(s) 1207, 1218, 2489, 2630
BcuI ACTAGT 2 cut(s) 2044, 2782
BfaI CTAG 7 cut(s) 1038, 1263, 1683, 2045, 2354, 2783, 2970
BfmI CTRYAG 2 cut(s) 2415, 2826
BfoI RGCGCY 1 cut(s) 375
BfuAI ACCTGC 4 cut(s) 36, 786, 1170, 2179
BfuI GTATCC 1 cut(s) 1318
BglI GCCNNNNNGGC 1 cut(s) 191
BglII AGATCT 1 cut(s) 129
BlpI GCTNAGC 1 cut(s) 3081
BmcAI AGTACT 1 cut(s) 2349
Bme1390I CCNGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
Bme18I GGWCC 3 cut(s) 668, 1088, 3115
BmeT110I CYCGRG 3 cut(s) 2879, 3105, 3224
BmgT120I GGNCC 4 cut(s) 668, 1088, 2831, 3115
BmiI GGNNCC 2 cut(s) 1090, 3198
BmrFI CCNGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
BmrI ACTGGG 6 cut(s) 280, 1086, 1235, 2339, 2374, 2477
BmsI GCATC 7 cut(s) 1238, 2347, 2452, 2785, 2793, 3150, 3207
BmuI ACTGGG 6 cut(s) 280, 1086, 1235, 2339, 2374, 2477
BoxI GACNNNNGTC 1 cut(s) 1385
BpiI GAAGAC 1 cut(s) 1535
BplI GAGNNNNNCTC 8 cut(s) 520, 552, 598, 630, 907, 939, 982, 1014
BpmI CTGGAG 4 cut(s) 909, 1374, 2255, 2913
Bpu1102I GCTNAGC 1 cut(s) 3081
BpuEI CTTGAG 4 cut(s) 547, 934, 2831, 3107
BsaAI YACGTR 1 cut(s) 1505
BsaBI GATNNNNATC 1 cut(s) 1485
BsaHI GRCGYC 1 cut(s) 2692
BsaI GGTCTC 2 cut(s) 1218, 2489
BsaJI CCNNGG 8 cut(s) 360, 1368, 1749, 2757, 2981, 3057, 3184, 3185
BsaWI WCCGGW 1 cut(s) 2154
BsaXI ACNNNNNCTCC 4 cut(s) 1944, 1974, 2268, 2298
Bsc4I CCNNNNNNNGG 7 cut(s) 229, 1168, 1369, 2828, 2839, 2896, 2897
Bse1I ACTGG 9 cut(s) 275, 1092, 1166, 1241, 1357, 2238, 2345, 2369, 2483
Bse3DI GCAATG 5 cut(s) 201, 210, 2172, 2240, 2997
Bse8I GATNNNNATC 1 cut(s) 1485
BseBI CCWGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
BseDI CCNNGG 8 cut(s) 360, 1368, 1749, 2757, 2981, 3057, 3184, 3185
BseGI GGATG 3 cut(s) 2383, 2548, 2728
BseJI GATNNNNATC 1 cut(s) 1485
BseLI CCNNNNNNNGG 7 cut(s) 229, 1168, 1369, 2828, 2839, 2896, 2897
BseMI GCAATG 5 cut(s) 201, 210, 2172, 2240, 2997
BseNI ACTGG 9 cut(s) 275, 1092, 1166, 1241, 1357, 2238, 2345, 2369, 2483
BseRI GAGGAG 4 cut(s) 602, 2573, 2858, 3022
BseSI GKGCMC 1 cut(s) 2042
BseYI CCCAGC 1 cut(s) 1658
BsgI GTGCAG 2 cut(s) 374, 1465
Bsh1236I CGCG 1 cut(s) 1796
BshFI GGCC 5 cut(s) 160, 185, 1820, 2832, 3056
BshNI GGYRCC 1 cut(s) 3196
BsiHKAI GWGCWC 3 cut(s) 2337, 2565, 3145
BsiHKCI CYCGRG 3 cut(s) 2879, 3105, 3224
BsiSI CCGG 1 cut(s) 2155
BslFI GGGAC 7 cut(s) 111, 1074, 1895, 2100, 2585, 2804, 2873
BslI CCNNNNNNNGG 7 cut(s) 229, 1168, 1369, 2828, 2839, 2896, 2897
BsmAI GTCTC 4 cut(s) 1207, 1218, 2489, 2630
BsmFI GGGAC 7 cut(s) 111, 1074, 1895, 2100, 2585, 2804, 2873
BsmI GAATGC 3 cut(s) 1364, 2065, 2120
BsnI GGCC 5 cut(s) 160, 185, 1820, 2832, 3056
Bso31I GGTCTC 2 cut(s) 1218, 2489
BsoBI CYCGRG 3 cut(s) 2879, 3105, 3224
Bsp1286I GDGCHC 5 cut(s) 2042, 2337, 2565, 3082, 3145
Bsp1407I TGTACA 1 cut(s) 2161
Bsp1720I GCTNAGC 1 cut(s) 3081
Bsp19I CCATGG 1 cut(s) 1368
BspACI CCGC 7 cut(s) 653, 1363, 2130, 2653, 2668, 2912, 3076
BspANI GGCC 5 cut(s) 160, 185, 1820, 2832, 3056
BspFNI CGCG 1 cut(s) 1796
BspHI TCATGA 1 cut(s) 2590
BspLI GGNNCC 2 cut(s) 1090, 3198
BspMI ACCTGC 4 cut(s) 36, 786, 1170, 2179
BspPI GGATC 3 cut(s) 2473, 2757, 2927
BspQI GCTCTTC 1 cut(s) 1273
BspT107I GGYRCC 1 cut(s) 3196
BspTNI GGTCTC 2 cut(s) 1218, 2489
BsrBI CCGCTC 1 cut(s) 1365
BsrDI GCAATG 5 cut(s) 201, 210, 2172, 2240, 2997
BsrGI TGTACA 1 cut(s) 2161
BsrI ACTGG 9 cut(s) 275, 1092, 1166, 1241, 1357, 2238, 2345, 2369, 2483
BssECI CCNNGG 8 cut(s) 360, 1368, 1749, 2757, 2981, 3057, 3184, 3185
BssNAI GTATAC 1 cut(s) 1508
BssNI GRCGYC 1 cut(s) 2692
BssT1I CCWWGG 4 cut(s) 360, 1368, 1749, 3057
Bst1107I GTATAC 1 cut(s) 1508
Bst2UI CCWGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
Bst4CI ACNGT 8 cut(s) 686, 1070, 1301, 1886, 2030, 2419, 2597, 2999
Bst6I CTCTTC 5 cut(s) 339, 1273, 1320, 2060, 3040
BstACI GRCGYC 1 cut(s) 2692
BstAPI GCANNNNNTGC 1 cut(s) 1443
BstAUI TGTACA 1 cut(s) 2161
BstBAI YACGTR 1 cut(s) 1505
BstC8I GCNNGC 3 cut(s) 2080, 2942, 3078
BstDSI CCRYGG 2 cut(s) 1368, 2757
BstF5I GGATG 3 cut(s) 2383, 2548, 2728
BstFNI CGCG 1 cut(s) 1796
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 4 cut(s) 238, 374, 1798, 2905
BstMAI GTCTC 4 cut(s) 1207, 1218, 2489, 2630
BstMWI GCNNNNNNNGC 9 cut(s) 191, 1443, 2011, 2142, 2314, 2909, 3082, 3098, 3140
BstNI CCWGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
BstNSI RCATGY 4 cut(s) 941, 1948, 2082, 2944
BstPAI GACNNNNGTC 1 cut(s) 1385
BstSCI CCNGG 7 cut(s) 473, 860, 925, 1948, 2870, 2981, 3184
BstSFI CTRYAG 2 cut(s) 2415, 2826
BstSLI GKGCMC 1 cut(s) 2042
BstSNI TACGTA 1 cut(s) 1505
BstUI CGCG 1 cut(s) 1796
BstV2I GAAGAC 1 cut(s) 1535
BstX2I RGATCY 4 cut(s) 129, 2478, 2749, 2932
BstYI RGATCY 4 cut(s) 129, 2478, 2749, 2932
BstZ17I GTATAC 1 cut(s) 1508
BsuI GTATCC 1 cut(s) 1318
BsuRI GGCC 5 cut(s) 160, 185, 1820, 2832, 3056
BtgI CCRYGG 2 cut(s) 1368, 2757
BtgZI GCGATG 1 cut(s) 1777
BtsCI GGATG 3 cut(s) 2383, 2548, 2728
BtsI GCAGTG 2 cut(s) 1453, 3162
BtsIMutI CAGTG 7 cut(s) 156, 1173, 1248, 1453, 2231, 2995, 3162
BveI ACCTGC 4 cut(s) 36, 786, 1170, 2179
Cac8I GCNNGC 3 cut(s) 2080, 2942, 3078
CaiI CAGNNNCTG 3 cut(s) 740, 1697, 2145
CciI TCATGA 1 cut(s) 2590
CfoI GCGC 4 cut(s) 238, 374, 1798, 2905
Cfr13I GGNCC 4 cut(s) 668, 1088, 2831, 3115
CseI GACGC 1 cut(s) 440
Csp6I GTAC 8 cut(s) 320, 504, 775, 1159, 2162, 2348, 2763, 3197
CviQI GTAC 8 cut(s) 320, 504, 775, 1159, 2162, 2348, 2763, 3197
DraI TTTAAA 1 cut(s) 3003
DrdI GACNNNNNNGTC 1 cut(s) 2417
DseDI GACNNNNNNGTC 1 cut(s) 2417
EaeI YGGCCR 2 cut(s) 158, 3054
Eam1104I CTCTTC 5 cut(s) 339, 1273, 1320, 2060, 3040
EarI CTCTTC 5 cut(s) 339, 1273, 1320, 2060, 3040
Ecl136II GAGCTC 1 cut(s) 2563
Eco105I TACGTA 1 cut(s) 1505
Eco130I CCWWGG 4 cut(s) 360, 1368, 1749, 3057
Eco147I AGGCCT 2 cut(s) 185, 1820
Eco24I GRGCYC 2 cut(s) 2565, 3082
Eco31I GGTCTC 2 cut(s) 1218, 2489
Eco47I GGWCC 3 cut(s) 668, 1088, 3115
Eco53kI GAGCTC 1 cut(s) 2563
Eco57I CTGAAG 6 cut(s) 122, 237, 260, 459, 846, 2933
Eco88I CYCGRG 3 cut(s) 2879, 3105, 3224
EcoICRI GAGCTC 1 cut(s) 2563
EcoO109I RGGNCCY 1 cut(s) 1088
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 7 cut(s) 473, 860, 925, 1948, 2870, 2981, 3184
EcoT14I CCWWGG 4 cut(s) 360, 1368, 1749, 3057
EcoT22I ATGCAT 5 cut(s) 555, 939, 1337, 2800, 2942
EcoT38I GRGCYC 2 cut(s) 2565, 3082
ErhI CCWWGG 4 cut(s) 360, 1368, 1749, 3057
FalI AAGNNNNNCTT 4 cut(s) 1733, 1765, 2239, 2271
FaqI GGGAC 7 cut(s) 111, 1074, 1895, 2100, 2585, 2804, 2873
FauI CCCGC 1 cut(s) 3069
FauNDI CATATG 3 cut(s) 427, 814, 2680
FbaI TGATCA 3 cut(s) 1051, 1480, 2734
FblI GTMKAC 3 cut(s) 1507, 2421, 2825
FokI GGATG 3 cut(s) 2390, 2555, 2735
FriOI GRGCYC 2 cut(s) 2565, 3082
FspBI CTAG 7 cut(s) 1038, 1263, 1683, 2045, 2354, 2783, 2970
GlaI GCGC 4 cut(s) 237, 373, 1797, 2904
GsaI CCCAGC 1 cut(s) 1662
GsuI CTGGAG 4 cut(s) 909, 1374, 2255, 2913
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 5 cut(s) 160, 185, 1820, 2832, 3056
HapII CCGG 1 cut(s) 2155
HgaI GACGC 1 cut(s) 440
HhaI GCGC 4 cut(s) 238, 374, 1798, 2905
Hin1I GRCGYC 1 cut(s) 2692
Hin6I GCGC 4 cut(s) 236, 372, 1796, 2903
HinP1I GCGC 4 cut(s) 236, 372, 1796, 2903
HincII GTYRAC 2 cut(s) 69, 2956
HindII GTYRAC 2 cut(s) 69, 2956
HindIII AAGCTT 3 cut(s) 523, 910, 3204
HpaI GTTAAC 2 cut(s) 69, 2956
HpaII CCGG 1 cut(s) 2155
HphI GGTGA 6 cut(s) 770, 1165, 1313, 1671, 1739, 1943
Hpy166II GTNNAC 7 cut(s) 69, 1508, 2372, 2422, 2765, 2826, 2956
Hpy8I GTNNAC 7 cut(s) 69, 1508, 2372, 2422, 2765, 2826, 2956
Hpy99I CGWCG 4 cut(s) 2297, 2691, 2694, 2697
HpyCH4III ACNGT 8 cut(s) 686, 1070, 1301, 1886, 2030, 2419, 2597, 2999
HpyCH4IV ACGT 2 cut(s) 1504, 2692
HpyF10VI GCNNNNNNNGC 9 cut(s) 191, 1443, 2011, 2142, 2314, 2909, 3082, 3098, 3140
HpySE526I ACGT 2 cut(s) 1504, 2692
Hsp92I GRCGYC 1 cut(s) 2692
HspAI GCGC 4 cut(s) 236, 372, 1796, 2903
KpnI GGTACC 1 cut(s) 3200
Ksp22I TGATCA 3 cut(s) 1051, 1480, 2734
KspAI GTTAAC 2 cut(s) 69, 2956
LguI GCTCTTC 1 cut(s) 1273
LmnI GCTCC 6 cut(s) 424, 1370, 2142, 2560, 2932, 3035
LweI GCATC 7 cut(s) 1238, 2347, 2452, 2785, 2793, 3150, 3207
MaeI CTAG 7 cut(s) 1038, 1263, 1683, 2045, 2354, 2783, 2970
MaeII ACGT 2 cut(s) 1504, 2692
MbiI CCGCTC 1 cut(s) 1365
MflI RGATCY 4 cut(s) 129, 2478, 2749, 2932
MhlI GDGCHC 5 cut(s) 2042, 2337, 2565, 3082, 3145
MlsI TGGCCA 1 cut(s) 3056
MluNI TGGCCA 1 cut(s) 3056
MlyI GAGTC 4 cut(s) 712, 968, 1703, 3020
MmeI TCCRAC 3 cut(s) 479, 2254, 2710
Mox20I TGGCCA 1 cut(s) 3056
Mph1103I ATGCAT 5 cut(s) 555, 939, 1337, 2800, 2942
MroXI GAANNNNTTC 2 cut(s) 1542, 2615
MscI TGGCCA 1 cut(s) 3056
MslI CAYNNNNRTG 2 cut(s) 1642, 2177
Msp20I TGGCCA 1 cut(s) 3056
MspI CCGG 1 cut(s) 2155
MspR9I CCNGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
Mva1269I GAATGC 3 cut(s) 1364, 2065, 2120
MvaI CCWGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
MvnI CGCG 1 cut(s) 1796
MwoI GCNNNNNNNGC 9 cut(s) 191, 1443, 2011, 2142, 2314, 2909, 3082, 3098, 3140
NcoI CCATGG 1 cut(s) 1368
NdeI CATATG 3 cut(s) 427, 814, 2680
NlaIV GGNNCC 2 cut(s) 1090, 3198
NmuCI GTSAC 5 cut(s) 1033, 1378, 1387, 2507, 2648
NsiI ATGCAT 5 cut(s) 555, 939, 1337, 2800, 2942
NspI RCATGY 4 cut(s) 941, 1948, 2082, 2944
PaeI GCATGC 2 cut(s) 2082, 2944
PaeR7I CTCGAG 3 cut(s) 2879, 3105, 3224
PagI TCATGA 1 cut(s) 2590
PasI CCCWGGG 1 cut(s) 3185
PceI AGGCCT 2 cut(s) 185, 1820
PciSI GCTCTTC 1 cut(s) 1273
PcsI WCGNNNNNNNCGW 2 cut(s) 2765, 2903
PctI GAATGC 3 cut(s) 1364, 2065, 2120
PdmI GAANNNNTTC 2 cut(s) 1542, 2615
PflFI GACNNNGTC 1 cut(s) 2691
PfoI TCCNGGA 1 cut(s) 925
PleI GAGTC 4 cut(s) 711, 968, 1702, 3019
PpsI GAGTC 4 cut(s) 711, 968, 1702, 3019
Ppu21I YACGTR 1 cut(s) 1505
PpuMI RGGWCCY 1 cut(s) 1088
PshAI GACNNNNGTC 1 cut(s) 1385
PshBI ATTAAT 1 cut(s) 1409
PsiI TTATAA 2 cut(s) 1812, 2108
Psp124BI GAGCTC 1 cut(s) 2565
Psp5II RGGWCCY 1 cut(s) 1088
Psp6I CCWGG 7 cut(s) 473, 860, 925, 1948, 2870, 2981, 3184
PspFI CCCAGC 1 cut(s) 1658
PspGI CCWGG 7 cut(s) 473, 860, 925, 1948, 2870, 2981, 3184
PspN4I GGNNCC 2 cut(s) 1090, 3198
PspPI GGNCC 4 cut(s) 668, 1088, 2831, 3115
PspPPI RGGWCCY 1 cut(s) 1088
PspXI VCTCGAGB 1 cut(s) 3224
PstNI CAGNNNCTG 3 cut(s) 740, 1697, 2145
PsuI RGATCY 4 cut(s) 129, 2478, 2749, 2932
PsyI GACNNNGTC 1 cut(s) 2691
RsaI GTAC 8 cut(s) 321, 505, 776, 1160, 2163, 2349, 2764, 3198
RsaNI GTAC 8 cut(s) 320, 504, 775, 1159, 2162, 2348, 2763, 3197
RseI CAYNNNNRTG 2 cut(s) 1642, 2177
SacI GAGCTC 1 cut(s) 2565
SapI GCTCTTC 1 cut(s) 1273
Sau96I GGNCC 4 cut(s) 668, 1088, 2831, 3115
ScaI AGTACT 1 cut(s) 2349
SchI GAGTC 4 cut(s) 712, 968, 1703, 3020
ScrFI CCNGG 7 cut(s) 475, 862, 927, 1950, 2872, 2983, 3186
SduI GDGCHC 5 cut(s) 2042, 2337, 2565, 3082, 3145
SfaNI GCATC 7 cut(s) 1238, 2347, 2452, 2785, 2793, 3150, 3207
SfcI CTRYAG 2 cut(s) 2415, 2826
Sfr274I CTCGAG 3 cut(s) 2879, 3105, 3224
SinI GGWCC 3 cut(s) 668, 1088, 3115
SlaI CTCGAG 3 cut(s) 2879, 3105, 3224
SmiMI CAYNNNNRTG 2 cut(s) 1642, 2177
SmlI CTYRAG 7 cut(s) 526, 913, 2810, 2879, 3086, 3105, 3224
SmoI CTYRAG 7 cut(s) 526, 913, 2810, 2879, 3086, 3105, 3224
SnaBI TACGTA 1 cut(s) 1505
SpeI ACTAGT 2 cut(s) 2044, 2782
SphI GCATGC 2 cut(s) 2082, 2944
SseBI AGGCCT 2 cut(s) 185, 1820
SsiI CCGC 7 cut(s) 653, 1363, 2130, 2653, 2668, 2912, 3076
SspMI CTAG 7 cut(s) 1038, 1263, 1683, 2045, 2354, 2783, 2970
SstI GAGCTC 1 cut(s) 2565
StuI AGGCCT 2 cut(s) 185, 1820
StyD4I CCNGG 7 cut(s) 473, 860, 925, 1948, 2870, 2981, 3184
StyI CCWWGG 4 cut(s) 360, 1368, 1749, 3057
TaaI ACNGT 8 cut(s) 686, 1070, 1301, 1886, 2030, 2419, 2597, 2999
TaiI ACGT 2 cut(s) 1507, 2695
TaqI TCGA 7 cut(s) 616, 1000, 2292, 2475, 2880, 3106, 3225
TatI WGTACW 2 cut(s) 2161, 2347
TauI GCSGC 1 cut(s) 1365
TscAI CASTG 7 cut(s) 156, 1173, 1248, 1453, 2238, 3002, 3162
TseFI GTSAC 5 cut(s) 1033, 1378, 1387, 2507, 2648
Tsp45I GTSAC 5 cut(s) 1033, 1378, 1387, 2507, 2648
TspGWI ACGGA 2 cut(s) 2113, 2439
TspRI CASTG 7 cut(s) 156, 1173, 1248, 1453, 2238, 3002, 3162
Tth111I GACNNNGTC 1 cut(s) 2691
VpaK11BI GGWCC 3 cut(s) 668, 1088, 3115
VspI ATTAAT 1 cut(s) 1409
XapI RAATTY 5 cut(s) 138, 203, 400, 1120, 1801
XceI RCATGY 4 cut(s) 941, 1948, 2082, 2944
XcmI CCANNNNNNNNNTGG 3 cut(s) 1026, 2627, 3049
XhoI CTCGAG 3 cut(s) 2879, 3105, 3224
XmiI GTMKAC 3 cut(s) 1507, 2421, 2825
XmnI GAANNNNTTC 2 cut(s) 1542, 2615
XspI CTAG 7 cut(s) 1038, 1263, 1683, 2045, 2354, 2783, 2970
ZraI GACGTC 1 cut(s) 2693
ZrmI AGTACT 1 cut(s) 2349
Zsp2I ATGCAT 5 cut(s) 555, 939, 1337, 2800, 2942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.