Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8250301.1

Orthogroup ID

OG0000439

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 369

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8250301.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 275 bp

atgcttcaggtgttctggacttctcaaggaaaaggctggggagttagaaccttagaggtcttggagaaaggatccttcgtctgtgaatatgtcggggagatactgaccaatacagagttatataatcggaatatgaaaagcaatggcaatgacaaacatacatacccagtcacactagatgcagattgggggtcagaacagattttgagggatgaggatgccctgtgtctggatgggacgcttcatggaaatgttgcaaggtttatcaatcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005911 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009506 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0030054 GO:0031974 GO:0031981 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0051276 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pre-SET SET WIYLD

Protein Analysis

91

Amino Acids

10.35

Weight (kDa)

4.98

Isoelectric Point (pI)

19.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380 AT3G04380
fragaria_vesca	FvH4_2g02250 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_4g04470 FvH4_5g31170 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620 FvH4_6g01620
malus_domestica	MD02G1265700.v1.1 MD04G1231900.v1.1 MD12G1043600.v1.1 MD12G1250000.v1.1
prunus_persica	Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.1G047100_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.2G058800_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1 Prupe.6G351300_v2.0.a1
pyrus_communis	pycom02g22720 pycom04g20520
rosa_chinensis	RchiOBHm_Chr3g0449441 RchiOBHm_Chr4g0395181 RchiOBHm_Chr6g0245941 RchiOBHm_Chr7g0228041
rosa_laevigata	RLG00000001593 RLG00000009641 RLG00000015284 RLG00000025830
rosa_multiflora	Rmu_co8250301.1_g000001 Rmu_co8518901.1_g000001 Rmu_sc0004858.1_g000011 Rmu_sc0007224.1_g000005 Rmu_sc0007891.1_g000010 Rmu_sc0019478.1_g000002 Rmu_sc0024829.1_g000001 Rmu_sc0039188.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231620 Rroxscaffold_5G00340120 Rroxscaffold_6G00427390 Rroxscaffold_7G00215050
rosa_rugosa	Rorug02G0620600 Rorug03G0359100.1 Rorug03G0359200.1 Rorug03G0359300.1 Rorug05G0517600 Rorug05G0517700 Rorug05G0517800 Rorug05G0517900 Rorug05G0518000 Rorug05G0518100 Rorug05G0518200 Rorug05G0518300.1 Rorug07G0245600
rosa_samantha	Rh3AG018400 Rh3BG018800 Rh3CG017700 Rh4AG057300 Rh4BG056200 Rh4CG062300 Rh4DG053200 Rh6AG032500 Rh6BG028300 Rh6CG028300 Rh6CG028500 Rh6CG028600 Rh7AG399400 Rh7BG380800 Rh7CG417400 Rh7DG394900
rosa_wichuraiana	Rw4G004610 Rw6G002670 Rw7G033190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	66, 79
AfiI	CCNNNNNNNGG	1 cut(s)	229
AlwI	GGATC	2 cut(s)	66, 79
BamHI	GGATCC	1 cut(s)	71
BccI	CCATC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	73
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	169, 208
BmuI	ACTGGG	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	1 cut(s)	167
Bse3DI	GCAATG	2 cut(s)	148, 154
BseGI	GGATG	3 cut(s)	217, 223, 238
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMI	GCAATG	2 cut(s)	148, 154
BseNI	ACTGG	1 cut(s)	167
BseYI	CCCAGC	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	250
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmFI	GGGAC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	71
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	2 cut(s)	66, 79
BsrDI	GCAATG	2 cut(s)	148, 154
BsrI	ACTGG	1 cut(s)	167
BssMI	GATC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	3 cut(s)	217, 223, 238
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	217, 223, 238
CseI	GACGC	1 cut(s)	247
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	1 cut(s)	36
CviKI_1	RGCY	1 cut(s)	36
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
FaeI	CATG	1 cut(s)	248
FaiI	YATR	8 cut(s)	90, 121, 123, 134, 159, 163, 246, 273
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	1 cut(s)	244
FokI	GGATG	3 cut(s)	224, 230, 245
FspBI	CTAG	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	247
Hin1II	CATG	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	129, 196
Hpy188III	TCNNGA	2 cut(s)	16, 230
HpyAV	CCTTC	1 cut(s)	85
HpyCH4V	TGCA	2 cut(s)	182, 257
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	71
LpnPI	CCDG	4 cut(s)	22, 180, 215, 236
LweI	GCATC	2 cut(s)	169, 208
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MflI	RGATCY	1 cut(s)	71
MnlI	CCTC	3 cut(s)	49, 201, 208
MslI	CAYNNNNRTG	1 cut(s)	249
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	71
RseI	CAYNNNNRTG	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	71
SetI	ASST	4 cut(s)	12, 53, 60, 263
SfaNI	GCATC	2 cut(s)	169, 208
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
SspMI	CTAG	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	149, 233
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.