Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Forward (+)

64029775 .. 64033388

Gene Structure 3614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015284

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGGCTCCCAGTAAAACACAGATTGCTAATGCTTTTAAAGCATCAAAGGCCTTGGGAATTAGTACTGAAGAAATCAGACCTGTCCTCAGAGACTTGTACAAAGCTTTTCACAAGAATTGGGAGCATATTGAAGCAGACAACTACAGGGTTCTATTTGATAGATACTTCGAAATGAAGGAGAATAAGGGAGAAGCAGAAAAGAGAGATGAAAGACCAGGTAAAGCAGTGCATTTGGCTGAGGAAGACCAGGTTTCTAAAAGAACTGGATCAAGTTTTGAACTGCCCCTCAAACATTCCACTCACAGTGGAAATGTCCAATTCCCCCGTCATGTGTCCCCTGGAAATGGAAGAGTACACTCTGAAAGAGCATCAGCAGTCTCGCTTACTAGTCACACAAACTACTTCATGAAGTCAAAAAATGAGGGATCCACAAATGATGCTATAGTTTCTGCAGAACAAACCTCAATGAGACGTCCAGGACCAATGAACGGAGCTGCTAGAATACAACGACCTCAGACAGACTCAAATGGTGCATCCGTTTCTCGTGAGGACAAGAAGCCAATCATTTATAAATCAGACATAACCAAATCAACTGAAAAAGTGCCAATATCCGTAGTAGATGATGTTGGGATTGAGAGCTTGCCAAAGTTCAATTACATCCCACAAAACATCATATACCAAAATGCCAATCTGAATATTTCACTGTCTCGCATTGCGGATGAGGATTGCTGCCCAGATTGTTTTGGAGATTGTCTTTCAGCAGCATTTCCTTGCGCATGTGCTCTTGAAACTGGTGGGGAGTTTGTGTACACACCAGAAGGCCTACTGAAAGAAGATTTTCTAAGTCACCGTATGGCTCTGGTGAGGGAACCGGATAAGCAACCTCATGTTTATTGTCAAGACTGTCCTATTGAGAGGTCTAAGAATGAAGACATGCCTGACAAATGCAGAGGACACGTGGTCAGAAGGTTTATCAAAGAATGCTGGAGAAAATGTGGATGTGACATGCAGTGTGGAAATCGTGTTGTACAAAGGGGAATTTCGTGCAAGTTGCAGGTATTCTGGACTCCTCAGGGAAAAGGCTGGGGAGTTAGAACCTTAGAGGTCTTAGAGAAAGGATCATTTGTCTGTGAATATGTCGGGGAGATAATGACTAACACGGAGTTATATGAGCGGAATATGGAAACCACTGGTAGTGAGAGACATACATACCCCGTGACACTAGATGCAGATTGGGGGTCAGAACAAATTTTGAGGGATGAGGATGCCCTCTGTCTGGATGCGACGCTTCACGGCAATGTTGCAAGGTTCATCAATCATAGATGCTTTGATGCAAACTTGGTTGATATCCCAGTTCAAGTGGAAACTCCTGACCGCCATTATTATCATCTTGCCTTCTTTACTACAAGGAAAGTGAATGCCTTTGAAGAGTTGAATTGGGATTATGGGATTGATTTTGATGATGAAGATCATCCGATTGAGGCATTTCAGTGCAGTTGTGGAAGTCCATACTGCCGAAACATAAACGGAAAGGGAAAACAGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

516

Amino Acids

58.45

Weight (kDa)

5.98

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WIYLD	PF10440	5 - 61	7e-15	Ubiquitin-binding WIYLD domain
Pre-SET	PF05033	196 - 341	1.4e-12	Pre-SET motif
SET	PF00856	361 - 483	5.4e-17	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AatII	GACGTC	1 cut(s)	475
Acc16I	TGCGCA	1 cut(s)	775
Acc36I	ACCTGC	1 cut(s)	1045
AccBSI	CCGCTC	1 cut(s)	1174
AciI	CCGC	4 cut(s)	716, 1174, 1375, 1543
AclWI	GGATC	4 cut(s)	274, 420, 433, 1126
AcsI	RAATTY	2 cut(s)	1038, 1248
AcuI	CTGAAG	1 cut(s)	87
AcvI	CACGTG	1 cut(s)	958
AcyI	GRCGYC	1 cut(s)	472
AfaI	GTAC	5 cut(s)	64, 98, 354, 809, 1029
AfiI	CCNNNNNNNGG	3 cut(s)	344, 488, 1276
AflIII	ACRYGT	1 cut(s)	955
AgsI	TTSAA	7 cut(s)	131, 278, 652, 788, 1358, 1427, 1435
AhdI	GACNNNNNGTC	1 cut(s)	959
AhlI	ACTAGT	1 cut(s)	386
AjnI	CCWGG	4 cut(s)	214, 246, 337, 475
AluBI	AGCT	3 cut(s)	104, 494, 639
AluI	AGCT	3 cut(s)	104, 494, 639
Alw21I	GWGCWC	1 cut(s)	784
Alw26I	GTCTC	5 cut(s)	84, 382, 463, 711, 1195
AlwI	GGATC	4 cut(s)	274, 420, 433, 1126
AoxI	GGCC	2 cut(s)	48, 820
ApeKI	GCWGC	3 cut(s)	494, 729, 761
ApoI	RAATTY	2 cut(s)	1038, 1248
Asp700I	GAANNNNTTC	1 cut(s)	837
AspLEI	GCGC	1 cut(s)	776
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	839, 874
AsuII	TTCGAA	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	1071
BamHI	GGATCC	1 cut(s)	425
BauI	CACGAG	1 cut(s)	543
BbrPI	CACGTG	1 cut(s)	958
BbsI	GAAGAC	2 cut(s)	249, 936
Bbv12I	GWGCWC	1 cut(s)	784
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	3 cut(s)	481, 716, 773
BceAI	ACGGC	1 cut(s)	1309
BciT130I	CCWGG	4 cut(s)	216, 248, 339, 477
BcoDI	GTCTC	5 cut(s)	84, 382, 463, 711, 1195
BcuI	ACTAGT	1 cut(s)	386
BfaI	CTAG	3 cut(s)	387, 498, 1223
BfmI	CTRYAG	3 cut(s)	142, 441, 450
BfuAI	ACCTGC	1 cut(s)	1045
BisI	GCNGC	3 cut(s)	495, 730, 762
BlsI	GCNGC	3 cut(s)	496, 731, 763
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	4 cut(s)	216, 248, 339, 477
Bme18I	GGWCC	1 cut(s)	479
BmeRI	GACNNNNNGTC	1 cut(s)	959
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	3 cut(s)	6, 427, 870
BmrFI	CCNGG	4 cut(s)	216, 248, 339, 477
BmrI	ACTGGG	2 cut(s)	3, 1346
BmsI	GCATC	9 cut(s)	50, 377, 427, 542, 1216, 1255, 1270, 1313, 1321
BmuI	ACTGGG	2 cut(s)	3, 1346
BpiI	GAAGAC	2 cut(s)	249, 936
BpmI	CTGGAG	1 cut(s)	1006
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	958
BsaBI	GATNNNNATC	1 cut(s)	1467
BsaHI	GRCGYC	1 cut(s)	472
BsaJI	CCNNGG	2 cut(s)	51, 337
BsaWI	WCCGGW	1 cut(s)	871
BsaXI	ACNNNNNCTCC	4 cut(s)	791, 821, 979, 1009
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 488, 1276
Bse1I	ACTGG	5 cut(s)	9, 268, 796, 1195, 1352
Bse21I	CCTNAGG	1 cut(s)	1071
Bse3DI	GCAATG	2 cut(s)	711, 1303
Bse8I	GATNNNNATC	1 cut(s)	1467
BseBI	CCWGG	4 cut(s)	216, 248, 339, 477
BseDI	CCNNGG	2 cut(s)	51, 337
BseGI	GGATG	8 cut(s)	533, 657, 724, 1004, 1264, 1270, 1285, 1471
BseJI	GATNNNNATC	1 cut(s)	1467
BseLI	CCNNNNNNNGG	3 cut(s)	344, 488, 1276
BseMI	GCAATG	2 cut(s)	711, 1303
BseMII	CTCAG	4 cut(s)	100, 228, 527, 1085
BseNI	ACTGG	5 cut(s)	9, 268, 796, 1195, 1352
BseRI	GAGGAG	1 cut(s)	1059
BseXI	GCAGC	3 cut(s)	481, 716, 773
BseYI	CCCAGC	1 cut(s)	1083
BsgI	GTGCAG	1 cut(s)	1513
BshFI	GGCC	2 cut(s)	50, 822
BsiHKAI	GWGCWC	1 cut(s)	784
BsiSI	CCGG	1 cut(s)	872
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	3 cut(s)	344, 488, 1276
BsmAI	GTCTC	5 cut(s)	84, 382, 463, 711, 1195
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	2 cut(s)	986, 1423
BsnI	GGCC	2 cut(s)	50, 822
Bsp119I	TTCGAA	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	784
Bsp1407I	TGTACA	3 cut(s)	96, 807, 1027
Bsp143I	GATC	4 cut(s)	266, 425, 1118, 1468
BspACI	CCGC	4 cut(s)	716, 1174, 1375, 1543
BspANI	GGCC	2 cut(s)	50, 822
BspCNI	CTCAG	4 cut(s)	99, 229, 526, 1084
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	3 cut(s)	6, 427, 870
BspMAI	CTGCAG	1 cut(s)	454
BspMI	ACCTGC	1 cut(s)	1045
BspPI	GGATC	4 cut(s)	274, 420, 433, 1126
BspT104I	TTCGAA	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	1174
BsrDI	GCAATG	2 cut(s)	711, 1303
BsrGI	TGTACA	3 cut(s)	96, 807, 1027
BsrI	ACTGG	5 cut(s)	9, 268, 796, 1195, 1352
BssECI	CCNNGG	2 cut(s)	51, 337
BssMI	GATC	4 cut(s)	266, 425, 1118, 1468
BssNI	GRCGYC	1 cut(s)	472
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	4 cut(s)	216, 248, 339, 477
Bst4CI	ACNGT	4 cut(s)	305, 705, 851, 905
Bst6I	CTCTTC	2 cut(s)	343, 1422
BstACI	GRCGYC	1 cut(s)	472
BstAUI	TGTACA	3 cut(s)	96, 807, 1027
BstBAI	YACGTR	1 cut(s)	958
BstBI	TTCGAA	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	8 cut(s)	86, 237, 513, 842, 921, 1071, 1099, 1108
BstF5I	GGATG	8 cut(s)	533, 657, 724, 1004, 1264, 1270, 1285, 1471
BstHHI	GCGC	1 cut(s)	776
BstKTI	GATC	4 cut(s)	269, 428, 1121, 1471
BstMAI	GTCTC	5 cut(s)	84, 382, 463, 711, 1195
BstMBI	GATC	4 cut(s)	266, 425, 1118, 1468
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 47
BstNI	CCWGG	4 cut(s)	216, 248, 339, 477
BstNSI	RCATGY	3 cut(s)	780, 937, 1009
BstSCI	CCNGG	4 cut(s)	214, 246, 337, 475
BstSFI	CTRYAG	3 cut(s)	142, 441, 450
BstV1I	GCAGC	3 cut(s)	481, 716, 773
BstV2I	GAAGAC	2 cut(s)	249, 936
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
Bsu36I	CCTNAGG	1 cut(s)	1071
BsuRI	GGCC	2 cut(s)	50, 822
BtsCI	GGATG	8 cut(s)	533, 657, 724, 1004, 1264, 1270, 1285, 1471
BtsI	GCAGTG	2 cut(s)	231, 1016
BtsIMutI	CAGTG	6 cut(s)	231, 310, 701, 1016, 1188, 1496
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	1 cut(s)	641
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	1 cut(s)	776
Cfr13I	GGNCC	1 cut(s)	479
CseI	GACGC	1 cut(s)	1294
CsiI	ACCWGGT	2 cut(s)	214, 246
Csp6I	GTAC	5 cut(s)	63, 97, 353, 808, 1028
CviAII	CATG	6 cut(s)	329, 406, 777, 887, 934, 1006
CviQI	GTAC	5 cut(s)	63, 97, 353, 808, 1028
DdeI	CTNAG	8 cut(s)	86, 237, 513, 842, 921, 1071, 1099, 1108
DpnI	GATC	4 cut(s)	268, 427, 1120, 1470
DpnII	GATC	4 cut(s)	266, 425, 1118, 1468
DraI	TTTAAA	1 cut(s)	37
DriI	GACNNNNNGTC	1 cut(s)	959
Eam1104I	CTCTTC	2 cut(s)	343, 1422
Eam1105I	GACNNNNNGTC	1 cut(s)	959
EarI	CTCTTC	2 cut(s)	343, 1422
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	2 cut(s)	50, 822
Eco32I	GATATC	1 cut(s)	1348
Eco47I	GGWCC	1 cut(s)	479
Eco57I	CTGAAG	1 cut(s)	87
Eco72I	CACGTG	1 cut(s)	958
Eco81I	CCTNAGG	1 cut(s)	1071
EcoRII	CCWGG	4 cut(s)	214, 246, 337, 475
EcoRV	GATATC	1 cut(s)	1348
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	6 cut(s)	332, 409, 780, 890, 937, 1009
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	6 cut(s)	328, 405, 776, 886, 933, 1005
Fnu4HI	GCNGC	3 cut(s)	495, 730, 762
FokI	GGATG	8 cut(s)	520, 644, 731, 1011, 1271, 1277, 1292, 1458
Fsp4HI	GCNGC	3 cut(s)	495, 730, 762
FspBI	CTAG	3 cut(s)	387, 498, 1223
FspI	TGCGCA	1 cut(s)	775
GlaI	GCGC	1 cut(s)	775
GluI	GCNGC	3 cut(s)	495, 730, 762
GsaI	CCCAGC	1 cut(s)	1087
GsuI	CTGGAG	1 cut(s)	1006
HaeIII	GGCC	2 cut(s)	50, 822
HapII	CCGG	1 cut(s)	872
HgaI	GACGC	1 cut(s)	1294
HhaI	GCGC	1 cut(s)	776
Hin1I	GRCGYC	1 cut(s)	472
Hin1II	CATG	6 cut(s)	332, 409, 780, 890, 937, 1009
Hin6I	GCGC	1 cut(s)	774
HinP1I	GCGC	1 cut(s)	774
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	2 cut(s)	521, 1066
HpaII	CCGG	1 cut(s)	872
HphI	GGTGA	2 cut(s)	839, 874
Hpy166II	GTNNAC	3 cut(s)	355, 808, 810
Hpy188I	TCNGA	9 cut(s)	77, 89, 361, 516, 577, 693, 965, 1243, 1476
Hpy188III	TCNNGA	7 cut(s)	406, 545, 785, 899, 1063, 1277, 1370
Hpy8I	GTNNAC	3 cut(s)	355, 808, 810
Hpy99I	CGWCG	1 cut(s)	1288
HpyAV	CCTTC	4 cut(s)	169, 812, 960, 1405
HpyCH4III	ACNGT	4 cut(s)	305, 705, 851, 905
HpyCH4IV	ACGT	2 cut(s)	472, 957
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 47
HpyF3I	CTNAG	8 cut(s)	86, 237, 513, 842, 921, 1071, 1099, 1108
HpySE526I	ACGT	2 cut(s)	472, 957
Hsp92I	GRCGYC	1 cut(s)	472
Hsp92II	CATG	6 cut(s)	332, 409, 780, 890, 937, 1009
HspAI	GCGC	1 cut(s)	774
Kzo9I	GATC	4 cut(s)	266, 425, 1118, 1468
LmnI	GCTCC	3 cut(s)	10, 121, 491
Lsp1109I	GCAGC	3 cut(s)	481, 716, 773
LweI	GCATC	9 cut(s)	50, 377, 427, 542, 1216, 1255, 1270, 1313, 1321
MabI	ACCWGGT	2 cut(s)	214, 246
MaeI	CTAG	3 cut(s)	387, 498, 1223
MaeII	ACGT	2 cut(s)	472, 957
MaeIII	GTNAC	4 cut(s)	389, 845, 1001, 1216
MalI	GATC	4 cut(s)	268, 427, 1120, 1470
MbiI	CCGCTC	1 cut(s)	1174
MboI	GATC	4 cut(s)	266, 425, 1118, 1468
MboII	GAAGA	7 cut(s)	80, 254, 360, 845, 941, 1439, 1478
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	784
MluCI	AATT	7 cut(s)	57, 115, 317, 652, 1038, 1248, 1435
MlyI	GAGTC	2 cut(s)	515, 1060
MroXI	GAANNNNTTC	1 cut(s)	837
MseI	TTAA	1 cut(s)	36
MslI	CAYNNNNRTG	2 cut(s)	1296, 1489
MspA1I	CMGCKG	1 cut(s)	1543
MspI	CCGG	1 cut(s)	872
MspR9I	CCNGG	4 cut(s)	216, 248, 339, 477
Mva1269I	GAATGC	2 cut(s)	986, 1423
MvaI	CCWGG	4 cut(s)	216, 248, 339, 477
MwoI	GCNNNNNNNGC	2 cut(s)	38, 47
NdeII	GATC	4 cut(s)	266, 425, 1118, 1468
NlaIII	CATG	6 cut(s)	332, 409, 780, 890, 937, 1009
NlaIV	GGNNCC	3 cut(s)	6, 427, 870
NmuCI	GTSAC	4 cut(s)	389, 845, 1001, 1216
NsbI	TGCGCA	1 cut(s)	775
NspI	RCATGY	3 cut(s)	780, 937, 1009
NspV	TTCGAA	1 cut(s)	168
PagI	TCATGA	1 cut(s)	405
PceI	AGGCCT	2 cut(s)	50, 822
PctI	GAATGC	2 cut(s)	986, 1423
PdmI	GAANNNNTTC	1 cut(s)	837
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	3 cut(s)	496, 731, 763
PleI	GAGTC	2 cut(s)	515, 1060
PmaCI	CACGTG	1 cut(s)	958
PmlI	CACGTG	1 cut(s)	958
PpsI	GAGTC	2 cut(s)	515, 1060
Ppu21I	YACGTR	1 cut(s)	958
PsiI	TTATAA	1 cut(s)	570
Psp6I	CCWGG	4 cut(s)	214, 246, 337, 475
PspCI	CACGTG	1 cut(s)	958
PspFI	CCCAGC	1 cut(s)	1083
PspGI	CCWGG	4 cut(s)	214, 246, 337, 475
PspN4I	GGNNCC	3 cut(s)	6, 427, 870
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	5 cut(s)	64, 98, 354, 809, 1029
RsaNI	GTAC	5 cut(s)	63, 97, 353, 808, 1028
RseI	CAYNNNNRTG	2 cut(s)	1296, 1489
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	3 cut(s)	495, 730, 762
Sau3AI	GATC	4 cut(s)	266, 425, 1118, 1468
Sau96I	GGNCC	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	2 cut(s)	515, 1060
ScrFI	CCNGG	4 cut(s)	216, 248, 339, 477
SduI	GDGCHC	1 cut(s)	784
SexAI	ACCWGGT	2 cut(s)	214, 246
SfaNI	GCATC	9 cut(s)	50, 377, 427, 542, 1216, 1255, 1270, 1313, 1321
SfcI	CTRYAG	3 cut(s)	142, 441, 450
SfuI	TTCGAA	1 cut(s)	168
SinI	GGWCC	1 cut(s)	479
SmiMI	CAYNNNNRTG	2 cut(s)	1296, 1489
SpeI	ACTAGT	1 cut(s)	386
Sse9I	AATT	7 cut(s)	57, 115, 317, 652, 1038, 1248, 1435
SseBI	AGGCCT	2 cut(s)	50, 822
SsiI	CCGC	4 cut(s)	716, 1174, 1375, 1543
SspI	AATATT	1 cut(s)	697
SspMI	CTAG	3 cut(s)	387, 498, 1223
StuI	AGGCCT	2 cut(s)	50, 822
StyD4I	CCNGG	4 cut(s)	214, 246, 337, 475
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	4 cut(s)	305, 705, 851, 905
TaiI	ACGT	2 cut(s)	475, 960
TaqI	TCGA	1 cut(s)	168
TasI	AATT	7 cut(s)	57, 115, 317, 652, 1038, 1248, 1435
TatI	WGTACW	5 cut(s)	62, 96, 352, 807, 1027
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TscAI	CASTG	6 cut(s)	231, 310, 708, 1016, 1195, 1496
TseFI	GTSAC	4 cut(s)	389, 845, 1001, 1216
TseI	GCWGC	3 cut(s)	494, 729, 761
Tsp45I	GTSAC	4 cut(s)	389, 845, 1001, 1216
TspDTI	ATGAA	8 cut(s)	188, 222, 394, 422, 500, 942, 1300, 1479
TspGWI	ACGGA	5 cut(s)	504, 526, 601, 1175, 1542
TspRI	CASTG	6 cut(s)	231, 310, 708, 1016, 1195, 1496
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	2 cut(s)	1038, 1248
XceI	RCATGY	3 cut(s)	780, 937, 1009
XmnI	GAANNNNTTC	1 cut(s)	837
XspI	CTAG	3 cut(s)	387, 498, 1223
ZraI	GACGTC	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.