Rmu_sc0024829.1_g000001

Histone-lysine n-methyltransferase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024829.1
Physical Location & Seq
Forward (+)
162 .. 829
668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024829.1_g000001.1.cds

Sequence Viewer

Length: 668 bp
atggcacatcagaatgatggtggtctgttttatgattctgaagaatctgaagaaactccactaatatctagaagaaatcaggggagacaccagaaaaagaacgttttggtttctgggaacaaattggtttctggcattccaccaccagccaaaagtcccattgtgatatgtctagatagttcttcagatagtgatgtttgtaatgttgatgaagaaagattagaggcactggatgaggaaccattgactgtgaacaacatagcttgtgtttcagatatgtcacagatggatgatgatgaagacaggttggagttgctgaaagtagaaccattgattgtggacagcagaggttgtgttttagattcgtcacaggttgatgttgcatcattgctttcaaagggagaagtgaatatttctctgacttgtaactcttttccacagtctgatattcattttccatgtatggaagtggtggaagagagaggcattaaatcgtattgcaatcaagaatgctctttggctataggaactgattcaattactgatgaaaatgcaaggttcagagaggttccccagctacaaaactcgaagtcacaagatgttcttgccataaaagatgattatcaaggaagtaattgcagtgctctaggatttcctactgaagtatt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

222

Amino Acids

24.36

Weight (kDa)

4.27

Isoelectric Point (pI)

60.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000439)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis pycom02g22720 pycom04g20520
rosa_chinensis RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 102
AcuI CTGAAG 3 cut(s) 60, 69, 168
AgsI TTSAA 2 cut(s) 396, 537
AluBI AGCT 2 cut(s) 263, 577
AluI AGCT 2 cut(s) 263, 577
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 646
BccI CCATC 2 cut(s) 11, 280
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 3 cut(s) 69, 173, 647
BfmI CTRYAG 1 cut(s) 522
BmiI GGNNCC 2 cut(s) 240, 570
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 306
BsaBI GATNNNNATC 1 cut(s) 621
Bse1I ACTGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 621
BseGI GGATG 2 cut(s) 238, 295
BseJI GATNNNNATC 1 cut(s) 621
BseMI GCAATG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 234
BseYI CCCAGC 1 cut(s) 573
BsiHKAI GWGCWC 1 cut(s) 646
BslFI GGGAC 1 cut(s) 141
BsmAI GTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 2 cut(s) 135, 515
Bsp1286I GDGCHC 1 cut(s) 646
BspLI GGNNCC 2 cut(s) 240, 570
BsrDI GCAATG 1 cut(s) 386
BsrI ACTGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 250, 441
Bst6I CTCTTC 1 cut(s) 471
BstF5I GGATG 2 cut(s) 238, 295
BstMAI GTCTC 1 cut(s) 79
BstSFI CTRYAG 1 cut(s) 522
BstV2I GAAGAC 1 cut(s) 306
BtsCI GGATG 2 cut(s) 238, 295
BtsI GCAGTG 1 cut(s) 646
BtsIMutI CAGTG 2 cut(s) 227, 646
CviAII CATG 1 cut(s) 459
CviJI RGCY 4 cut(s) 149, 263, 521, 577
CviKI_1 RGCY 4 cut(s) 149, 263, 521, 577
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco57I CTGAAG 3 cut(s) 60, 69, 168
FaeI CATG 1 cut(s) 462
FaiI YATR 8 cut(s) 33, 169, 260, 278, 460, 464, 524, 611
FalI AAGNNNNNCTT 2 cut(s) 588, 620
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 458
FokI GGATG 2 cut(s) 245, 302
FspBI CTAG 3 cut(s) 69, 173, 647
GsaI CCCAGC 1 cut(s) 577
Hin1II CATG 1 cut(s) 462
HinfI GANTC 4 cut(s) 35, 44, 362, 533
Hpy166II GTNNAC 2 cut(s) 253, 340
Hpy188I TCNGA 8 cut(s) 12, 40, 49, 187, 274, 420, 445, 563
Hpy188III TCNNGA 3 cut(s) 69, 173, 506
Hpy8I GTNNAC 2 cut(s) 253, 340
HpyCH4III ACNGT 2 cut(s) 250, 441
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 4 cut(s) 383, 501, 554, 639
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 1 cut(s) 462
LpnPI CCDG 9 cut(s) 65, 99, 104, 117, 159, 215, 289, 356, 587
LweI GCATC 1 cut(s) 392
MaeI CTAG 3 cut(s) 69, 173, 647
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 4 cut(s) 279, 366, 425, 591
MboII GAAGA 7 cut(s) 53, 62, 84, 174, 224, 311, 488
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 3 cut(s) 122, 537, 634
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 5 cut(s) 217, 229, 341, 476, 559
MroXI GAANNNNTTC 1 cut(s) 532
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 12
Mva1269I GAATGC 2 cut(s) 135, 515
NlaIII CATG 1 cut(s) 462
NlaIV GGNNCC 2 cut(s) 240, 570
NmuCI GTSAC 3 cut(s) 279, 366, 591
PctI GAATGC 2 cut(s) 135, 515
PdmI GAANNNNTTC 1 cut(s) 532
PfeI GAWTC 4 cut(s) 35, 44, 362, 533
Psp1406I AACGTT 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 573
PspN4I GGNNCC 2 cut(s) 240, 570
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 489
SduI GDGCHC 1 cut(s) 646
SetI ASST 8 cut(s) 105, 265, 308, 352, 375, 560, 570, 579
SfaNI GCATC 1 cut(s) 392
SfcI CTRYAG 1 cut(s) 522
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 3 cut(s) 122, 537, 634
SspI AATATT 1 cut(s) 412
SspMI CTAG 3 cut(s) 69, 173, 647
TaaI ACNGT 2 cut(s) 250, 441
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 587
TasI AATT 3 cut(s) 122, 537, 634
TfiI GAWTC 4 cut(s) 35, 44, 362, 533
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 2 cut(s) 234, 646
TseFI GTSAC 3 cut(s) 279, 366, 591
Tsp45I GTSAC 3 cut(s) 279, 366, 591
TspDTI ATGAA 4 cut(s) 225, 312, 440, 561
TspRI CASTG 2 cut(s) 234, 646
XbaI TCTAGA 2 cut(s) 68, 172
XmnI GAANNNNTTC 1 cut(s) 532
XspI CTAG 3 cut(s) 69, 173, 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.